HEADER METAL BINDING PROTEIN 22-DEC-22 8C2Q TITLE SILVER ION-BOUND STRUCTURE OF THE SILVER SPECIFIC CHAPERONE SILF TITLE 2 NEEDED FOR BACTERIAL SILVER RESISTANCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: ORF96; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SILVER BOUND PROTEIN PERIPLASMIC PROTEIN PLASMID-ENCODED PROTEIN KEYWDS 2 BACTERIA SILVER RESISTANCE METAL COORDINATION METAL BINDING PROTEIN, KEYWDS 3 METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.R.MONNEAU,O.WALKER,M.HOLOGNE REVDAT 1 25-OCT-23 8C2Q 0 JRNL AUTH C.ARRAULT,Y.R.MONNEAU,M.MARTIN,F.X.CANTRELLE,E.BOLL, JRNL AUTH 2 F.CHIROT,C.COMBY ZERBINO,O.WALKER,M.HOLOGNE JRNL TITL THE BATTLE FOR SILVER BINDING: HOW THE INTERPLAY BETWEEN THE JRNL TITL 2 SILE, SILF, AND SILB PROTEINS CONTRIBUTES TO THE SILVER JRNL TITL 3 EFFLUX PUMP MECHANISM. JRNL REF J.BIOL.CHEM. V. 299 05004 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37394004 JRNL DOI 10.1016/J.JBC.2023.105004 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 8C2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127548. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 220 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 300 UM SILF, 20 MM MES, 100 MM REMARK 210 NACL, 330 UM AG(I), 100% D2O; REMARK 210 500 UM [U-100% 13C; U-100% 15N] REMARK 210 SILF, 20 MM MES, 100 MM NACL, REMARK 210 550 UM AG(I), 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D HNCO; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, NMRFAM-SPARKY, REMARK 210 CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 94.72 -69.05 REMARK 500 1 SER A 6 98.66 -62.72 REMARK 500 1 HIS A 7 95.24 -69.60 REMARK 500 1 ALA A 16 -59.10 -168.58 REMARK 500 1 GLN A 19 55.65 -105.94 REMARK 500 2 LYS A 3 -73.38 -65.48 REMARK 500 2 SER A 6 88.47 -161.08 REMARK 500 2 HIS A 7 99.12 -62.28 REMARK 500 2 VAL A 48 -31.67 -131.91 REMARK 500 2 GLN A 82 78.33 -118.40 REMARK 500 3 GLN A 82 78.21 -102.52 REMARK 500 3 GLN A 95 -39.24 -131.31 REMARK 500 4 HIS A 4 86.11 -68.42 REMARK 500 4 HIS A 7 -54.31 -141.98 REMARK 500 4 MET A 10 98.64 -63.06 REMARK 500 4 ASP A 32 72.61 -100.33 REMARK 500 4 ALA A 44 95.33 -64.99 REMARK 500 5 ASP A 32 79.01 -104.33 REMARK 500 5 GLN A 82 79.38 -119.81 REMARK 500 5 GLN A 95 -68.65 -155.03 REMARK 500 6 MET A 1 78.44 49.13 REMARK 500 6 MET A 10 -77.31 -107.54 REMARK 500 6 ALA A 16 48.63 -95.94 REMARK 500 6 ALA A 44 99.63 -66.57 REMARK 500 6 GLN A 82 77.39 -100.66 REMARK 500 7 VAL A 48 -34.22 -141.94 REMARK 500 7 ALA A 62 91.83 -69.46 REMARK 500 8 ALA A -2 -70.06 -85.47 REMARK 500 8 LEU A 2 76.10 58.70 REMARK 500 8 HIS A 7 -7.87 73.38 REMARK 500 8 SER A 14 -78.12 -160.51 REMARK 500 8 SER A 17 88.74 -69.11 REMARK 500 8 ALA A 44 98.59 -62.19 REMARK 500 8 VAL A 48 -23.31 -142.03 REMARK 500 8 PRO A 51 -164.32 -75.02 REMARK 500 8 ALA A 52 95.41 -66.85 REMARK 500 8 GLN A 82 79.16 -116.09 REMARK 500 9 MET A 10 110.89 -164.67 REMARK 500 9 SER A 17 92.12 -69.26 REMARK 500 9 ALA A 44 96.58 -62.91 REMARK 500 10 ALA A -2 93.13 -69.91 REMARK 500 10 MET A 10 74.24 -111.16 REMARK 500 10 ALA A 44 98.73 -67.14 REMARK 500 10 PRO A 51 -178.15 -69.39 REMARK 500 10 GLN A 82 78.72 -117.17 REMARK 500 11 HIS A 7 -30.68 -153.23 REMARK 500 11 ASN A 11 -45.09 -145.06 REMARK 500 11 ALA A 44 98.66 -67.13 REMARK 500 11 GLN A 82 78.50 -109.90 REMARK 500 12 HIS A 7 -46.76 -158.67 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 NE2 REMARK 620 2 MET A 53 SD 107.7 REMARK 620 3 MET A 55 SD 124.4 124.7 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8BXJ RELATED DB: PDB REMARK 900 APO STATE OF SILF REMARK 900 RELATED ID: 51726 RELATED DB: BMRB DBREF 8C2Q A 1 96 UNP Q9ZHD1 Q9ZHD1_SALTM 1 96 SEQADV 8C2Q GLY A -3 UNP Q9ZHD1 EXPRESSION TAG SEQADV 8C2Q ALA A -2 UNP Q9ZHD1 EXPRESSION TAG SEQADV 8C2Q MET A -1 UNP Q9ZHD1 EXPRESSION TAG SEQADV 8C2Q GLY A 0 UNP Q9ZHD1 EXPRESSION TAG SEQRES 1 A 100 GLY ALA MET GLY MET LEU LYS HIS ILE SER HIS GLY ASP SEQRES 2 A 100 MET ASN ALA ALA SER ASP ALA SER VAL GLN GLN VAL ILE SEQRES 3 A 100 LYS GLY THR GLY ILE VAL LYS ASP ILE ASP MET ASN SER SEQRES 4 A 100 LYS LYS ILE THR ILE SER HIS GLU ALA ILE PRO ALA VAL SEQRES 5 A 100 GLY TRP PRO ALA MET THR MET ARG PHE THR PHE VAL ASN SEQRES 6 A 100 ALA ASP ASP ALA ILE ASN ALA LEU LYS THR GLY ASN HIS SEQRES 7 A 100 VAL ASP PHE SER PHE ILE GLN GLN GLY ASN ILE SER LEU SEQRES 8 A 100 LEU LYS SER ILE ASN VAL THR GLN SER HET AG A 101 1 HETNAM AG SILVER ION FORMUL 2 AG AG 1+ HELIX 1 AA1 ASP A 63 LEU A 69 1 7 SHEET 1 AA1 6 ILE A 22 VAL A 28 0 SHEET 2 AA1 6 LYS A 37 HIS A 42 -1 O SER A 41 N ILE A 27 SHEET 3 AA1 6 MET A 53 PHE A 59 -1 O MET A 55 N ILE A 40 SHEET 4 AA1 6 ILE A 85 GLN A 95 1 O SER A 86 N THR A 58 SHEET 5 AA1 6 HIS A 74 GLN A 82 -1 N ASP A 76 O ASN A 92 SHEET 6 AA1 6 ILE A 22 VAL A 28 -1 N GLY A 26 O VAL A 75 LINK NE2 HIS A 42 AG AG A 101 1555 1555 2.45 LINK SD MET A 53 AG AG A 101 1555 1555 2.36 LINK SD MET A 55 AG AG A 101 1555 1555 2.58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1