HEADER TRANSFERASE 23-DEC-22 8C2Z TITLE CRYSTAL STRUCTURE OF DYRK1B IN COMPLEX WITH AZ191 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 3 1B; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MINIBRAIN-RELATED KINASE,MIRK PROTEIN KINASE; COMPND 6 EC: 2.7.12.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYRK1B, MIRK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, DIABETES, KINASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GRYGIER,K.PUSTELNY,G.DUBIN,A.CZARNA REVDAT 2 16-OCT-24 8C2Z 1 REMARK REVDAT 1 17-JAN-24 8C2Z 0 JRNL AUTH P.GRYGIER,K.PUSTELNY,G.DUBIN,A.CZARNA JRNL TITL STRUCTURAL PERSPECTIVE ON THE DESIGN OF SELECTIVE DYRK1B JRNL TITL 2 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 29055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4100 - 4.2500 0.96 2630 146 0.1597 0.1916 REMARK 3 2 4.2500 - 3.3700 0.99 2600 139 0.1484 0.1911 REMARK 3 3 3.3700 - 2.9500 0.94 2462 128 0.1781 0.2187 REMARK 3 4 2.9500 - 2.6800 0.98 2558 121 0.1805 0.2359 REMARK 3 5 2.6800 - 2.4800 0.98 2522 139 0.1851 0.2420 REMARK 3 6 2.4800 - 2.3400 0.98 2502 149 0.1954 0.2687 REMARK 3 7 2.3400 - 2.2200 0.98 2502 148 0.1921 0.2304 REMARK 3 8 2.2200 - 2.1200 0.92 2366 125 0.2114 0.2585 REMARK 3 9 2.1200 - 2.0400 0.97 2476 120 0.2284 0.2770 REMARK 3 10 2.0400 - 1.9700 0.97 2493 144 0.2826 0.3217 REMARK 3 11 1.9700 - 1.9100 0.97 2456 129 0.3432 0.3821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.281 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.795 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2760 REMARK 3 ANGLE : 1.315 3739 REMARK 3 CHIRALITY : 0.079 405 REMARK 3 PLANARITY : 0.013 492 REMARK 3 DIHEDRAL : 15.653 1043 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2219 -34.2542 4.8445 REMARK 3 T TENSOR REMARK 3 T11: 0.3995 T22: 0.3576 REMARK 3 T33: 0.4633 T12: 0.0617 REMARK 3 T13: 0.0067 T23: 0.1035 REMARK 3 L TENSOR REMARK 3 L11: 5.5910 L22: 5.9795 REMARK 3 L33: 7.7250 L12: -0.8248 REMARK 3 L13: -1.6069 L23: 0.5279 REMARK 3 S TENSOR REMARK 3 S11: 0.2398 S12: 0.2187 S13: -0.2748 REMARK 3 S21: -0.6202 S22: -0.1567 S23: -0.3772 REMARK 3 S31: 0.8360 S32: 0.0907 S33: -0.1489 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0660 -17.2817 -0.9933 REMARK 3 T TENSOR REMARK 3 T11: 0.2523 T22: 0.3344 REMARK 3 T33: 0.3118 T12: 0.0273 REMARK 3 T13: 0.0799 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 1.0484 L22: 2.8571 REMARK 3 L33: 1.5425 L12: -0.3448 REMARK 3 L13: 1.1935 L23: -0.8610 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0565 S13: -0.0005 REMARK 3 S21: -0.0388 S22: -0.2416 S23: -0.3904 REMARK 3 S31: 0.1431 S32: 0.2493 S33: 0.2273 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9323 -12.3291 -20.7776 REMARK 3 T TENSOR REMARK 3 T11: 0.3558 T22: 0.2974 REMARK 3 T33: 0.2986 T12: 0.0507 REMARK 3 T13: 0.0189 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 1.6308 L22: 1.3517 REMARK 3 L33: 4.5591 L12: -0.3308 REMARK 3 L13: -0.4476 L23: 0.0339 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.2041 S13: 0.0359 REMARK 3 S21: -0.4387 S22: -0.2128 S23: -0.0102 REMARK 3 S31: 0.1202 S32: 0.1347 S33: 0.1697 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 45.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 2.03500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 25% PEG3350, REMARK 280 0.2 M MAGNESIUM CHLORIDE, 0.1 M MANGANESE (II) CHLORIDE., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.01050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.01050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.94800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.75450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.94800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.75450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.01050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.94800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.75450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.01050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.94800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.75450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 77 REMARK 465 ASP A 78 REMARK 465 SER A 79 REMARK 465 SER A 80 REMARK 465 ASN A 81 REMARK 465 LYS A 82 REMARK 465 LYS A 83 REMARK 465 GLU A 84 REMARK 465 LYS A 85 REMARK 465 LYS A 86 REMARK 465 VAL A 87 REMARK 465 GLN A 382 REMARK 465 THR A 383 REMARK 465 GLY A 384 REMARK 465 GLY A 385 REMARK 465 PRO A 386 REMARK 465 GLY A 387 REMARK 465 GLY A 388 REMARK 465 ARG A 389 REMARK 465 ARG A 390 REMARK 465 ALA A 391 REMARK 465 GLY A 392 REMARK 465 GLU A 393 REMARK 465 PRO A 394 REMARK 465 ALA A 435 REMARK 465 ASP A 436 REMARK 465 GLU A 437 REMARK 465 ALA A 438 REMARK 465 THR A 439 REMARK 465 ASN A 440 REMARK 465 THR A 441 REMARK 465 GLY A 442 REMARK 465 GLU A 443 REMARK 465 ASN A 444 REMARK 465 LEU A 445 REMARK 465 TYR A 446 REMARK 465 PHE A 447 REMARK 465 GLN A 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 ARG A 102 CD NE CZ NH1 NH2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 ARG A 252 CD NE CZ NH1 NH2 REMARK 470 ILE A 270 CG1 CG2 CD1 REMARK 470 TYR A 271 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 272 CG CD OE1 NE2 REMARK 470 GLU A 310 CD OE1 OE2 REMARK 470 GLN A 339 CG CD OE1 NE2 REMARK 470 ARG A 344 CD NE CZ NH1 NH2 REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 LYS A 365 CD CE NZ REMARK 470 ASP A 366 CG OD1 OD2 REMARK 470 ARG A 374 NE CZ NH1 NH2 REMARK 470 GLN A 376 CD OE1 NE2 REMARK 470 VAL A 381 CG1 CG2 REMARK 470 SER A 397 OG REMARK 470 THR A 434 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 90 18.73 49.73 REMARK 500 ARG A 110 -53.72 -147.22 REMARK 500 TYR A 195 -176.04 -171.52 REMARK 500 LEU A 233 -61.83 -92.21 REMARK 500 CYS A 238 -3.44 76.66 REMARK 500 ASP A 239 38.96 -147.55 REMARK 500 ASP A 259 65.92 73.28 REMARK 500 GLN A 268 32.14 -81.68 REMARK 500 ILE A 270 26.97 -141.87 REMARK 500 GLN A 275 148.84 70.36 REMARK 500 ASP A 291 -159.99 -146.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 160 OE2 REMARK 620 2 HIS A 179 NE2 87.6 REMARK 620 3 HOH A 708 O 116.8 84.7 REMARK 620 4 HOH A 709 O 76.1 94.3 167.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 239 OD2 REMARK 620 2 ASP A 259 OD2 86.5 REMARK 620 3 HOH A 616 O 177.1 92.3 REMARK 620 4 HOH A 667 O 78.9 81.3 103.6 REMARK 620 5 HOH A 675 O 92.7 99.5 84.8 171.6 REMARK 620 6 HOH A 703 O 80.7 164.4 100.9 87.5 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 308 O REMARK 620 2 HOH A 665 O 73.4 REMARK 620 3 HOH A 670 O 84.0 119.3 REMARK 620 4 HOH A 714 O 171.2 111.9 87.3 REMARK 620 5 HOH A 771 O 114.3 162.3 78.1 62.7 REMARK 620 6 HOH A 778 O 127.9 97.3 138.4 59.4 65.2 REMARK 620 N 1 2 3 4 5 DBREF 8C2Z A 78 442 UNP Q9Y463 DYR1B_HUMAN 78 442 SEQADV 8C2Z MET A 77 UNP Q9Y463 INITIATING METHIONINE SEQADV 8C2Z GLU A 443 UNP Q9Y463 EXPRESSION TAG SEQADV 8C2Z ASN A 444 UNP Q9Y463 EXPRESSION TAG SEQADV 8C2Z LEU A 445 UNP Q9Y463 EXPRESSION TAG SEQADV 8C2Z TYR A 446 UNP Q9Y463 EXPRESSION TAG SEQADV 8C2Z PHE A 447 UNP Q9Y463 EXPRESSION TAG SEQADV 8C2Z GLN A 448 UNP Q9Y463 EXPRESSION TAG SEQRES 1 A 372 MET ASP SER SER ASN LYS LYS GLU LYS LYS VAL LEU ASN SEQRES 2 A 372 HIS GLY TYR ASP ASP ASP ASN HIS ASP TYR ILE VAL ARG SEQRES 3 A 372 SER GLY GLU ARG TRP LEU GLU ARG TYR GLU ILE ASP SER SEQRES 4 A 372 LEU ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA SEQRES 5 A 372 TYR ASP HIS GLN THR GLN GLU LEU VAL ALA ILE LYS ILE SEQRES 6 A 372 ILE LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE SEQRES 7 A 372 GLU LEU ARG LEU LEU GLU LEU MET ASN GLN HIS ASP THR SEQRES 8 A 372 GLU MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE SEQRES 9 A 372 MET PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU LEU LEU SEQRES 10 A 372 SER TYR ASN LEU TYR ASP LEU LEU ARG ASN THR HIS PHE SEQRES 11 A 372 ARG GLY VAL SER LEU ASN LEU THR ARG LYS LEU ALA GLN SEQRES 12 A 372 GLN LEU CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU SEQRES 13 A 372 LEU SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE SEQRES 14 A 372 LEU LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL SEQRES 15 A 372 ASP PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR SEQRES 16 A 372 GLN PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL SEQRES 17 A 372 LEU LEU GLY THR PRO TYR ASP LEU ALA ILE ASP MET TRP SEQRES 18 A 372 SER LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU SEQRES 19 A 372 PRO LEU PHE SER GLY SER ASN GLU VAL ASP GLN MET ASN SEQRES 20 A 372 ARG ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA ALA MET SEQRES 21 A 372 LEU ASP GLN ALA PRO LYS ALA ARG LYS TYR PHE GLU ARG SEQRES 22 A 372 LEU PRO GLY GLY GLY TRP THR LEU ARG ARG THR LYS GLU SEQRES 23 A 372 LEU ARG LYS ASP TYR GLN GLY PRO GLY THR ARG ARG LEU SEQRES 24 A 372 GLN GLU VAL LEU GLY VAL GLN THR GLY GLY PRO GLY GLY SEQRES 25 A 372 ARG ARG ALA GLY GLU PRO GLY HIS SER PRO ALA ASP TYR SEQRES 26 A 372 LEU ARG PHE GLN ASP LEU VAL LEU ARG MET LEU GLU TYR SEQRES 27 A 372 GLU PRO ALA ALA ARG ILE SER PRO LEU GLY ALA LEU GLN SEQRES 28 A 372 HIS GLY PHE PHE ARG ARG THR ALA ASP GLU ALA THR ASN SEQRES 29 A 372 THR GLY GLU ASN LEU TYR PHE GLN MODRES 8C2Z PTR A 273 TYR MODIFIED RESIDUE HET PTR A 273 16 HET QS0 A 501 32 HET MN A 502 1 HET MN A 503 1 HET MN A 504 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM QS0 N-[2-METHOXY-4-(4-METHYLPIPERAZIN-1-YL)PHENYL]-4-(1- HETNAM 2 QS0 METHYLPYRROLO[2,3-C]PYRIDIN-3-YL)PYRIMIDIN-2-AMINE HETNAM MN MANGANESE (II) ION HETSYN PTR PHOSPHONOTYROSINE HETSYN QS0 N-[2-METHOXY-4-(4-METHYLPIPERAZIN-1-YL)PHENYL]-4-(1- HETSYN 2 QS0 METHYLPYRROLO[2,3-C]PYRIDIN-3-YL)PYRIMIDIN-2-AMINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 QS0 C24 H27 N7 O FORMUL 3 MN 3(MN 2+) FORMUL 6 HOH *185(H2 O) HELIX 1 AA1 LYS A 145 ASN A 163 1 19 HELIX 2 AA2 GLU A 168 ILE A 173 5 6 HELIX 3 AA3 LEU A 197 THR A 204 1 8 HELIX 4 AA4 SER A 210 THR A 230 1 21 HELIX 5 AA5 LYS A 241 GLU A 243 5 3 HELIX 6 AA6 SER A 276 ARG A 280 5 5 HELIX 7 AA7 SER A 281 LEU A 286 1 6 HELIX 8 AA8 LEU A 292 GLY A 309 1 18 HELIX 9 AA9 ASN A 317 GLY A 330 1 14 HELIX 10 AB1 PRO A 333 GLN A 339 1 7 HELIX 11 AB2 LYS A 342 TYR A 346 1 5 HELIX 12 AB3 ARG A 374 GLY A 380 1 7 HELIX 13 AB4 SER A 397 LEU A 412 1 16 HELIX 14 AB5 SER A 421 GLN A 427 1 7 SHEET 1 AA1 6 ARG A 106 TRP A 107 0 SHEET 2 AA1 6 TYR A 111 GLY A 120 -1 O TYR A 111 N TRP A 107 SHEET 3 AA1 6 GLY A 123 ASP A 130 -1 O LYS A 127 N ASP A 114 SHEET 4 AA1 6 GLU A 135 ILE A 142 -1 O GLU A 135 N ASP A 130 SHEET 5 AA1 6 HIS A 185 GLU A 191 -1 O PHE A 190 N ALA A 138 SHEET 6 AA1 6 LEU A 176 PHE A 182 -1 N ARG A 178 O VAL A 189 SHEET 1 AA2 3 TYR A 195 ASN A 196 0 SHEET 2 AA2 3 ILE A 245 LEU A 247 -1 O LEU A 247 N TYR A 195 SHEET 3 AA2 3 ILE A 255 ILE A 257 -1 O LYS A 256 N LEU A 246 SHEET 1 AA3 2 ILE A 235 ILE A 236 0 SHEET 2 AA3 2 CYS A 264 GLN A 265 -1 O CYS A 264 N ILE A 236 SHEET 1 AA4 2 PHE A 347 ARG A 349 0 SHEET 2 AA4 2 TRP A 355 LEU A 357 -1 O THR A 356 N GLU A 348 LINK C GLN A 272 N PTR A 273 1555 1555 1.32 LINK C PTR A 273 N ILE A 274 1555 1555 1.33 LINK OE2 GLU A 160 MN MN A 503 1555 1555 2.71 LINK NE2 HIS A 179 MN MN A 503 1555 1555 2.21 LINK OD2 ASP A 239 MN MN A 502 1555 1555 2.24 LINK OD2 ASP A 259 MN MN A 502 1555 1555 2.05 LINK O THR A 308 MN MN A 504 1555 1555 2.45 LINK MN MN A 502 O HOH A 616 1555 1555 2.20 LINK MN MN A 502 O HOH A 667 1555 1555 2.17 LINK MN MN A 502 O HOH A 675 1555 1555 2.13 LINK MN MN A 502 O HOH A 703 1555 1555 2.26 LINK MN MN A 503 O HOH A 708 1555 1555 2.17 LINK MN MN A 503 O HOH A 709 1555 1555 2.02 LINK MN MN A 504 O HOH A 665 1555 1555 2.12 LINK MN MN A 504 O HOH A 670 1555 1555 2.64 LINK MN MN A 504 O HOH A 714 1555 6444 2.75 LINK MN MN A 504 O HOH A 771 1555 1555 2.50 LINK MN MN A 504 O HOH A 778 1555 6444 2.09 CRYST1 115.896 121.509 54.021 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018511 0.00000