HEADER SIGNALING PROTEIN 23-DEC-22 8C3H TITLE CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN COMPLEX A TITLE 2 LONG ASPARTIMIDE DEGRON PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEREBLON ISOFORM 4; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: P3(40); COMPND 7 CHAIN: D, E; COMPND 8 SYNONYM: ASPARTIMIDE DEGRON PEPTIDE,AMYLOID-BETA PRECURSOR PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM GRYPHISWALDENSE; SOURCE 3 ORGANISM_TAXID: 55518; SOURCE 4 GENE: MGR_0879; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS PROTEIN DAMAGE, PROTEIN AGEING, PROTEIN CHAIN BREAK, ASPARTIMIDE, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HEIM,A.K.SPRING,M.D.HARTMANN REVDAT 2 15-NOV-23 8C3H 1 LINK ATOM REVDAT 1 08-FEB-23 8C3H 0 JRNL AUTH C.HEIM,A.K.SPRING,S.KIRCHGASSNER,D.SCHWARZER,M.D.HARTMANN JRNL TITL CEREBLON NEO-SUBSTRATE BINDING MIMICS THE RECOGNITION OF THE JRNL TITL 2 CYCLIC IMIDE DEGRON. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 646 30 2023 JRNL REFN ESSN 1090-2104 JRNL PMID 36701892 JRNL DOI 10.1016/J.BBRC.2023.01.051 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.007 REMARK 3 FREE R VALUE TEST SET COUNT : 1630 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2218 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : 2.27300 REMARK 3 B33 (A**2) : -0.58400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.138 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2266 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2013 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3074 ; 1.769 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4603 ; 1.451 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 6.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;36.683 ;21.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;12.508 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.201 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2665 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 609 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 378 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 69 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1037 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1139 ; 1.829 ; 2.725 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1138 ; 1.829 ; 2.726 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1417 ; 2.544 ; 4.067 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1418 ; 2.543 ; 4.067 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1127 ; 2.504 ; 2.973 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1127 ; 2.504 ; 2.973 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1653 ; 3.840 ; 4.363 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1654 ; 3.839 ; 4.362 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 123 NULL REMARK 3 1 B 20 B 123 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6171 17.5462 2.3276 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.0257 REMARK 3 T33: 0.1088 T12: 0.0109 REMARK 3 T13: -0.0191 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.0568 L22: 2.1318 REMARK 3 L33: 5.0533 L12: -0.0213 REMARK 3 L13: 0.8850 L23: 1.3992 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.0239 S13: -0.1715 REMARK 3 S21: -0.0281 S22: -0.0255 S23: 0.1699 REMARK 3 S31: 0.1503 S32: 0.0176 S33: 0.0034 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8834 6.9850 23.5485 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: 0.0141 REMARK 3 T33: 0.0546 T12: -0.0058 REMARK 3 T13: 0.0082 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.9391 L22: 3.6177 REMARK 3 L33: 3.4290 L12: -1.4152 REMARK 3 L13: 0.2041 L23: -0.6877 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: -0.0503 S13: -0.0686 REMARK 3 S21: -0.0890 S22: 0.0063 S23: -0.0802 REMARK 3 S31: -0.0061 S32: 0.0951 S33: -0.0527 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 18 C 123 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2318 -2.6142 -8.2947 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.3692 REMARK 3 T33: 0.3590 T12: 0.0176 REMARK 3 T13: 0.0581 T23: 0.0640 REMARK 3 L TENSOR REMARK 3 L11: 4.4802 L22: 4.4406 REMARK 3 L33: 5.5832 L12: -1.0117 REMARK 3 L13: 3.8821 L23: 0.4698 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: -0.3968 S13: -0.4641 REMARK 3 S21: 0.0329 S22: 0.2104 S23: 0.7664 REMARK 3 S31: -0.0593 S32: -0.7882 S33: -0.1850 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 7 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8127 22.2432 -5.7771 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.1967 REMARK 3 T33: 0.1516 T12: -0.0316 REMARK 3 T13: 0.0254 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 6.3091 L22: 2.3179 REMARK 3 L33: 1.0287 L12: 0.3719 REMARK 3 L13: 0.4696 L23: -0.2119 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.4440 S13: 0.3820 REMARK 3 S21: -0.2476 S22: -0.0298 S23: -0.2773 REMARK 3 S31: -0.3242 S32: 0.2206 S33: -0.0162 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 7 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4326 18.0659 30.8194 REMARK 3 T TENSOR REMARK 3 T11: 0.3317 T22: 0.2219 REMARK 3 T33: 0.1969 T12: 0.0413 REMARK 3 T13: -0.0143 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.4277 L22: 6.4837 REMARK 3 L33: 1.5164 L12: 2.9755 REMARK 3 L13: 1.0329 L23: 2.5363 REMARK 3 S TENSOR REMARK 3 S11: 0.1670 S12: -0.1475 S13: 0.1304 REMARK 3 S21: 0.1886 S22: -0.1910 S23: 0.1343 REMARK 3 S31: -0.3279 S32: -0.0816 S33: 0.0240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8C3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 47.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.84 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.42 REMARK 200 R MERGE FOR SHELL (I) : 1.62900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4V2Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M (NH4)H2PO4, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 274K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.12800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.42900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.41050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.42900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.12800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.41050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLN A 12 REMARK 465 MET A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 ASP A 124 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 GLN B 8 REMARK 465 ASN B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 GLN B 12 REMARK 465 MET B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 PRO B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 ASP B 124 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 ALA C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 7 REMARK 465 GLN C 8 REMARK 465 ASN C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLN C 12 REMARK 465 MET C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 ALA C 16 REMARK 465 PRO C 17 REMARK 465 LEU C 38 REMARK 465 PRO C 39 REMARK 465 MET C 40 REMARK 465 GLY C 41 REMARK 465 GLY C 42 REMARK 465 ASP C 43 REMARK 465 HIS C 44 REMARK 465 GLU C 45 REMARK 465 HIS C 46 REMARK 465 VAL C 47 REMARK 465 VAL C 48 REMARK 465 PHE C 49 REMARK 465 ASN C 50 REMARK 465 PRO C 51 REMARK 465 ALA C 52 REMARK 465 GLY C 53 REMARK 465 MET C 54 REMARK 465 ILE C 55 REMARK 465 PHE C 56 REMARK 465 ARG C 57 REMARK 465 VAL C 58 REMARK 465 GLY C 71 REMARK 465 ALA C 72 REMARK 465 PRO C 73 REMARK 465 SER C 74 REMARK 465 GLY C 75 REMARK 465 GLU C 76 REMARK 465 PHE C 77 REMARK 465 SER C 78 REMARK 465 TRP C 79 REMARK 465 PHE C 80 REMARK 465 LYS C 81 REMARK 465 GLY C 82 REMARK 465 TYR C 83 REMARK 465 ASP C 84 REMARK 465 TRP C 85 REMARK 465 TYR C 101 REMARK 465 GLU C 102 REMARK 465 GLY C 103 REMARK 465 GLY C 104 REMARK 465 SER C 105 REMARK 465 GLN C 106 REMARK 465 PRO C 107 REMARK 465 GLN C 108 REMARK 465 THR C 109 REMARK 465 ASP C 124 REMARK 465 LYS D 1 REMARK 465 LYS E 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLN A 106 CG CD OE1 NE2 REMARK 470 LYS A 115 CE NZ REMARK 470 ARG B 68 NE CZ NH1 NH2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 ARG C 25 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 34 CG CD NE CZ NH1 NH2 REMARK 470 TRP C 59 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 59 CZ3 CH2 REMARK 470 ARG C 68 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 115 CG CD CE NZ REMARK 470 ARG C 117 CG CD NE CZ NH1 NH2 REMARK 470 PHE D 2 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE D 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 4 CG CD OE1 OE2 REMARK 470 PHE E 2 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE E 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU E 4 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN D 7 C SNN D 8 N 0.295 REMARK 500 GLN E 7 C SNN E 8 N 0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 25 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 27 -10.68 -142.74 REMARK 500 ILE A 31 -52.94 -122.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 CYS A 27 SG 114.8 REMARK 620 3 CYS A 90 SG 108.1 100.9 REMARK 620 4 CYS A 93 SG 107.3 114.2 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 24 SG REMARK 620 2 CYS B 27 SG 114.6 REMARK 620 3 CYS B 90 SG 111.1 104.7 REMARK 620 4 CYS B 93 SG 99.3 116.2 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 24 SG REMARK 620 2 CYS C 27 SG 113.4 REMARK 620 3 CYS C 90 SG 109.6 99.5 REMARK 620 4 CYS C 93 SG 107.8 112.8 113.6 REMARK 620 N 1 2 3 DBREF 8C3H A 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8C3H B 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8C3H C 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8C3H D 1 8 UNP P05067 A4_HUMAN 763 770 DBREF 8C3H E 1 8 UNP P05067 A4_HUMAN 763 770 SEQRES 1 A 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 A 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 A 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 A 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 A 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 A 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 A 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 A 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 A 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 A 124 LEU ALA GLU GLY PRO ALA ASP SEQRES 1 B 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 B 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 B 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 B 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 B 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 B 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 B 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 B 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 B 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 B 124 LEU ALA GLU GLY PRO ALA ASP SEQRES 1 C 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 C 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 C 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 C 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 C 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 C 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 C 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 C 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 C 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 C 124 LEU ALA GLU GLY PRO ALA ASP SEQRES 1 D 8 LYS PHE PHE GLU GLN MET GLN SNN SEQRES 1 E 8 LYS PHE PHE GLU GLN MET GLN SNN MODRES 8C3H SNN D 8 ASN MODIFIED RESIDUE MODRES 8C3H SNN E 8 ASN MODIFIED RESIDUE HET SNN D 8 8 HET SNN E 8 8 HET ZN A 201 1 HET ZN B 201 1 HET ZN C 201 1 HETNAM SNN L-3-AMINOSUCCINIMIDE HETNAM ZN ZINC ION FORMUL 4 SNN 2(C4 H6 N2 O2) FORMUL 6 ZN 3(ZN 2+) FORMUL 9 HOH *73(H2 O) HELIX 1 AA1 ASP A 35 LEU A 37 5 3 HELIX 2 AA2 PRO A 39 ASP A 43 5 5 HELIX 3 AA3 ASP B 35 LEU B 37 5 3 HELIX 4 AA4 PRO B 39 ASP B 43 5 5 HELIX 5 AA5 ASP C 35 LEU C 37 5 3 HELIX 6 AA6 PHE D 3 GLN D 7 1 5 HELIX 7 AA7 PHE E 3 GLN E 7 1 5 SHEET 1 AA1 3 THR A 30 ARG A 33 0 SHEET 2 AA1 3 ILE A 21 CYS A 24 -1 N PHE A 22 O SER A 32 SHEET 3 AA1 3 LEU A 118 GLY A 121 -1 O GLY A 121 N ILE A 21 SHEET 1 AA2 6 GLU A 45 PHE A 49 0 SHEET 2 AA2 6 ILE A 55 PHE A 61 -1 O VAL A 58 N HIS A 46 SHEET 3 AA2 6 PHE A 110 ILE A 114 -1 O PHE A 111 N PHE A 61 SHEET 4 AA2 6 HIS A 96 GLU A 102 -1 N TYR A 101 O PHE A 110 SHEET 5 AA2 6 ASP A 84 CYS A 90 -1 N ASP A 84 O GLU A 102 SHEET 6 AA2 6 LEU A 67 SER A 74 -1 N SER A 74 O TRP A 85 SHEET 1 AA3 3 THR B 30 ARG B 33 0 SHEET 2 AA3 3 ILE B 21 CYS B 24 -1 N PHE B 22 O SER B 32 SHEET 3 AA3 3 LEU B 118 GLY B 121 -1 O GLY B 121 N ILE B 21 SHEET 1 AA4 6 GLU B 45 PHE B 49 0 SHEET 2 AA4 6 ILE B 55 PHE B 61 -1 O VAL B 58 N HIS B 46 SHEET 3 AA4 6 PHE B 110 ILE B 114 -1 O PHE B 111 N PHE B 61 SHEET 4 AA4 6 HIS B 96 GLU B 102 -1 N TYR B 101 O PHE B 110 SHEET 5 AA4 6 ASP B 84 CYS B 90 -1 N ASP B 84 O GLU B 102 SHEET 6 AA4 6 LEU B 67 SER B 74 -1 N SER B 74 O TRP B 85 SHEET 1 AA5 3 THR C 30 ARG C 33 0 SHEET 2 AA5 3 ILE C 21 CYS C 24 -1 N PHE C 22 O SER C 32 SHEET 3 AA5 3 LEU C 118 GLY C 121 -1 O ALA C 119 N ARG C 23 SHEET 1 AA6 5 CYS C 60 PHE C 61 0 SHEET 2 AA6 5 PHE C 111 LEU C 113 -1 O PHE C 111 N PHE C 61 SHEET 3 AA6 5 HIS C 96 TRP C 99 -1 N TRP C 99 O GLY C 112 SHEET 4 AA6 5 ILE C 87 CYS C 90 -1 N ALA C 88 O GLY C 98 SHEET 5 AA6 5 LEU C 67 LEU C 69 -1 N ARG C 68 O LEU C 89 LINK C GLN D 7 N SNN D 8 1555 1555 1.63 LINK C GLN E 7 N SNN E 8 1555 1555 1.52 LINK SG CYS A 24 ZN ZN A 201 1555 1555 2.30 LINK SG CYS A 27 ZN ZN A 201 1555 1555 2.29 LINK SG CYS A 90 ZN ZN A 201 1555 1555 2.38 LINK SG CYS A 93 ZN ZN A 201 1555 1555 2.35 LINK SG CYS B 24 ZN ZN B 201 1555 1555 2.37 LINK SG CYS B 27 ZN ZN B 201 1555 1555 2.34 LINK SG CYS B 90 ZN ZN B 201 1555 1555 2.33 LINK SG CYS B 93 ZN ZN B 201 1555 1555 2.35 LINK SG CYS C 24 ZN ZN C 201 1555 1555 2.36 LINK SG CYS C 27 ZN ZN C 201 1555 1555 2.32 LINK SG CYS C 90 ZN ZN C 201 1555 1555 2.40 LINK SG CYS C 93 ZN ZN C 201 1555 1555 2.32 CISPEP 1 GLN A 106 PRO A 107 0 0.63 CISPEP 2 GLN B 106 PRO B 107 0 1.34 CRYST1 56.256 58.821 88.858 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017776 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011254 0.00000