HEADER TRANSFERASE 28-DEC-22 8C3Q TITLE CRYSTAL STRUCTURE OF DYRK1A IN COMPLEX WITH RUTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 3 1A; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DUAL SPECIFICITY YAK1-RELATED KINASE,HP86,PROTEIN KINASE COMPND 6 MINIBRAIN HOMOLOG,MNBH,HMNB; COMPND 7 EC: 2.7.12.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYRK1A, DYRK, MNB, MNBH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, DIABETES, KINASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GRYGIER,K.PUSTELNY,G.DUBIN,A.CZARNA REVDAT 1 10-JAN-24 8C3Q 0 JRNL AUTH P.GRYGIER,K.PUSTELNY,G.DUBIN,A.CZARNA JRNL TITL CRYSTAL STRUCTURE OF DYRK1A IN COMPLEX WITH RUTIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0000 - 5.5900 0.99 2793 143 0.1534 0.1629 REMARK 3 2 5.5900 - 4.4400 1.00 2752 168 0.1433 0.1756 REMARK 3 3 4.4400 - 3.8800 1.00 2746 162 0.1383 0.1658 REMARK 3 4 3.8800 - 3.5200 1.00 2765 101 0.1564 0.2144 REMARK 3 5 3.5200 - 3.2700 1.00 2796 120 0.1847 0.2064 REMARK 3 6 3.2700 - 3.0800 1.00 2752 129 0.1904 0.2627 REMARK 3 7 3.0800 - 2.9200 1.00 2724 164 0.2190 0.2617 REMARK 3 8 2.9200 - 2.8000 1.00 2703 155 0.2191 0.2785 REMARK 3 9 2.8000 - 2.6900 1.00 2775 127 0.2251 0.2646 REMARK 3 10 2.6900 - 2.6000 1.00 2756 137 0.2206 0.2798 REMARK 3 11 2.6000 - 2.5100 1.00 2737 151 0.2392 0.2492 REMARK 3 12 2.5100 - 2.4400 1.00 2697 155 0.2516 0.2737 REMARK 3 13 2.4400 - 2.3800 1.00 2724 148 0.2678 0.3264 REMARK 3 14 2.3800 - 2.3200 1.00 2706 146 0.2975 0.3214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5696 REMARK 3 ANGLE : 0.890 7730 REMARK 3 CHIRALITY : 0.055 842 REMARK 3 PLANARITY : 0.007 1028 REMARK 3 DIHEDRAL : 15.556 2118 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3189 -6.8384 25.5114 REMARK 3 T TENSOR REMARK 3 T11: 0.3254 T22: 0.2534 REMARK 3 T33: 0.4073 T12: -0.0098 REMARK 3 T13: -0.0487 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 4.6075 L22: 3.9562 REMARK 3 L33: 4.8796 L12: 0.8571 REMARK 3 L13: -0.5750 L23: -1.1681 REMARK 3 S TENSOR REMARK 3 S11: 0.2154 S12: -0.1395 S13: -0.4401 REMARK 3 S21: 0.3546 S22: -0.0569 S23: 0.1067 REMARK 3 S31: 0.0415 S32: -0.2106 S33: -0.1276 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1989 9.4137 16.7506 REMARK 3 T TENSOR REMARK 3 T11: 0.2664 T22: 0.3473 REMARK 3 T33: 0.1994 T12: 0.0419 REMARK 3 T13: 0.0021 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 3.8478 L22: 5.2619 REMARK 3 L33: 2.4584 L12: 1.5296 REMARK 3 L13: -0.4417 L23: -0.8418 REMARK 3 S TENSOR REMARK 3 S11: 0.1554 S12: 0.1314 S13: -0.1183 REMARK 3 S21: 0.2539 S22: -0.0825 S23: -0.1243 REMARK 3 S31: -0.0069 S32: 0.0284 S33: -0.0777 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1126 24.7782 10.3158 REMARK 3 T TENSOR REMARK 3 T11: 0.2972 T22: 0.4704 REMARK 3 T33: 0.4360 T12: 0.0633 REMARK 3 T13: 0.0114 T23: 0.1465 REMARK 3 L TENSOR REMARK 3 L11: 2.4608 L22: 3.1808 REMARK 3 L33: 1.9544 L12: 1.0284 REMARK 3 L13: 0.1801 L23: -0.3489 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.5670 S13: 0.7184 REMARK 3 S21: -0.1886 S22: 0.0459 S23: 0.5964 REMARK 3 S31: -0.1405 S32: -0.1504 S33: 0.0177 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.7892 58.1581 15.4631 REMARK 3 T TENSOR REMARK 3 T11: 0.7133 T22: 0.8379 REMARK 3 T33: 0.6569 T12: 0.0189 REMARK 3 T13: -0.1503 T23: 0.0847 REMARK 3 L TENSOR REMARK 3 L11: 8.0650 L22: 6.8538 REMARK 3 L33: 8.3968 L12: 0.3829 REMARK 3 L13: -1.1600 L23: -3.9863 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: 0.7417 S13: -0.4553 REMARK 3 S21: -1.2978 S22: 0.6934 S23: 1.1683 REMARK 3 S31: 0.8091 S32: -1.7617 S33: -0.5672 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.9398 60.6796 19.7468 REMARK 3 T TENSOR REMARK 3 T11: 0.6539 T22: 0.3924 REMARK 3 T33: 0.4713 T12: 0.1557 REMARK 3 T13: -0.0074 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 3.2546 L22: 5.7922 REMARK 3 L33: 3.8105 L12: 0.1927 REMARK 3 L13: -0.6709 L23: -1.4879 REMARK 3 S TENSOR REMARK 3 S11: 0.0955 S12: 0.1490 S13: 0.0856 REMARK 3 S21: -0.4626 S22: 0.0056 S23: -0.0417 REMARK 3 S31: -0.2126 S32: -0.2935 S33: -0.1673 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.6080 59.5565 30.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.7240 T22: 0.3912 REMARK 3 T33: 0.5026 T12: 0.1850 REMARK 3 T13: 0.0581 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 3.3207 L22: 4.7270 REMARK 3 L33: 3.6504 L12: -0.7277 REMARK 3 L13: -0.0918 L23: -1.2776 REMARK 3 S TENSOR REMARK 3 S11: -0.2461 S12: -0.2064 S13: 0.3080 REMARK 3 S21: 0.3676 S22: 0.3316 S23: 0.1410 REMARK 3 S31: -0.4399 S32: -0.4623 S33: -0.1440 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 245 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7104 51.1583 31.4671 REMARK 3 T TENSOR REMARK 3 T11: 0.6567 T22: 0.3198 REMARK 3 T33: 0.5016 T12: 0.1031 REMARK 3 T13: 0.0140 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 3.9137 L22: 3.9211 REMARK 3 L33: 3.2757 L12: -0.6278 REMARK 3 L13: -0.0194 L23: -0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: -0.0391 S13: -0.0297 REMARK 3 S21: 0.1456 S22: -0.0801 S23: -0.5988 REMARK 3 S31: -0.4757 S32: 0.2048 S33: -0.0068 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.2460 49.4781 37.4371 REMARK 3 T TENSOR REMARK 3 T11: 0.7854 T22: 0.5348 REMARK 3 T33: 0.5767 T12: 0.1388 REMARK 3 T13: 0.1697 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 3.6289 L22: 2.1655 REMARK 3 L33: 3.5992 L12: -1.4329 REMARK 3 L13: 1.7877 L23: 1.0079 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.3962 S13: -0.2812 REMARK 3 S21: 0.5274 S22: -0.2799 S23: 0.5220 REMARK 3 S31: 0.1531 S32: -0.9872 S33: 0.0379 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 322 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3310 32.5530 38.0276 REMARK 3 T TENSOR REMARK 3 T11: 0.5622 T22: 0.4136 REMARK 3 T33: 0.4855 T12: 0.1305 REMARK 3 T13: -0.0412 T23: 0.1047 REMARK 3 L TENSOR REMARK 3 L11: 1.7175 L22: 4.8952 REMARK 3 L33: 1.6774 L12: 1.0328 REMARK 3 L13: -0.0201 L23: -0.5994 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: -0.3456 S13: -0.3423 REMARK 3 S21: 0.6064 S22: -0.1782 S23: -0.3104 REMARK 3 S31: -0.1893 S32: -0.0862 S33: 0.0764 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 403 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3763 25.8398 33.2268 REMARK 3 T TENSOR REMARK 3 T11: 0.6904 T22: 0.4449 REMARK 3 T33: 0.8989 T12: 0.1727 REMARK 3 T13: -0.1000 T23: 0.1130 REMARK 3 L TENSOR REMARK 3 L11: 2.7947 L22: 1.1951 REMARK 3 L33: 3.1164 L12: 1.2319 REMARK 3 L13: -2.2124 L23: -0.4965 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.1626 S13: -0.3018 REMARK 3 S21: 0.4961 S22: -0.1268 S23: -0.8085 REMARK 3 S31: 0.2084 S32: 0.0801 S33: 0.1223 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 437 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9400 43.6710 40.8727 REMARK 3 T TENSOR REMARK 3 T11: 0.7468 T22: 0.4948 REMARK 3 T33: 0.7044 T12: 0.0586 REMARK 3 T13: -0.1888 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.5485 L22: 4.7743 REMARK 3 L33: 3.0220 L12: -0.8301 REMARK 3 L13: -0.0239 L23: 0.5166 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.4288 S13: 0.0623 REMARK 3 S21: 0.5808 S22: 0.1657 S23: -1.1518 REMARK 3 S31: -0.4066 S32: 0.5216 S33: -0.1019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 1.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 0.2 M AMMONIUM REMARK 280 ACETATE, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.57500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.57500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.57500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 LYS A 130 REMARK 465 LYS A 131 REMARK 465 GLU A 132 REMARK 465 ARG A 133 REMARK 465 GLY A 401 REMARK 465 ASP A 410 REMARK 465 GLY A 411 REMARK 465 LYS A 481 REMARK 465 THR A 482 REMARK 465 ALA A 483 REMARK 465 ASP A 484 REMARK 465 GLU A 485 REMARK 465 GLY A 486 REMARK 465 THR A 487 REMARK 465 ASN A 488 REMARK 465 THR A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 ASP B 126 REMARK 465 SER B 127 REMARK 465 SER B 128 REMARK 465 HIS B 129 REMARK 465 LYS B 130 REMARK 465 LYS B 131 REMARK 465 GLU B 132 REMARK 465 ARG B 133 REMARK 465 LYS B 134 REMARK 465 VAL B 135 REMARK 465 THR B 215 REMARK 465 LYS B 481 REMARK 465 THR B 482 REMARK 465 ALA B 483 REMARK 465 ASP B 484 REMARK 465 GLU B 485 REMARK 465 GLY B 486 REMARK 465 THR B 487 REMARK 465 ASN B 488 REMARK 465 THR B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 HIS B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 VAL A 135 CG1 CG2 REMARK 470 LYS A 154 CD CE NZ REMARK 470 LYS A 193 CE NZ REMARK 470 LYS A 194 CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 320 CG CD OE1 NE2 REMARK 470 GLN A 387 OE1 NE2 REMARK 470 LEU A 398 CG CD1 CD2 REMARK 470 ASP A 400 CG OD1 OD2 REMARK 470 THR A 402 OG1 CG2 REMARK 470 ASN A 404 OD1 ND2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 THR A 408 OG1 CG2 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 LYS A 412 CG CD CE NZ REMARK 470 GLU A 414 CG CD OE1 OE2 REMARK 470 LYS A 465 CD CE NZ REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 ASP B 138 CG OD1 OD2 REMARK 470 ASN B 144 CG OD1 ND2 REMARK 470 LYS B 150 CE NZ REMARK 470 LYS B 154 CE NZ REMARK 470 LYS B 167 CD CE NZ REMARK 470 SER B 169 OG REMARK 470 ARG B 179 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 ARG B 205 CD NE CZ NH1 NH2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 MET B 217 CG SD CE REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 ARG B 300 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 316 CG CD OE1 NE2 REMARK 470 ARG B 317 NE CZ NH1 NH2 REMARK 470 GLN B 320 CG CD OE1 NE2 REMARK 470 GLN B 387 CG CD OE1 NE2 REMARK 470 GLU B 396 CG CD OE1 OE2 REMARK 470 LYS B 407 CG CD CE NZ REMARK 470 THR B 408 OG1 CG2 REMARK 470 LYS B 409 CG CD CE NZ REMARK 470 ASP B 410 CG OD1 OD2 REMARK 470 LYS B 412 CD CE NZ REMARK 470 LYS B 422 CE NZ REMARK 470 LYS B 465 CD CE NZ REMARK 470 LYS B 480 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 158 -53.60 -143.00 REMARK 500 ASP A 287 43.92 -156.02 REMARK 500 ASP A 307 75.86 72.21 REMARK 500 GLN A 323 147.49 70.77 REMARK 500 ASP A 339 -158.23 -144.73 REMARK 500 SER A 362 66.50 -101.26 REMARK 500 ASP B 142 -157.72 -127.00 REMARK 500 ASP B 157 18.90 59.55 REMARK 500 ASP B 287 44.52 -155.05 REMARK 500 ASP B 307 80.91 66.16 REMARK 500 GLN B 323 169.23 74.43 REMARK 500 ASP B 339 -158.49 -135.77 REMARK 500 SER B 362 63.68 -109.15 REMARK 500 LYS B 409 -173.23 74.09 REMARK 500 HIS B 444 25.90 -144.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 8C3Q A 126 489 UNP Q13627 DYR1A_HUMAN 126 489 DBREF 8C3Q B 126 489 UNP Q13627 DYR1A_HUMAN 126 489 SEQADV 8C3Q HIS A 490 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS A 491 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS A 492 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS A 493 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS A 494 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS A 495 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS B 490 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS B 491 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS B 492 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS B 493 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS B 494 UNP Q13627 EXPRESSION TAG SEQADV 8C3Q HIS B 495 UNP Q13627 EXPRESSION TAG SEQRES 1 A 370 ASP SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN ASP SEQRES 2 A 370 GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS ASN SEQRES 3 A 370 GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER LEU SEQRES 4 A 370 ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR SEQRES 5 A 370 ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE ILE SEQRES 6 A 370 LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE GLU SEQRES 7 A 370 VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR GLU SEQRES 8 A 370 MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE MET SEQRES 9 A 370 PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SER SEQRES 10 A 370 TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE ARG SEQRES 11 A 370 GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN GLN SEQRES 12 A 370 MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU LEU SEQRES 13 A 370 SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 14 A 370 LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL ASP SEQRES 15 A 370 PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR GLN SEQRES 16 A 370 PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL LEU SEQRES 17 A 370 LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SER SEQRES 18 A 370 LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU PRO SEQRES 19 A 370 LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN LYS SEQRES 20 A 370 ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE LEU SEQRES 21 A 370 ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS LEU SEQRES 22 A 370 PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP GLY SEQRES 23 A 370 LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU HIS SEQRES 24 A 370 ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY ARG SEQRES 25 A 370 ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR LEU SEQRES 26 A 370 LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR ASP SEQRES 27 A 370 PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN HIS SEQRES 28 A 370 SER PHE PHE LYS LYS THR ALA ASP GLU GLY THR ASN THR SEQRES 29 A 370 HIS HIS HIS HIS HIS HIS SEQRES 1 B 370 ASP SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN ASP SEQRES 2 B 370 GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS ASN SEQRES 3 B 370 GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER LEU SEQRES 4 B 370 ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR SEQRES 5 B 370 ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE ILE SEQRES 6 B 370 LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE GLU SEQRES 7 B 370 VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR GLU SEQRES 8 B 370 MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE MET SEQRES 9 B 370 PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SER SEQRES 10 B 370 TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE ARG SEQRES 11 B 370 GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN GLN SEQRES 12 B 370 MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU LEU SEQRES 13 B 370 SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 14 B 370 LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL ASP SEQRES 15 B 370 PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR GLN SEQRES 16 B 370 PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL LEU SEQRES 17 B 370 LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SER SEQRES 18 B 370 LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU PRO SEQRES 19 B 370 LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN LYS SEQRES 20 B 370 ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE LEU SEQRES 21 B 370 ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS LEU SEQRES 22 B 370 PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP GLY SEQRES 23 B 370 LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU HIS SEQRES 24 B 370 ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY ARG SEQRES 25 B 370 ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR LEU SEQRES 26 B 370 LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR ASP SEQRES 27 B 370 PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN HIS SEQRES 28 B 370 SER PHE PHE LYS LYS THR ALA ASP GLU GLY THR ASN THR SEQRES 29 B 370 HIS HIS HIS HIS HIS HIS MODRES 8C3Q PTR A 321 TYR MODIFIED RESIDUE MODRES 8C3Q PTR B 321 TYR MODIFIED RESIDUE HET PTR A 321 16 HET PTR B 321 16 HET RUT A 501 43 HET RUT B 501 43 HETNAM PTR O-PHOSPHOTYROSINE HETNAM RUT RUTIN HETSYN PTR PHOSPHONOTYROSINE HETSYN RUT 2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4-OXO-4H-CHROMEN- HETSYN 2 RUT 3-YL 6-O-(6-DEOXY-ALPHA-L-MANNOPYRANOSYL)-BETA-D- HETSYN 3 RUT GLUCOPYRANOSIDE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 RUT 2(C27 H30 O16) FORMUL 5 HOH *190(H2 O) HELIX 1 AA1 TYR A 136 TYR A 140 5 5 HELIX 2 AA2 LYS A 193 LYS A 212 1 20 HELIX 3 AA3 LEU A 245 THR A 252 1 8 HELIX 4 AA4 SER A 258 ALA A 277 1 20 HELIX 5 AA5 LYS A 289 GLU A 291 5 3 HELIX 6 AA6 SER A 324 ARG A 328 5 5 HELIX 7 AA7 SER A 329 LEU A 334 1 6 HELIX 8 AA8 LEU A 340 GLY A 357 1 18 HELIX 9 AA9 ASN A 365 GLY A 378 1 14 HELIX 10 AB1 PRO A 381 ASP A 386 1 6 HELIX 11 AB2 LYS A 390 LYS A 393 5 4 HELIX 12 AB3 LYS A 422 LEU A 427 1 6 HELIX 13 AB4 GLY A 433 ARG A 437 5 5 HELIX 14 AB5 THR A 445 LEU A 460 1 16 HELIX 15 AB6 GLN A 469 GLN A 475 1 7 HELIX 16 AB7 LYS B 193 LYS B 212 1 20 HELIX 17 AB8 ASN B 244 THR B 252 1 9 HELIX 18 AB9 SER B 258 ALA B 277 1 20 HELIX 19 AC1 LYS B 289 GLU B 291 5 3 HELIX 20 AC2 SER B 324 ARG B 328 5 5 HELIX 21 AC3 SER B 329 LEU B 334 1 6 HELIX 22 AC4 LEU B 340 GLY B 357 1 18 HELIX 23 AC5 ASN B 365 GLY B 378 1 14 HELIX 24 AC6 PRO B 381 GLN B 387 1 7 HELIX 25 AC7 LYS B 390 PHE B 394 1 5 HELIX 26 AC8 LYS B 422 LEU B 427 1 6 HELIX 27 AC9 GLY B 433 ARG B 437 5 5 HELIX 28 AD1 THR B 445 LEU B 460 1 16 HELIX 29 AD2 GLN B 469 LEU B 474 1 6 HELIX 30 AD3 GLN B 475 LYS B 480 5 6 SHEET 1 AA1 6 LYS A 154 TRP A 155 0 SHEET 2 AA1 6 TYR A 159 GLY A 168 -1 O TYR A 159 N TRP A 155 SHEET 3 AA1 6 GLY A 171 ASP A 178 -1 O LYS A 175 N ASP A 162 SHEET 4 AA1 6 GLU A 183 ILE A 190 -1 O ILE A 189 N GLN A 172 SHEET 5 AA1 6 HIS A 233 GLU A 239 -1 O PHE A 238 N ALA A 186 SHEET 6 AA1 6 ARG A 226 PHE A 230 -1 N ARG A 226 O VAL A 237 SHEET 1 AA2 3 TYR A 243 ASN A 244 0 SHEET 2 AA2 3 ILE A 293 LEU A 295 -1 O LEU A 295 N TYR A 243 SHEET 3 AA2 3 ILE A 303 ILE A 305 -1 O LYS A 304 N LEU A 294 SHEET 1 AA3 2 ILE A 283 ILE A 284 0 SHEET 2 AA3 2 CYS A 312 GLN A 313 -1 O CYS A 312 N ILE A 284 SHEET 1 AA4 2 PHE A 395 LYS A 397 0 SHEET 2 AA4 2 TRP A 403 LEU A 405 -1 O ASN A 404 N GLU A 396 SHEET 1 AA5 6 LYS B 154 TRP B 155 0 SHEET 2 AA5 6 TYR B 159 LYS B 167 -1 O TYR B 159 N TRP B 155 SHEET 3 AA5 6 GLY B 171 ASP B 178 -1 O VAL B 173 N ILE B 165 SHEET 4 AA5 6 GLU B 183 ILE B 190 -1 O VAL B 185 N ALA B 176 SHEET 5 AA5 6 HIS B 233 GLU B 239 -1 O PHE B 238 N ALA B 186 SHEET 6 AA5 6 ARG B 226 PHE B 230 -1 N PHE B 228 O CYS B 235 SHEET 1 AA6 2 ILE B 283 ILE B 284 0 SHEET 2 AA6 2 CYS B 312 GLN B 313 -1 O CYS B 312 N ILE B 284 SHEET 1 AA7 2 ILE B 293 LEU B 295 0 SHEET 2 AA7 2 ILE B 303 ILE B 305 -1 O LYS B 304 N LEU B 294 SHEET 1 AA8 2 PHE B 395 LYS B 397 0 SHEET 2 AA8 2 TRP B 403 LEU B 405 -1 O ASN B 404 N GLU B 396 LINK C GLN A 320 N PTR A 321 1555 1555 1.35 LINK C PTR A 321 N ILE A 322 1555 1555 1.33 LINK C GLN B 320 N PTR B 321 1555 1555 1.33 LINK C PTR B 321 N ILE B 322 1555 1555 1.32 CRYST1 134.187 134.187 91.150 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007452 0.004303 0.000000 0.00000 SCALE2 0.000000 0.008605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010971 0.00000