HEADER ISOMERASE 30-DEC-22 8C41 TITLE HIGH RESOLUTION STRUCTURE OF THE STREPTOCOCCUS PNEUMONIAE TITLE 2 TOPOISOMERASE IV-DNA COMPLEX WITH THE NOVEL FLUOROQUINOLONE TITLE 3 DELAFLOXACIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSED PARE30PARC55 CLEAVAGE COMPLEX OF THE TOPOISOMERASE COMPND 3 IV; COMPND 4 CHAIN: A, B; COMPND 5 EC: 5.99.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THE FUSED TOPOISOMERASE IV CLEAVAGE COMPLEX COMPRISES COMPND 9 THE C-TERMINAL DOMAIN OF THE PARE30 DOMAIN (RESIDUES 415-647), A HIS COMPND 10 INSERT AT POSITION 648 AND THE N-TERMINAL DOMAIN OF PARC55 (RESIDUES COMPND 11 1001-1486); COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: DNA (5'-D(*CP*AP*TP*GP*AP*AP*T)-3'); COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3'); COMPND 18 CHAIN: F; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: CLEAVED FROM THE E18 MER OLIGO AGTCATTCATGACCTTGGT; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: DNA (5'-D(*CP*GP*TP*GP*CP*AP*T)-3'); COMPND 23 CHAIN: G; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 5; COMPND 26 MOLECULE: DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3'); COMPND 27 CHAIN: H; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: 7785; SOURCE 5 GENE: SP_0852-SP_0855; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 13 ORGANISM_TAXID: 2853804; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 17 ORGANISM_TAXID: 2853804; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 21 ORGANISM_TAXID: 2853804; SOURCE 22 MOL_ID: 5; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 25 ORGANISM_TAXID: 2853804 KEYWDS PROTEIN-DNA CLEAVAGE COMPLEX, TOPOISOMERASE IIA, DELAFLOXACIN, KEYWDS 2 TOPOISOMERASE IV-DNA-ANTIBIOTIC COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NAJMUDIN,X.S.PAN,B.WANG,N.E.CHAYEN,L.M.FISHER,M.R.SANDERSON REVDAT 2 24-JAN-24 8C41 1 AUTHOR JRNL REVDAT 1 10-JAN-24 8C41 0 JRNL AUTH S.NAJMUDIN,X.S.PAN,B.WANG,N.E.CHAYEN,L.M.FISHER, JRNL AUTH 2 M.R.SANDERSON JRNL TITL THE NATURE OF THE MOLECULAR INTERACTIONS AT HIGH RESOLUTION JRNL TITL 2 OF THE STREPTOCOCCUS PNEUMONIAE TOPOISOMERASE IV-DNA COMPLEX JRNL TITL 3 WITH THE NOVEL FLUOROQUINOLONE DELAFLOXACIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 115.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 58.9 REMARK 3 NUMBER OF REFLECTIONS : 70682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.892 REMARK 3 FREE R VALUE TEST SET COUNT : 3458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.8100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11460 REMARK 3 NUCLEIC ACID ATOMS : 732 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48900 REMARK 3 B22 (A**2) : -0.48900 REMARK 3 B33 (A**2) : 1.58600 REMARK 3 B12 (A**2) : -0.24400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.492 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12573 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 11491 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 17121 ; 1.540 ; 1.664 REMARK 3 BOND ANGLES OTHERS (DEGREES): 26821 ; 0.477 ; 1.565 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1442 ; 7.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ; 8.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2213 ;17.252 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1908 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13737 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2319 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2612 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 49 ; 0.231 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5945 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 413 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5762 ; 2.830 ; 2.490 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5762 ; 2.829 ; 2.490 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7200 ; 4.711 ; 3.718 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 7201 ; 4.710 ; 3.719 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6811 ; 2.386 ; 2.643 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6811 ; 2.386 ; 2.643 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 9915 ; 4.067 ; 3.884 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 9916 ; 4.067 ; 3.884 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 1486 REMARK 3 ORIGIN FOR THE GROUP (A): -47.0966 59.6239 -36.4731 REMARK 3 T TENSOR REMARK 3 T11: 0.3106 T22: 0.3613 REMARK 3 T33: 0.3217 T12: 0.0224 REMARK 3 T13: 0.0220 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1489 L22: 0.0248 REMARK 3 L33: 0.3522 L12: -0.0133 REMARK 3 L13: -0.1736 L23: 0.0286 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: 0.0016 S13: 0.0085 REMARK 3 S21: -0.0365 S22: 0.0166 S23: 0.0696 REMARK 3 S31: 0.0541 S32: 0.1316 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 415 B 1486 REMARK 3 ORIGIN FOR THE GROUP (A): -53.2256 67.7766 -0.1111 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.3394 REMARK 3 T33: 0.3018 T12: 0.0006 REMARK 3 T13: 0.0140 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0938 L22: 0.1531 REMARK 3 L33: 0.1685 L12: 0.0912 REMARK 3 L13: -0.0391 L23: -0.0101 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: -0.0520 S13: -0.0726 REMARK 3 S21: 0.0130 S22: -0.0243 S23: 0.0332 REMARK 3 S31: -0.0790 S32: 0.0447 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 7 REMARK 3 ORIGIN FOR THE GROUP (A): -36.7923 69.0977 -35.7169 REMARK 3 T TENSOR REMARK 3 T11: 0.2905 T22: 0.4293 REMARK 3 T33: 0.1213 T12: -0.0925 REMARK 3 T13: -0.0091 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.3733 L22: 4.9781 REMARK 3 L33: 0.2865 L12: -3.4290 REMARK 3 L13: -0.8224 L23: 1.1894 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: -0.1537 S13: 0.2430 REMARK 3 S21: 0.0359 S22: 0.1490 S23: -0.3301 REMARK 3 S31: -0.0009 S32: 0.0563 S33: -0.0957 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 11 REMARK 3 RESIDUE RANGE : F 101 F 101 REMARK 3 ORIGIN FOR THE GROUP (A): -33.0983 70.2698 -31.7423 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.5215 REMARK 3 T33: 0.1628 T12: 0.0418 REMARK 3 T13: 0.1848 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.5406 L22: 0.6399 REMARK 3 L33: 0.7592 L12: 1.5003 REMARK 3 L13: 1.6242 L23: 0.6955 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: -0.0896 S13: 0.3181 REMARK 3 S21: -0.0133 S22: -0.0354 S23: 0.1217 REMARK 3 S31: -0.0028 S32: 0.0280 S33: 0.1041 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 7 REMARK 3 ORIGIN FOR THE GROUP (A): -40.1064 72.8630 -0.2920 REMARK 3 T TENSOR REMARK 3 T11: 0.2971 T22: 0.4293 REMARK 3 T33: 0.3343 T12: -0.0902 REMARK 3 T13: 0.0570 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 1.9785 L22: 7.4564 REMARK 3 L33: 0.1384 L12: -3.5979 REMARK 3 L13: -0.5124 L23: 0.8668 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: -0.0506 S13: -0.0518 REMARK 3 S21: -0.2184 S22: -0.0004 S23: -0.4123 REMARK 3 S31: 0.0329 S32: 0.0347 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 11 REMARK 3 RESIDUE RANGE : H 101 H 101 REMARK 3 ORIGIN FOR THE GROUP (A): -37.2918 75.7402 -4.1765 REMARK 3 T TENSOR REMARK 3 T11: 0.4605 T22: 0.4268 REMARK 3 T33: 0.1930 T12: 0.0444 REMARK 3 T13: 0.0132 T23: -0.1216 REMARK 3 L TENSOR REMARK 3 L11: 4.6430 L22: 1.5591 REMARK 3 L33: 1.6959 L12: 2.6801 REMARK 3 L13: -2.7930 L23: -1.6024 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.0990 S13: -0.3177 REMARK 3 S21: -0.0382 S22: -0.1131 S23: -0.2022 REMARK 3 S31: -0.0549 S32: 0.0703 S33: 0.1373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8C41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS, XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS, STARANISO V3.347 1-SEP REMARK 200 -2022 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70836 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.393 REMARK 200 RESOLUTION RANGE LOW (A) : 115.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 60.80 REMARK 200 R MERGE (I) : 0.56400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 49.50 REMARK 200 R MERGE FOR SHELL (I) : 4.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5% TACSIMATE, 50 MM NA CACODYLATE, REMARK 280 62.5 MM KCL, 7.5 MM MGCL2, 4-7.5% ISOPROPANOL. 30% MPD AS REMARK 280 CRYOPROTECTANT, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.77967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.55933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 141.55933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.77967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1774 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 403 REMARK 465 LYS A 404 REMARK 465 ASN A 405 REMARK 465 LYS A 406 REMARK 465 LYS A 407 REMARK 465 ASP A 408 REMARK 465 LYS A 409 REMARK 465 GLY A 410 REMARK 465 LEU A 411 REMARK 465 LEU A 412 REMARK 465 SER A 413 REMARK 465 GLY A 414 REMARK 465 LYS A 1487 REMARK 465 ALA A 1488 REMARK 465 LEU A 1489 REMARK 465 GLU A 1490 REMARK 465 HIS A 1491 REMARK 465 HIS A 1492 REMARK 465 HIS A 1493 REMARK 465 HIS A 1494 REMARK 465 HIS A 1495 REMARK 465 HIS A 1496 REMARK 465 MET B 403 REMARK 465 LYS B 404 REMARK 465 ASN B 405 REMARK 465 LYS B 406 REMARK 465 LYS B 407 REMARK 465 ASP B 408 REMARK 465 LYS B 409 REMARK 465 GLY B 410 REMARK 465 LEU B 411 REMARK 465 LEU B 412 REMARK 465 SER B 413 REMARK 465 GLY B 414 REMARK 465 LYS B 1487 REMARK 465 ALA B 1488 REMARK 465 LEU B 1489 REMARK 465 GLU B 1490 REMARK 465 HIS B 1491 REMARK 465 HIS B 1492 REMARK 465 HIS B 1493 REMARK 465 HIS B 1494 REMARK 465 HIS B 1495 REMARK 465 HIS B 1496 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 1393 OD1 ASP B 1386 1.38 REMARK 500 HH12 ARG A 1235 O3' DG F 11 1.51 REMARK 500 OH TYR B 1118 P DG H 1 1.57 REMARK 500 OH TYR A 1118 P DA F 1 1.59 REMARK 500 H ALA B 1217 OE1 GLU B 1258 1.59 REMARK 500 OD2 ASP B 508 O HOH B 1601 1.92 REMARK 500 NH1 ARG A 1222 OD1 ASP A 1484 2.04 REMARK 500 OD2 ASP A 508 O HOH A 1601 2.11 REMARK 500 OE1 GLU B 1252 OG1 THR B 1308 2.16 REMARK 500 OH TYR B 1118 O5' DG H 1 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B1403 CD GLU B1403 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1443 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A1468 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 DT E 3 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DA F 5 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 DG G 4 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG G 4 C3' - O3' - P ANGL. DEV. = -7.2 DEGREES REMARK 500 DA H 2 C3' - O3' - P ANGL. DEV. = -7.7 DEGREES REMARK 500 DC H 3 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DC H 3 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC H 3 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 423 68.18 -176.49 REMARK 500 PRO A 424 -8.87 -34.35 REMARK 500 ASN A 427 150.06 -48.28 REMARK 500 ARG A 456 58.52 -68.22 REMARK 500 LYS A 466 -91.88 -59.43 REMARK 500 MET A 467 -40.10 161.79 REMARK 500 ALA A 489 -63.74 103.72 REMARK 500 ASP A 506 155.97 -45.52 REMARK 500 ALA A 507 41.58 -91.09 REMARK 500 MET A 526 45.49 -170.03 REMARK 500 ALA A 538 -71.35 -41.92 REMARK 500 LEU A 539 86.78 43.12 REMARK 500 SER A 546 167.25 98.58 REMARK 500 LYS A 547 119.58 -166.57 REMARK 500 LYS A 549 -87.63 101.56 REMARK 500 GLU A 553 56.49 30.13 REMARK 500 GLU A 554 82.04 -155.97 REMARK 500 GLN A 570 113.87 179.75 REMARK 500 PHE A 571 89.52 -57.87 REMARK 500 LYS A 573 -166.16 -168.97 REMARK 500 GLU A 642 -150.16 -96.14 REMARK 500 MET A1001 -146.01 -108.40 REMARK 500 ASN A1003 -114.06 12.90 REMARK 500 ARG A1028 -66.72 -156.77 REMARK 500 PHE A1073 -42.47 -134.36 REMARK 500 ASP A1133 34.25 73.20 REMARK 500 ASN A1144 -171.66 -67.05 REMARK 500 ALA A1157 72.20 59.29 REMARK 500 SER A1167 137.93 -170.22 REMARK 500 SER A1171 -143.23 -116.90 REMARK 500 ALA A1217 -171.38 82.63 REMARK 500 TYR A1261 130.37 -39.75 REMARK 500 GLU A1262 13.00 90.70 REMARK 500 ASN A1279 60.60 37.70 REMARK 500 ASP A1305 70.57 55.67 REMARK 500 PHE A1335 -6.10 67.83 REMARK 500 ASP A1410 31.14 78.57 REMARK 500 ASN B 423 78.57 -178.00 REMARK 500 PRO B 424 -7.34 -51.98 REMARK 500 GLU B 433 99.65 -68.04 REMARK 500 LYS B 466 -100.59 -74.99 REMARK 500 MET B 467 -31.08 -168.43 REMARK 500 ASP B 506 157.34 -43.78 REMARK 500 ALA B 507 42.07 -92.26 REMARK 500 MET B 526 44.24 -156.35 REMARK 500 LYS B 549 -140.21 75.36 REMARK 500 LYS B 551 -98.63 94.45 REMARK 500 LYS B 552 -82.89 -81.53 REMARK 500 GLU B 553 -26.58 -147.12 REMARK 500 ALA B 558 142.29 -170.69 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 447 0.10 SIDE CHAIN REMARK 500 ARG A 456 0.08 SIDE CHAIN REMARK 500 ARG A1276 0.11 SIDE CHAIN REMARK 500 ARG A1353 0.10 SIDE CHAIN REMARK 500 ARG A1426 0.09 SIDE CHAIN REMARK 500 ARG A1457 0.08 SIDE CHAIN REMARK 500 ARG B 527 0.08 SIDE CHAIN REMARK 500 ARG B1239 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1795 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 506 OD2 REMARK 620 2 ASP A 508 OD2 70.9 REMARK 620 3 HOH A1601 O 66.9 45.3 REMARK 620 4 HOH A1612 O 73.7 56.5 99.4 REMARK 620 5 HOH A1645 O 129.3 58.4 76.9 78.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A1316 O REMARK 620 2 LYS A1317 O 75.5 REMARK 620 3 THR A1319 O 75.5 99.1 REMARK 620 4 GLN A1322 O 81.9 156.7 80.4 REMARK 620 5 HOH A1684 O 156.4 107.6 81.0 95.4 REMARK 620 6 HOH A1777 O 120.5 95.7 160.7 90.7 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1739 O REMARK 620 2 HOH E 101 O 122.2 REMARK 620 3 TE9 F 101 O1 155.9 64.9 REMARK 620 4 TE9 F 101 O3 132.9 82.6 68.3 REMARK 620 5 HOH F 202 O 104.2 132.7 69.0 71.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 506 OD2 REMARK 620 2 ASP B 508 OD2 72.7 REMARK 620 3 HOH B1601 O 59.2 40.0 REMARK 620 4 HOH B1606 O 124.4 51.7 76.4 REMARK 620 5 HOH B1621 O 74.3 56.4 90.8 74.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B1316 O REMARK 620 2 LYS B1317 O 72.2 REMARK 620 3 THR B1319 O 81.1 103.0 REMARK 620 4 GLN B1322 O 85.3 156.2 80.4 REMARK 620 5 HOH B1754 O 146.3 88.3 76.8 115.2 REMARK 620 6 HOH B1776 O 120.1 102.4 151.0 82.0 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1602 O REMARK 620 2 HOH G 101 O 99.6 REMARK 620 3 TE9 H 101 O2 90.7 59.7 REMARK 620 4 TE9 H 101 O3 151.0 63.8 60.6 REMARK 620 5 HOH H 202 O 111.8 117.4 67.0 62.8 REMARK 620 N 1 2 3 4 DBREF 8C41 A 403 1496 PDB 8C41 8C41 403 1496 DBREF 8C41 B 403 1496 PDB 8C41 8C41 403 1496 DBREF 8C41 E 1 7 PDB 8C41 8C41 1 7 DBREF 8C41 F 1 11 PDB 8C41 8C41 1 11 DBREF 8C41 G 1 7 PDB 8C41 8C41 1 7 DBREF 8C41 H 1 11 PDB 8C41 8C41 1 11 SEQRES 1 A 742 MET LYS ASN LYS LYS ASP LYS GLY LEU LEU SER GLY LYS SEQRES 2 A 742 LEU THR PRO ALA GLN SER LYS ASN PRO ALA LYS ASN GLU SEQRES 3 A 742 LEU TYR LEU VAL GLU GLY ASP SER ALA GLY GLY SER ALA SEQRES 4 A 742 LYS GLN GLY ARG ASP ARG LYS PHE GLN ALA ILE LEU PRO SEQRES 5 A 742 LEU ARG GLY LYS VAL ILE ASN THR ALA LYS ALA LYS MET SEQRES 6 A 742 ALA ASP ILE LEU LYS ASN GLU GLU ILE ASN THR MET ILE SEQRES 7 A 742 TYR THR ILE GLY ALA GLY VAL GLY ALA ASP PHE SER ILE SEQRES 8 A 742 GLU ASP ALA ASN TYR ASP LYS ILE ILE ILE MET THR ASP SEQRES 9 A 742 ALA ASP THR ASP GLY ALA HIS ILE GLN THR LEU LEU LEU SEQRES 10 A 742 THR PHE PHE TYR ARG TYR MET ARG PRO LEU VAL GLU ALA SEQRES 11 A 742 GLY HIS VAL TYR ILE ALA LEU PRO PRO LEU TYR LYS MET SEQRES 12 A 742 SER LYS GLY LYS GLY LYS LYS GLU GLU VAL ALA TYR ALA SEQRES 13 A 742 TRP THR ASP GLY GLU LEU GLU GLU LEU ARG LYS GLN PHE SEQRES 14 A 742 GLY LYS GLY ALA THR LEU GLN ARG TYR LYS GLY LEU GLY SEQRES 15 A 742 GLU MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN SEQRES 16 A 742 PRO GLU THR ARG THR LEU ILE ARG VAL THR ILE GLU ASP SEQRES 17 A 742 LEU ALA ARG ALA GLU ARG ARG VAL ASN VAL LEU MET GLY SEQRES 18 A 742 ASP LYS VAL GLU PRO ARG ARG LYS TRP ILE GLU ASP ASN SEQRES 19 A 742 VAL LYS PHE THR LEU GLU GLU ALA THR VAL PHE HIS MET SEQRES 20 A 742 SER ASN ILE GLN ASN MET SER LEU GLU ASP ILE MET GLY SEQRES 21 A 742 GLU ARG PHE GLY ARG TYR SER LYS TYR ILE ILE GLN ASP SEQRES 22 A 742 ARG ALA LEU PRO ASP ILE ARG ASP GLY LEU LYS PRO VAL SEQRES 23 A 742 GLN ARG ARG ILE LEU TYR SER MET ASN LYS ASP SER ASN SEQRES 24 A 742 THR PHE ASP LYS SER TYR ARG LYS SER ALA LYS SER VAL SEQRES 25 A 742 GLY ASN ILE MET GLY ASN PHE HIS PRO HIS GLY ASP SER SEQRES 26 A 742 SER ILE TYR ASP ALA MET VAL ARG MET SER GLN ASN TRP SEQRES 27 A 742 LYS ASN ARG GLU ILE LEU VAL GLU MET HIS GLY ASN ASN SEQRES 28 A 742 GLY SER MET ASP GLY ASP PRO PRO ALA ALA MET ARG TYR SEQRES 29 A 742 THR GLU ALA ARG LEU SER GLU ILE ALA GLY TYR LEU LEU SEQRES 30 A 742 GLN ASP ILE GLU LYS LYS THR VAL PRO PHE ALA TRP ASN SEQRES 31 A 742 PHE ASP ASP THR GLU LYS GLU PRO THR VAL LEU PRO ALA SEQRES 32 A 742 ALA PHE PRO ASN LEU LEU VAL ASN GLY SER THR GLY ILE SEQRES 33 A 742 SER ALA GLY TYR ALA THR ASP ILE PRO PRO HIS ASN LEU SEQRES 34 A 742 ALA GLU VAL ILE ASP ALA ALA VAL TYR MET ILE ASP HIS SEQRES 35 A 742 PRO THR ALA LYS ILE ASP LYS LEU MET GLU PHE LEU PRO SEQRES 36 A 742 GLY PRO ASP PHE PRO THR GLY ALA ILE ILE GLN GLY ARG SEQRES 37 A 742 ASP GLU ILE LYS LYS ALA TYR GLU THR GLY LYS GLY ARG SEQRES 38 A 742 VAL VAL VAL ARG SER LYS THR GLU ILE GLU LYS LEU LYS SEQRES 39 A 742 GLY GLY LYS GLU GLN ILE VAL ILE THR GLU ILE PRO TYR SEQRES 40 A 742 GLU ILE ASN LYS ALA ASN LEU VAL LYS LYS ILE ASP ASP SEQRES 41 A 742 VAL ARG VAL ASN ASN LYS VAL ALA GLY ILE ALA GLU VAL SEQRES 42 A 742 ARG ASP GLU SER ASP ARG ASP GLY LEU ARG ILE ALA ILE SEQRES 43 A 742 GLU LEU LYS LYS ASP ALA ASN THR GLU LEU VAL LEU ASN SEQRES 44 A 742 TYR LEU PHE LYS TYR THR ASP LEU GLN ILE ASN TYR ASN SEQRES 45 A 742 PHE ASN MET VAL ALA ILE ASP ASN PHE THR PRO ARG GLN SEQRES 46 A 742 VAL GLY ILE VAL PRO ILE LEU SER SER TYR ILE ALA HIS SEQRES 47 A 742 ARG ARG GLU VAL ILE LEU ALA ARG SER ARG PHE ASP LYS SEQRES 48 A 742 GLU LYS ALA GLU LYS ARG LEU HIS ILE VAL GLU GLY LEU SEQRES 49 A 742 ILE ARG VAL ILE SER ILE LEU ASP GLU VAL ILE ALA LEU SEQRES 50 A 742 ILE ARG ALA SER GLU ASN LYS ALA ASP ALA LYS GLU ASN SEQRES 51 A 742 LEU LYS VAL SER TYR ASP PHE THR GLU GLU GLN ALA GLU SEQRES 52 A 742 ALA ILE VAL THR LEU GLN LEU TYR ARG LEU THR ASN THR SEQRES 53 A 742 ASP VAL VAL VAL LEU GLN GLU GLU GLU ALA GLU LEU ARG SEQRES 54 A 742 GLU LYS ILE ALA MET LEU ALA ALA ILE ILE GLY ASP GLU SEQRES 55 A 742 ARG THR MET TYR ASN LEU MET LYS LYS GLU LEU ARG GLU SEQRES 56 A 742 VAL LYS LYS LYS PHE ALA THR PRO ARG LEU SER SER LEU SEQRES 57 A 742 GLU ASP THR ALA LYS ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 58 A 742 HIS SEQRES 1 B 742 MET LYS ASN LYS LYS ASP LYS GLY LEU LEU SER GLY LYS SEQRES 2 B 742 LEU THR PRO ALA GLN SER LYS ASN PRO ALA LYS ASN GLU SEQRES 3 B 742 LEU TYR LEU VAL GLU GLY ASP SER ALA GLY GLY SER ALA SEQRES 4 B 742 LYS GLN GLY ARG ASP ARG LYS PHE GLN ALA ILE LEU PRO SEQRES 5 B 742 LEU ARG GLY LYS VAL ILE ASN THR ALA LYS ALA LYS MET SEQRES 6 B 742 ALA ASP ILE LEU LYS ASN GLU GLU ILE ASN THR MET ILE SEQRES 7 B 742 TYR THR ILE GLY ALA GLY VAL GLY ALA ASP PHE SER ILE SEQRES 8 B 742 GLU ASP ALA ASN TYR ASP LYS ILE ILE ILE MET THR ASP SEQRES 9 B 742 ALA ASP THR ASP GLY ALA HIS ILE GLN THR LEU LEU LEU SEQRES 10 B 742 THR PHE PHE TYR ARG TYR MET ARG PRO LEU VAL GLU ALA SEQRES 11 B 742 GLY HIS VAL TYR ILE ALA LEU PRO PRO LEU TYR LYS MET SEQRES 12 B 742 SER LYS GLY LYS GLY LYS LYS GLU GLU VAL ALA TYR ALA SEQRES 13 B 742 TRP THR ASP GLY GLU LEU GLU GLU LEU ARG LYS GLN PHE SEQRES 14 B 742 GLY LYS GLY ALA THR LEU GLN ARG TYR LYS GLY LEU GLY SEQRES 15 B 742 GLU MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN SEQRES 16 B 742 PRO GLU THR ARG THR LEU ILE ARG VAL THR ILE GLU ASP SEQRES 17 B 742 LEU ALA ARG ALA GLU ARG ARG VAL ASN VAL LEU MET GLY SEQRES 18 B 742 ASP LYS VAL GLU PRO ARG ARG LYS TRP ILE GLU ASP ASN SEQRES 19 B 742 VAL LYS PHE THR LEU GLU GLU ALA THR VAL PHE HIS MET SEQRES 20 B 742 SER ASN ILE GLN ASN MET SER LEU GLU ASP ILE MET GLY SEQRES 21 B 742 GLU ARG PHE GLY ARG TYR SER LYS TYR ILE ILE GLN ASP SEQRES 22 B 742 ARG ALA LEU PRO ASP ILE ARG ASP GLY LEU LYS PRO VAL SEQRES 23 B 742 GLN ARG ARG ILE LEU TYR SER MET ASN LYS ASP SER ASN SEQRES 24 B 742 THR PHE ASP LYS SER TYR ARG LYS SER ALA LYS SER VAL SEQRES 25 B 742 GLY ASN ILE MET GLY ASN PHE HIS PRO HIS GLY ASP SER SEQRES 26 B 742 SER ILE TYR ASP ALA MET VAL ARG MET SER GLN ASN TRP SEQRES 27 B 742 LYS ASN ARG GLU ILE LEU VAL GLU MET HIS GLY ASN ASN SEQRES 28 B 742 GLY SER MET ASP GLY ASP PRO PRO ALA ALA MET ARG TYR SEQRES 29 B 742 THR GLU ALA ARG LEU SER GLU ILE ALA GLY TYR LEU LEU SEQRES 30 B 742 GLN ASP ILE GLU LYS LYS THR VAL PRO PHE ALA TRP ASN SEQRES 31 B 742 PHE ASP ASP THR GLU LYS GLU PRO THR VAL LEU PRO ALA SEQRES 32 B 742 ALA PHE PRO ASN LEU LEU VAL ASN GLY SER THR GLY ILE SEQRES 33 B 742 SER ALA GLY TYR ALA THR ASP ILE PRO PRO HIS ASN LEU SEQRES 34 B 742 ALA GLU VAL ILE ASP ALA ALA VAL TYR MET ILE ASP HIS SEQRES 35 B 742 PRO THR ALA LYS ILE ASP LYS LEU MET GLU PHE LEU PRO SEQRES 36 B 742 GLY PRO ASP PHE PRO THR GLY ALA ILE ILE GLN GLY ARG SEQRES 37 B 742 ASP GLU ILE LYS LYS ALA TYR GLU THR GLY LYS GLY ARG SEQRES 38 B 742 VAL VAL VAL ARG SER LYS THR GLU ILE GLU LYS LEU LYS SEQRES 39 B 742 GLY GLY LYS GLU GLN ILE VAL ILE THR GLU ILE PRO TYR SEQRES 40 B 742 GLU ILE ASN LYS ALA ASN LEU VAL LYS LYS ILE ASP ASP SEQRES 41 B 742 VAL ARG VAL ASN ASN LYS VAL ALA GLY ILE ALA GLU VAL SEQRES 42 B 742 ARG ASP GLU SER ASP ARG ASP GLY LEU ARG ILE ALA ILE SEQRES 43 B 742 GLU LEU LYS LYS ASP ALA ASN THR GLU LEU VAL LEU ASN SEQRES 44 B 742 TYR LEU PHE LYS TYR THR ASP LEU GLN ILE ASN TYR ASN SEQRES 45 B 742 PHE ASN MET VAL ALA ILE ASP ASN PHE THR PRO ARG GLN SEQRES 46 B 742 VAL GLY ILE VAL PRO ILE LEU SER SER TYR ILE ALA HIS SEQRES 47 B 742 ARG ARG GLU VAL ILE LEU ALA ARG SER ARG PHE ASP LYS SEQRES 48 B 742 GLU LYS ALA GLU LYS ARG LEU HIS ILE VAL GLU GLY LEU SEQRES 49 B 742 ILE ARG VAL ILE SER ILE LEU ASP GLU VAL ILE ALA LEU SEQRES 50 B 742 ILE ARG ALA SER GLU ASN LYS ALA ASP ALA LYS GLU ASN SEQRES 51 B 742 LEU LYS VAL SER TYR ASP PHE THR GLU GLU GLN ALA GLU SEQRES 52 B 742 ALA ILE VAL THR LEU GLN LEU TYR ARG LEU THR ASN THR SEQRES 53 B 742 ASP VAL VAL VAL LEU GLN GLU GLU GLU ALA GLU LEU ARG SEQRES 54 B 742 GLU LYS ILE ALA MET LEU ALA ALA ILE ILE GLY ASP GLU SEQRES 55 B 742 ARG THR MET TYR ASN LEU MET LYS LYS GLU LEU ARG GLU SEQRES 56 B 742 VAL LYS LYS LYS PHE ALA THR PRO ARG LEU SER SER LEU SEQRES 57 B 742 GLU ASP THR ALA LYS ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 58 B 742 HIS SEQRES 1 E 7 DC DA DT DG DA DA DT SEQRES 1 F 11 DA DG DT DC DA DT DT DC DA DT DG SEQRES 1 G 7 DC DG DT DG DC DA DT SEQRES 1 H 11 DG DA DC DT DA DT DG DC DA DC DG HET MPD A1501 22 HET MPD A1502 22 HET MG A1503 1 HET MG A1504 1 HET MG A1505 1 HET CL A1506 1 HET MPD B1501 22 HET MG B1502 1 HET MG B1503 1 HET MG B1504 1 HET CL B1505 1 HET TE9 F 101 41 HET TE9 H 101 41 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM TE9 DELAFLOXACIN HETSYN TE9 1-[6-AZANYL-3,5-BIS(FLUORANYL)PYRIDIN-2-YL]-8- HETSYN 2 TE9 CHLORANYL-6-FLUORANYL-7-(3-OXIDANYLAZETIDIN-1-YL)-4- HETSYN 3 TE9 OXIDANYLIDENE-QUINOLINE-3-CARBOXYLIC ACID FORMUL 7 MPD 3(C6 H14 O2) FORMUL 9 MG 6(MG 2+) FORMUL 12 CL 2(CL 1-) FORMUL 18 TE9 2(C18 H12 CL F3 N4 O4) FORMUL 20 HOH *418(H2 O) HELIX 1 AA1 GLY A 434 ARG A 445 1 12 HELIX 2 AA2 ASN A 473 GLY A 484 1 12 HELIX 3 AA3 SER A 492 ALA A 496 5 5 HELIX 4 AA4 ASP A 508 MET A 526 1 19 HELIX 5 AA5 MET A 526 ALA A 532 1 7 HELIX 6 AA6 ASP A 561 LYS A 569 1 9 HELIX 7 AA7 GLY A 582 MET A 586 5 5 HELIX 8 AA8 ASN A 587 MET A 596 1 10 HELIX 9 AA9 ASP A 610 GLY A 623 1 14 HELIX 10 AB1 LYS A 625 VAL A 637 1 13 HELIX 11 AB2 LEU A 1009 ASP A 1027 1 19 HELIX 12 AB3 LYS A 1038 ASP A 1051 1 14 HELIX 13 AB4 SER A 1062 PHE A 1073 1 12 HELIX 14 AB5 GLY A 1077 MET A 1088 1 12 HELIX 15 AB6 ILE A 1126 GLN A 1132 1 7 HELIX 16 AB7 ASP A 1133 LYS A 1137 5 5 HELIX 17 AB8 PRO A 1160 GLY A 1166 1 7 HELIX 18 AB9 ASN A 1182 HIS A 1196 1 15 HELIX 19 AC1 LYS A 1200 MET A 1205 1 6 HELIX 20 AC2 GLY A 1221 GLY A 1232 1 12 HELIX 21 AC3 ASN A 1264 ASN A 1278 1 15 HELIX 22 AC4 ASN A 1307 THR A 1319 1 13 HELIX 23 AC5 GLY A 1341 SER A 1383 1 43 HELIX 24 AC6 ILE A 1384 SER A 1395 1 12 HELIX 25 AC7 ASN A 1397 ASP A 1410 1 14 HELIX 26 AC8 THR A 1412 THR A 1421 1 10 HELIX 27 AC9 GLN A 1423 ASN A 1429 5 7 HELIX 28 AD1 ASP A 1431 ASP A 1455 1 25 HELIX 29 AD2 ASP A 1455 ALA A 1475 1 21 HELIX 30 AD3 GLY B 434 ARG B 445 1 12 HELIX 31 AD4 MET B 467 ASN B 473 1 7 HELIX 32 AD5 ASN B 473 GLY B 484 1 12 HELIX 33 AD6 VAL B 487 PHE B 491 5 5 HELIX 34 AD7 ASP B 508 MET B 526 1 19 HELIX 35 AD8 MET B 526 ALA B 532 1 7 HELIX 36 AD9 THR B 560 LYS B 569 1 10 HELIX 37 AE1 ASN B 587 MET B 596 1 10 HELIX 38 AE2 ASP B 610 GLY B 623 1 14 HELIX 39 AE3 LYS B 625 VAL B 637 1 13 HELIX 40 AE4 LEU B 1009 ASP B 1027 1 19 HELIX 41 AE5 LYS B 1038 ASP B 1051 1 14 HELIX 42 AE6 SER B 1062 PHE B 1073 1 12 HELIX 43 AE7 GLY B 1077 MET B 1088 1 12 HELIX 44 AE8 ALA B 1127 GLN B 1132 1 6 HELIX 45 AE9 ASP B 1133 LYS B 1137 5 5 HELIX 46 AF1 PRO B 1160 GLY B 1166 1 7 HELIX 47 AF2 ASN B 1182 HIS B 1196 1 15 HELIX 48 AF3 LYS B 1200 MET B 1205 1 6 HELIX 49 AF4 GLY B 1221 GLY B 1232 1 12 HELIX 50 AF5 ASN B 1264 ASN B 1279 1 16 HELIX 51 AF6 ASN B 1307 THR B 1319 1 13 HELIX 52 AF7 GLY B 1341 ILE B 1384 1 44 HELIX 53 AF8 ILE B 1384 SER B 1395 1 12 HELIX 54 AF9 ASN B 1397 ASP B 1410 1 14 HELIX 55 AG1 THR B 1412 THR B 1421 1 10 HELIX 56 AG2 GLN B 1423 ASN B 1429 5 7 HELIX 57 AG3 ASP B 1431 ASP B 1455 1 25 HELIX 58 AG4 ASP B 1455 ALA B 1475 1 21 SHEET 1 AA1 6 GLN A 450 LEU A 455 0 SHEET 2 AA1 6 GLU A 428 GLU A 433 1 N VAL A 432 O LEU A 455 SHEET 3 AA1 6 LYS A 500 MET A 504 1 O MET A 504 N LEU A 431 SHEET 4 AA1 6 VAL A 535 ILE A 537 1 O TYR A 536 N ILE A 501 SHEET 5 AA1 6 ILE A 604 THR A 607 -1 O VAL A 606 N VAL A 535 SHEET 6 AA1 6 ASN A1006 SER A1008 1 O MET A1007 N THR A 607 SHEET 1 AA2 3 ALA A 556 ALA A 558 0 SHEET 2 AA2 3 TYR A 543 MET A 545 -1 N MET A 545 O ALA A 556 SHEET 3 AA2 3 LEU A 577 ARG A 579 -1 O GLN A 578 N LYS A 544 SHEET 1 AA3 3 ARG A1060 LYS A1061 0 SHEET 2 AA3 3 GLU A1120 LEU A1123 -1 O ALA A1121 N ARG A1060 SHEET 3 AA3 3 VAL A1099 HIS A1102 -1 N GLU A1100 O ARG A1122 SHEET 1 AA4 2 PHE A1141 TRP A1143 0 SHEET 2 AA4 2 LYS A1150 PRO A1152 -1 O GLU A1151 N ALA A1142 SHEET 1 AA5 2 SER A1167 ILE A1170 0 SHEET 2 AA5 2 ALA A1175 ILE A1178 -1 O ILE A1178 N SER A1167 SHEET 1 AA6 4 GLN A1322 ASN A1328 0 SHEET 2 AA6 4 LYS A1233 ARG A1239 -1 N VAL A1238 O ILE A1323 SHEET 3 AA6 4 ILE A1218 GLN A1220 -1 N GLN A1220 O VAL A1237 SHEET 4 AA6 4 SER A1481 GLU A1483 1 O SER A1481 N ILE A1219 SHEET 1 AA7 4 LYS A1241 LYS A1246 0 SHEET 2 AA7 4 GLU A1252 GLU A1258 -1 O GLN A1253 N GLU A1245 SHEET 3 AA7 4 ILE A1298 LEU A1302 -1 O ILE A1300 N ILE A1254 SHEET 4 AA7 4 ILE A1284 ASP A1289 -1 N ARG A1288 O ALA A1299 SHEET 1 AA8 2 VAL A1330 ASP A1333 0 SHEET 2 AA8 2 THR A1336 GLN A1339 -1 O THR A1336 N ASP A1333 SHEET 1 AA9 6 GLN B 450 LEU B 455 0 SHEET 2 AA9 6 GLU B 428 GLU B 433 1 N TYR B 430 O LEU B 453 SHEET 3 AA9 6 LYS B 500 MET B 504 1 O ILE B 502 N LEU B 431 SHEET 4 AA9 6 VAL B 535 ALA B 538 1 O TYR B 536 N ILE B 501 SHEET 5 AA9 6 LEU B 603 THR B 607 -1 O VAL B 606 N VAL B 535 SHEET 6 AA9 6 ILE B1004 SER B1008 1 O GLN B1005 N ARG B 605 SHEET 1 AB1 3 VAL B 555 ALA B 558 0 SHEET 2 AB1 3 TYR B 543 SER B 546 -1 N MET B 545 O ALA B 556 SHEET 3 AB1 3 THR B 576 ARG B 579 -1 O THR B 576 N SER B 546 SHEET 1 AB2 3 ARG B1060 LYS B1061 0 SHEET 2 AB2 3 GLU B1120 LEU B1123 -1 O ALA B1121 N ARG B1060 SHEET 3 AB2 3 VAL B1099 HIS B1102 -1 N GLU B1100 O ARG B1122 SHEET 1 AB3 2 PHE B1141 TRP B1143 0 SHEET 2 AB3 2 LYS B1150 PRO B1152 -1 O GLU B1151 N ALA B1142 SHEET 1 AB4 2 SER B1167 ILE B1170 0 SHEET 2 AB4 2 ALA B1175 ILE B1178 -1 O ILE B1178 N SER B1167 SHEET 1 AB5 4 GLN B1322 ASN B1328 0 SHEET 2 AB5 4 LYS B1233 ARG B1239 -1 N VAL B1238 O ILE B1323 SHEET 3 AB5 4 ILE B1218 GLN B1220 -1 N GLN B1220 O VAL B1237 SHEET 4 AB5 4 SER B1481 GLU B1483 1 O SER B1481 N ILE B1219 SHEET 1 AB6 4 LYS B1241 LYS B1246 0 SHEET 2 AB6 4 GLU B1252 GLU B1258 -1 O VAL B1255 N GLU B1243 SHEET 3 AB6 4 ILE B1298 LEU B1302 -1 O ILE B1300 N ILE B1254 SHEET 4 AB6 4 ILE B1284 ASP B1289 -1 N ARG B1288 O ALA B1299 SHEET 1 AB7 2 VAL B1330 ASP B1333 0 SHEET 2 AB7 2 THR B1336 GLN B1339 -1 O THR B1336 N ASP B1333 LINK OD2 ASP A 506 MG MG A1505 1555 1555 2.52 LINK OD2 ASP A 508 MG MG A1505 1555 1555 2.96 LINK O PHE A1316 MG MG A1504 1555 1555 2.65 LINK O LYS A1317 MG MG A1504 1555 1555 2.94 LINK O THR A1319 MG MG A1504 1555 1555 2.54 LINK O GLN A1322 MG MG A1504 1555 1555 2.57 LINK MG MG A1503 O HOH A1739 1555 1555 2.61 LINK MG MG A1503 O HOH E 101 1555 1555 2.35 LINK MG MG A1503 O1 TE9 F 101 1555 1555 2.54 LINK MG MG A1503 O3 TE9 F 101 1555 1555 2.47 LINK MG MG A1503 O HOH F 202 1555 1555 2.17 LINK MG MG A1504 O HOH A1684 1555 1555 2.12 LINK MG MG A1504 O HOH A1777 1555 1555 2.43 LINK MG MG A1505 O HOH A1601 1555 1555 2.31 LINK MG MG A1505 O HOH A1612 1555 1555 2.37 LINK MG MG A1505 O HOH A1645 1555 1555 2.37 LINK OD2 ASP B 506 MG MG B1504 1555 1555 2.53 LINK OD2 ASP B 508 MG MG B1504 1555 1555 2.99 LINK O PHE B1316 MG MG B1503 1555 1555 2.72 LINK O LYS B1317 MG MG B1503 1555 1555 2.84 LINK O THR B1319 MG MG B1503 1555 1555 2.43 LINK O GLN B1322 MG MG B1503 1555 1555 2.50 LINK MG MG B1502 O HOH B1602 1555 1555 2.39 LINK MG MG B1502 O HOH G 101 1555 1555 2.34 LINK MG MG B1502 O2 TE9 H 101 1555 1555 2.55 LINK MG MG B1502 O3 TE9 H 101 1555 1555 2.78 LINK MG MG B1502 O HOH H 202 1555 1555 2.05 LINK MG MG B1503 O HOH B1754 1555 1555 2.55 LINK MG MG B1503 O HOH B1776 1555 1555 2.72 LINK MG MG B1504 O HOH B1601 1555 1555 2.21 LINK MG MG B1504 O HOH B1606 1555 1555 2.54 LINK MG MG B1504 O HOH B1621 1555 1555 2.16 CRYST1 157.471 157.471 212.339 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006350 0.003666 0.000000 0.00000 SCALE2 0.000000 0.007333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004709 0.00000