HEADER ANTIMICROBIAL PROTEIN 03-JAN-23 8C4D TITLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE FROM ENTEROCOCCUS FAECIUM PROPHAGE TITLE 2 GENOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLMURAMOYL-L-ALANINE AMIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE CRYSTALS CONTAINED ONLY THE AMIDASE DOMAIN. THE COMPND 6 REST OF THE EXPRESSED PROTEIN WAS PROBABLY REMOVED BY PROTEOLYSIS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM; SOURCE 3 ORGANISM_TAXID: 1352; SOURCE 4 GENE: HV425_06660; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENTEROCOCCUS FAECIUM, ANTIBACTERIAL, ENZYME ENGINEERING, ENZYBIOTICS, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.C.PAPAGEORGIOU,G.E.PREMETIS,N.E.LABROU REVDAT 1 13-DEC-23 8C4D 0 JRNL AUTH G.E.PREMETIS,A.STATHI,A.C.PAPAGEORGIOU,N.E.LABROU JRNL TITL STRUCTURAL AND FUNCTIONAL FEATURES OF A BROAD-SPECTRUM JRNL TITL 2 PROPHAGE-ENCODED ENZYBIOTIC FROM ENTEROCOCCUS FAECIUM. JRNL REF SCI REP V. 13 7450 2023 JRNL REFN ESSN 2045-2322 JRNL PMID 37156923 JRNL DOI 10.1038/S41598-023-34309-2 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7300 - 4.7400 1.00 2010 155 0.1892 0.1717 REMARK 3 2 4.7300 - 3.7600 0.99 1882 146 0.1287 0.1638 REMARK 3 3 3.7600 - 3.2800 1.00 1856 144 0.1381 0.1633 REMARK 3 4 3.2800 - 2.9800 1.00 1841 144 0.1639 0.1837 REMARK 3 5 2.9800 - 2.7700 1.00 1825 141 0.1631 0.1800 REMARK 3 6 2.7700 - 2.6100 1.00 1828 141 0.1685 0.2008 REMARK 3 7 2.6100 - 2.4800 1.00 1818 142 0.1746 0.2168 REMARK 3 8 2.4800 - 2.3700 1.00 1814 143 0.1844 0.2134 REMARK 3 9 2.3700 - 2.2800 1.00 1796 138 0.1950 0.2257 REMARK 3 10 2.2800 - 2.2000 1.00 1798 140 0.2127 0.2311 REMARK 3 11 2.2000 - 2.1300 1.00 1807 142 0.2248 0.2782 REMARK 3 12 2.1300 - 2.0700 1.00 1786 138 0.2369 0.2733 REMARK 3 13 2.0700 - 2.0100 1.00 1799 140 0.2707 0.3503 REMARK 3 14 2.0100 - 1.9700 0.97 1720 134 0.2995 0.3037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1529 REMARK 3 ANGLE : 0.878 2079 REMARK 3 CHIRALITY : 0.057 219 REMARK 3 PLANARITY : 0.010 278 REMARK 3 DIHEDRAL : 22.428 214 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 49.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 25.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SMALL (<0.15 MM) ROD-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3000, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.63600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.95400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.31800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.63600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.31800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.95400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 571 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 186 REMARK 465 SER A 187 REMARK 465 THR A 188 REMARK 465 GLU A 189 REMARK 465 ASP A 190 REMARK 465 GLN A 191 REMARK 465 ASN A 192 REMARK 465 HIS A 193 REMARK 465 ASP A 194 REMARK 465 ASP A 195 REMARK 465 LYS A 196 REMARK 465 VAL A 197 REMARK 465 SER A 198 REMARK 465 ALA A 199 REMARK 465 SER A 200 REMARK 465 THR A 201 REMARK 465 PRO A 202 REMARK 465 THR A 203 REMARK 465 HIS A 204 REMARK 465 GLN A 205 REMARK 465 GLY A 206 REMARK 465 ASN A 207 REMARK 465 ALA A 208 REMARK 465 TYR A 209 REMARK 465 GLY A 210 REMARK 465 LYS A 211 REMARK 465 LEU A 212 REMARK 465 ASP A 213 REMARK 465 ILE A 214 REMARK 465 PHE A 215 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 VAL A 218 REMARK 465 THR A 219 REMARK 465 ASP A 220 REMARK 465 LYS A 221 REMARK 465 THR A 222 REMARK 465 VAL A 223 REMARK 465 ARG A 224 REMARK 465 VAL A 225 REMARK 465 ALA A 226 REMARK 465 GLY A 227 REMARK 465 TRP A 228 REMARK 465 LEU A 229 REMARK 465 VAL A 230 REMARK 465 PRO A 231 REMARK 465 ASP A 232 REMARK 465 LYS A 233 REMARK 465 PRO A 234 REMARK 465 GLN A 235 REMARK 465 GLY A 236 REMARK 465 ALA A 237 REMARK 465 ILE A 238 REMARK 465 GLY A 239 REMARK 465 THR A 240 REMARK 465 TYR A 241 REMARK 465 ALA A 242 REMARK 465 TYR A 243 REMARK 465 VAL A 244 REMARK 465 LEU A 245 REMARK 465 VAL A 246 REMARK 465 MET A 247 REMARK 465 GLU A 248 REMARK 465 HIS A 249 REMARK 465 GLY A 250 REMARK 465 THR A 251 REMARK 465 PRO A 252 REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 LEU A 255 REMARK 465 THR A 256 REMARK 465 ARG A 257 REMARK 465 ILE A 258 REMARK 465 GLN A 259 REMARK 465 SER A 260 REMARK 465 GLN A 261 REMARK 465 GLY A 262 REMARK 465 ILE A 263 REMARK 465 ALA A 264 REMARK 465 ARG A 265 REMARK 465 PRO A 266 REMARK 465 ASP A 267 REMARK 465 VAL A 268 REMARK 465 LYS A 269 REMARK 465 LYS A 270 REMARK 465 ALA A 271 REMARK 465 TYR A 272 REMARK 465 GLY A 273 REMARK 465 TYR A 274 REMARK 465 GLN A 275 REMARK 465 GLY A 276 REMARK 465 GLY A 277 REMARK 465 ASP A 278 REMARK 465 ALA A 279 REMARK 465 LEU A 280 REMARK 465 GLY A 281 REMARK 465 PHE A 282 REMARK 465 ASP A 283 REMARK 465 VAL A 284 REMARK 465 THR A 285 REMARK 465 PHE A 286 REMARK 465 ASP A 287 REMARK 465 SER A 288 REMARK 465 SER A 289 REMARK 465 TRP A 290 REMARK 465 MET A 291 REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 LYS A 294 REMARK 465 LYS A 295 REMARK 465 ILE A 296 REMARK 465 ASP A 297 REMARK 465 ILE A 298 REMARK 465 ILE A 299 REMARK 465 LEU A 300 REMARK 465 ARG A 301 REMARK 465 ARG A 302 REMARK 465 CYS A 303 REMARK 465 ASN A 304 REMARK 465 GLN A 305 REMARK 465 SER A 306 REMARK 465 ASN A 307 REMARK 465 GLY A 308 REMARK 465 GLU A 309 REMARK 465 GLY A 310 REMARK 465 SER A 311 REMARK 465 VAL A 312 REMARK 465 ASN A 313 REMARK 465 ASP A 314 REMARK 465 VAL A 315 REMARK 465 ARG A 316 REMARK 465 ILE A 317 REMARK 465 SER A 318 REMARK 465 ASP A 319 REMARK 465 ILE A 320 REMARK 465 TYR A 321 REMARK 465 LEU A 322 REMARK 465 ILE A 323 REMARK 465 LEU A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 622 O HOH A 671 1.68 REMARK 500 O HOH A 626 O HOH A 647 1.88 REMARK 500 NH1 ARG A 73 O HOH A 501 1.97 REMARK 500 O HOH A 635 O HOH A 645 2.00 REMARK 500 O HOH A 642 O HOH A 679 2.02 REMARK 500 O HOH A 587 O HOH A 650 2.06 REMARK 500 O HOH A 643 O HOH A 672 2.11 REMARK 500 O HOH A 556 O HOH A 646 2.11 REMARK 500 O HOH A 643 O HOH A 662 2.13 REMARK 500 O HOH A 629 O HOH A 655 2.15 REMARK 500 O HOH A 532 O HOH A 674 2.16 REMARK 500 O HOH A 638 O HOH A 647 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 649 O HOH A 659 7556 1.88 REMARK 500 O HOH A 674 O HOH A 676 3654 2.02 REMARK 500 O HOH A 556 O HOH A 559 7556 2.04 REMARK 500 O HOH A 539 O HOH A 649 7556 2.06 REMARK 500 O HOH A 520 O HOH A 559 7556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 -165.75 -123.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 690 DISTANCE = 6.46 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 ND1 REMARK 620 2 HIS A 132 ND1 98.9 REMARK 620 3 CYS A 140 SG 113.9 120.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 53 O REMARK 620 2 HOH A 534 O 113.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 58 OH REMARK 620 2 HOH A 581 O 81.4 REMARK 620 N 1 DBREF 8C4D A 1 330 PDB 8C4D 8C4D 1 330 SEQRES 1 A 330 MET VAL ASN ILE ILE ASN ASN SER VAL CYS ARG GLY VAL SEQRES 2 A 330 ALA GLY ARG ARG VAL GLY ASP VAL LYS GLY VAL VAL ILE SEQRES 3 A 330 HIS ASN THR TRP THR ASN THR THR ALA GLU GLN GLU MET SEQRES 4 A 330 ASN ARG LEU ALA GLY MET THR ASP LYS GLN LEU GLU ALA SEQRES 5 A 330 GLY PHE ALA HIS TYR TYR CYS ASP GLU ASN THR ILE ILE SEQRES 6 A 330 ARG THR GLU ASP THR TYR ASN ARG ALA TRP HIS VAL ALA SEQRES 7 A 330 ASN SER ASP GLY ASN ASN SER TYR ILE GLY TYR GLU VAL SEQRES 8 A 330 ARG GLY ASN ARG GLU THR PRO LYS ALA VAL PHE LEU GLN SEQRES 9 A 330 ALA GLU GLN ASN ALA PHE TRP GLN ALA ALA GLU ASP LEU SEQRES 10 A 330 ARG PHE TYR GLY LEU PRO VAL ASN ARG ASN THR VAL LYS SEQRES 11 A 330 CYS HIS HIS GLN PHE SER ALA THR GLU CYS PRO LYS ARG SEQRES 12 A 330 SER LEU MET GLU HIS CYS GLY TYR ASP SER THR LEU ALA SEQRES 13 A 330 VAL PRO ALA ALA ILE THR VAL GLN MET GLN ASP TYR PHE SEQRES 14 A 330 ILE SER GLN ILE LYS LYS TYR TYR ASP ASN PRO ALA LEU SEQRES 15 A 330 LYS PRO ASP GLY SER THR GLU ASP GLN ASN HIS ASP ASP SEQRES 16 A 330 LYS VAL SER ALA SER THR PRO THR HIS GLN GLY ASN ALA SEQRES 17 A 330 TYR GLY LYS LEU ASP ILE PHE LYS GLU VAL THR ASP LYS SEQRES 18 A 330 THR VAL ARG VAL ALA GLY TRP LEU VAL PRO ASP LYS PRO SEQRES 19 A 330 GLN GLY ALA ILE GLY THR TYR ALA TYR VAL LEU VAL MET SEQRES 20 A 330 GLU HIS GLY THR PRO LYS GLU LEU THR ARG ILE GLN SER SEQRES 21 A 330 GLN GLY ILE ALA ARG PRO ASP VAL LYS LYS ALA TYR GLY SEQRES 22 A 330 TYR GLN GLY GLY ASP ALA LEU GLY PHE ASP VAL THR PHE SEQRES 23 A 330 ASP SER SER TRP MET LYS GLY LYS LYS ILE ASP ILE ILE SEQRES 24 A 330 LEU ARG ARG CYS ASN GLN SER ASN GLY GLU GLY SER VAL SEQRES 25 A 330 ASN ASP VAL ARG ILE SER ASP ILE TYR LEU ILE LEU HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS HET FLC A 401 13 HET ZN A 402 1 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET NA A 407 1 HET NA A 408 1 HET NA A 409 1 HETNAM FLC CITRATE ANION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 FLC C6 H5 O7 3- FORMUL 3 ZN ZN 2+ FORMUL 4 CL 4(CL 1-) FORMUL 8 NA 3(NA 1+) FORMUL 11 HOH *190(H2 O) HELIX 1 AA1 THR A 34 GLY A 44 1 11 HELIX 2 AA2 LYS A 48 GLY A 53 5 6 HELIX 3 AA3 ASN A 79 SER A 85 1 7 HELIX 4 AA4 PRO A 98 GLY A 121 1 24 HELIX 5 AA5 CYS A 131 PHE A 135 5 5 HELIX 6 AA6 PRO A 141 GLY A 150 1 10 HELIX 7 AA7 PRO A 158 ASP A 178 1 21 SHEET 1 AA1 6 ASN A 3 ASN A 6 0 SHEET 2 AA1 6 THR A 63 ARG A 66 1 O ARG A 66 N ILE A 5 SHEET 3 AA1 6 TYR A 57 CYS A 59 -1 N TYR A 58 O ILE A 65 SHEET 4 AA1 6 TYR A 86 VAL A 91 1 O GLU A 90 N CYS A 59 SHEET 5 AA1 6 GLY A 23 ASN A 28 1 N HIS A 27 O TYR A 89 SHEET 6 AA1 6 VAL A 129 LYS A 130 1 O LYS A 130 N VAL A 24 LINK ND1 HIS A 27 ZN ZN A 402 1555 1555 2.23 LINK O GLY A 53 NA NA A 407 1555 1555 2.77 LINK OH TYR A 58 NA NA A 408 1555 1555 3.13 LINK ND1 HIS A 132 ZN ZN A 402 1555 1555 2.24 LINK SG CYS A 140 ZN ZN A 402 1555 1555 2.30 LINK NA NA A 407 O HOH A 534 1555 1555 2.99 LINK NA NA A 408 O HOH A 581 1555 1555 3.06 CISPEP 1 CYS A 140 PRO A 141 0 -1.01 CRYST1 74.713 74.713 133.272 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013385 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013385 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007503 0.00000