HEADER METAL BINDING PROTEIN 04-JAN-23 8C4L TITLE FERRIC-SIDEROPHORE REDUCTION IN SHEWANELLA BISCESTRII: STRUCTURAL AND TITLE 2 FUNCTIONAL CHARACTERIZATION OF SBISIP REVEALS UNFORESEEN SPECIFICITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIBRIOBACTIN UTILIZATION PROTEIN VIUB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA BICESTRII; SOURCE 3 ORGANISM_TAXID: 2018305; SOURCE 4 GENE: VIUB, NCTC12093_01939; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SIDEROPHORE BINDING PROTEIN, IRON REDUCTION, METAL TRANSPORT, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.B.TRINDADE,P.MATIAS,E.MOE,R.O.LOURO REVDAT 1 17-JAN-24 8C4L 0 JRNL AUTH I.B.TRINDADE,B.M.FONSECA,T.CATARINO,P.MATIAS,E.MOE,R.O.LOURO JRNL TITL FERRIC-SIDEROPHORE REDUCTION IN SHEWANELLA BICESTRII: JRNL TITL 2 STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF SBSIP REVEALS JRNL TITL 3 AN OVERLOOKED SPECIFICITY OF SIDEROPHORE INTERACTING JRNL TITL 4 PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 66.9 REMARK 3 NUMBER OF REFLECTIONS : 49062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.7100 - 4.7900 1.00 4487 199 0.1790 0.1976 REMARK 3 2 4.7900 - 3.8000 1.00 4222 219 0.1253 0.1515 REMARK 3 3 3.8000 - 3.3200 1.00 4121 242 0.1404 0.1709 REMARK 3 4 3.3200 - 3.0200 0.99 4102 238 0.1735 0.2172 REMARK 3 5 3.0200 - 2.8000 1.00 4099 210 0.1845 0.2238 REMARK 3 6 2.8000 - 2.6400 0.99 4066 208 0.1884 0.2362 REMARK 3 7 2.6400 - 2.5000 0.99 4050 219 0.1912 0.2335 REMARK 3 8 2.5000 - 2.4000 0.97 3978 186 0.1989 0.2367 REMARK 3 9 2.4000 - 2.3000 0.83 3404 156 0.2031 0.2340 REMARK 3 10 2.3000 - 2.2200 0.64 2571 131 0.2034 0.2225 REMARK 3 11 2.2200 - 2.1500 0.51 2077 107 0.1864 0.2286 REMARK 3 12 2.1500 - 2.0900 0.41 1658 90 0.2051 0.2328 REMARK 3 13 2.0900 - 2.0400 0.33 1329 64 0.2033 0.2493 REMARK 3 14 2.0400 - 1.9900 0.27 1086 61 0.1955 0.2703 REMARK 3 15 1.9900 - 1.9400 0.20 777 50 0.2336 0.2397 REMARK 3 16 1.9400 - 1.9000 0.12 468 24 0.2281 0.2236 REMARK 3 17 1.9000 - 1.8600 0.04 155 8 0.2528 0.4925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.171 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.883 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4031 REMARK 3 ANGLE : 1.145 5497 REMARK 3 CHIRALITY : 0.063 602 REMARK 3 PLANARITY : 0.012 699 REMARK 3 DIHEDRAL : 14.636 1477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7356 1.9402 14.1310 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.1498 REMARK 3 T33: 0.2099 T12: -0.0007 REMARK 3 T13: -0.0048 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.7821 L22: 2.8308 REMARK 3 L33: 3.7643 L12: -0.8178 REMARK 3 L13: -0.0723 L23: -0.3729 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: -0.1746 S13: -0.1067 REMARK 3 S21: 0.4840 S22: 0.1479 S23: 0.1307 REMARK 3 S31: 0.1325 S32: -0.1585 S33: -0.0599 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4393 -3.6420 14.8473 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.2896 REMARK 3 T33: 0.2786 T12: -0.1310 REMARK 3 T13: 0.0754 T23: 0.1353 REMARK 3 L TENSOR REMARK 3 L11: 1.0880 L22: 4.0077 REMARK 3 L33: 5.2735 L12: 0.8036 REMARK 3 L13: 0.2661 L23: -0.0819 REMARK 3 S TENSOR REMARK 3 S11: 0.3443 S12: -0.2160 S13: -0.4119 REMARK 3 S21: 0.2602 S22: -0.0832 S23: 0.5714 REMARK 3 S31: 0.1585 S32: -1.0502 S33: -0.2801 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9488 3.2679 13.0020 REMARK 3 T TENSOR REMARK 3 T11: 0.2714 T22: 0.1356 REMARK 3 T33: 0.1868 T12: 0.0030 REMARK 3 T13: 0.0282 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 3.0228 L22: 2.0096 REMARK 3 L33: 3.5690 L12: -0.5306 REMARK 3 L13: -0.1007 L23: 0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: -0.1282 S13: 0.0413 REMARK 3 S21: 0.3992 S22: 0.0864 S23: 0.1640 REMARK 3 S31: -0.1095 S32: -0.2090 S33: -0.0388 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6701 -11.2261 -4.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.6186 T22: 0.1613 REMARK 3 T33: 0.3783 T12: -0.1916 REMARK 3 T13: 0.0414 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 0.9647 L22: 0.9540 REMARK 3 L33: 5.5792 L12: -0.4488 REMARK 3 L13: -0.2867 L23: 2.1335 REMARK 3 S TENSOR REMARK 3 S11: -0.1280 S12: 0.0286 S13: -0.5568 REMARK 3 S21: -0.3190 S22: -0.0507 S23: 0.1939 REMARK 3 S31: 0.7914 S32: -0.5852 S33: 0.3563 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0661 3.0458 -9.7546 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1521 REMARK 3 T33: 0.1587 T12: -0.0083 REMARK 3 T13: -0.0171 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.4520 L22: 2.5358 REMARK 3 L33: 5.2303 L12: 0.3421 REMARK 3 L13: -0.5363 L23: 0.1398 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.2971 S13: 0.0359 REMARK 3 S21: -0.0735 S22: 0.0499 S23: 0.0377 REMARK 3 S31: 0.1175 S32: -0.1423 S33: -0.0108 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1972 0.9599 -10.3255 REMARK 3 T TENSOR REMARK 3 T11: -0.1611 T22: 0.5655 REMARK 3 T33: 0.1873 T12: -0.2183 REMARK 3 T13: -0.1762 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.3039 L22: 1.4672 REMARK 3 L33: 4.2532 L12: 0.4833 REMARK 3 L13: -0.1445 L23: -0.2427 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: 0.7753 S13: -0.1004 REMARK 3 S21: -0.4895 S22: 0.3756 S23: 1.0642 REMARK 3 S31: 0.0959 S32: -2.3946 S33: 0.9105 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3800 1.9230 -2.1811 REMARK 3 T TENSOR REMARK 3 T11: 0.2599 T22: 1.0022 REMARK 3 T33: 0.5682 T12: -0.0814 REMARK 3 T13: 0.0828 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.7153 L22: 1.9229 REMARK 3 L33: 7.2960 L12: -0.8775 REMARK 3 L13: 0.4834 L23: 1.8174 REMARK 3 S TENSOR REMARK 3 S11: -0.1362 S12: 0.9373 S13: -0.6766 REMARK 3 S21: -0.1441 S22: 0.3005 S23: 0.4431 REMARK 3 S31: 0.7488 S32: -1.1139 S33: 0.1578 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.0465 -1.2501 43.3594 REMARK 3 T TENSOR REMARK 3 T11: 0.1965 T22: 0.2335 REMARK 3 T33: 0.2512 T12: 0.0476 REMARK 3 T13: -0.0008 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.6425 L22: 2.1025 REMARK 3 L33: 3.9978 L12: 0.1163 REMARK 3 L13: 0.5636 L23: 0.3919 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: -0.0938 S13: 0.1115 REMARK 3 S21: 0.1450 S22: 0.0911 S23: -0.3141 REMARK 3 S31: 0.0771 S32: 0.5644 S33: -0.1506 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1311 -16.5735 43.4779 REMARK 3 T TENSOR REMARK 3 T11: 0.3546 T22: 0.3125 REMARK 3 T33: 0.4198 T12: 0.1757 REMARK 3 T13: 0.0255 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.2259 L22: 6.9290 REMARK 3 L33: 2.0817 L12: -1.1901 REMARK 3 L13: 1.3897 L23: -0.6845 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.1366 S13: -0.2045 REMARK 3 S21: 0.6939 S22: -0.3585 S23: 0.1019 REMARK 3 S31: 0.4332 S32: 0.0308 S33: 0.1912 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1815 -2.1028 33.0374 REMARK 3 T TENSOR REMARK 3 T11: 0.2023 T22: 0.1698 REMARK 3 T33: 0.2172 T12: 0.0237 REMARK 3 T13: 0.0126 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.0055 L22: 1.2436 REMARK 3 L33: 3.3798 L12: 0.1037 REMARK 3 L13: 0.4914 L23: 0.7504 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: 0.1624 S13: -0.0032 REMARK 3 S21: -0.0973 S22: 0.1337 S23: -0.1746 REMARK 3 S31: 0.0374 S32: 0.6762 S33: 0.0208 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.7950 -3.8878 17.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.3044 REMARK 3 T33: 0.1713 T12: 0.0133 REMARK 3 T13: 0.0276 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 3.0372 L22: 1.9673 REMARK 3 L33: 4.1284 L12: -0.1068 REMARK 3 L13: 0.1634 L23: -0.2890 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: 0.6749 S13: -0.1916 REMARK 3 S21: -0.4425 S22: 0.1131 S23: -0.1474 REMARK 3 S31: 0.1688 S32: 0.4650 S33: 0.0533 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.4596 -8.4043 20.8911 REMARK 3 T TENSOR REMARK 3 T11: 0.3601 T22: 0.5751 REMARK 3 T33: 0.3593 T12: 0.1470 REMARK 3 T13: 0.1073 T23: -0.1851 REMARK 3 L TENSOR REMARK 3 L11: 2.5768 L22: 3.7046 REMARK 3 L33: 3.2273 L12: -0.1888 REMARK 3 L13: 1.1911 L23: -0.1756 REMARK 3 S TENSOR REMARK 3 S11: -0.1311 S12: 0.9829 S13: -0.3767 REMARK 3 S21: -0.2940 S22: 0.0396 S23: -0.9738 REMARK 3 S31: 0.5715 S32: 1.4955 S33: 0.5240 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.9018 -16.4287 22.5759 REMARK 3 T TENSOR REMARK 3 T11: 0.6340 T22: 0.8613 REMARK 3 T33: 0.7475 T12: 0.3398 REMARK 3 T13: 0.0884 T23: -0.1925 REMARK 3 L TENSOR REMARK 3 L11: 1.0025 L22: 3.3081 REMARK 3 L33: 8.3999 L12: 0.4029 REMARK 3 L13: 2.3063 L23: -2.1312 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: 0.6532 S13: -0.6519 REMARK 3 S21: 0.0301 S22: 0.2262 S23: -0.7471 REMARK 3 S31: 0.3606 S32: 1.6807 S33: -0.0594 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 6 through 246 or REMARK 3 resid 500)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 6 through 246 or REMARK 3 resid 500)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 62.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 15.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE WITH 0.01 M REMARK 280 COBALT(II) CHLORIDE HEXAHYDRATE AND 0.1 M MES PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.42600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.22050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.22050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 188.13900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.22050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.22050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.71300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.22050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.22050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 188.13900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.22050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.22050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.71300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.42600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 770 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 777 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 ASN A 247 REMARK 465 ASN A 248 REMARK 465 THR A 249 REMARK 465 VAL A 250 REMARK 465 GLY A 251 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 THR B 249 REMARK 465 VAL B 250 REMARK 465 GLY B 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 227 O HOH A 601 1.45 REMARK 500 NZ LYS B 210 OE2 GLU B 246 2.13 REMARK 500 O HOH A 737 O HOH A 755 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 766 O HOH B 718 3544 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 -7.86 82.45 REMARK 500 ASP A 52 -9.99 -56.57 REMARK 500 THR A 79 78.29 65.89 REMARK 500 ASP A 119 -166.10 -101.76 REMARK 500 CYS A 197 -166.95 -170.39 REMARK 500 SER B 40 -9.21 81.71 REMARK 500 THR B 79 76.11 67.66 REMARK 500 ASP B 119 -163.91 -104.55 REMARK 500 CYS B 197 -164.52 -170.19 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8C4L A 1 251 UNP A0A448CKI9_SHEPU DBREF2 8C4L A A0A448CKI9 1 251 DBREF1 8C4L B 1 251 UNP A0A448CKI9_SHEPU DBREF2 8C4L B A0A448CKI9 1 251 SEQRES 1 A 251 MET ASN ARG PRO ALA PRO ARG GLU LEU THR VAL ILE GLY SEQRES 2 A 251 LYS THR GLN VAL THR PRO HIS MET LEU ARG ILE THR LEU SEQRES 3 A 251 GLY GLY ALA GLY PHE ALA GLY PHE PRO ALA ASP GLN GLU SEQRES 4 A 251 SER ALA TYR ILE LYS LEU LEU PHE PRO GLN GLN GLY ASP SEQRES 5 A 251 GLU ARG PRO LEU MET ARG THR TYR THR ILE ARG GLN GLN SEQRES 6 A 251 ARG MET ASN GLU ILE ASP VAL ASP PHE VAL LEU HIS ASP SEQRES 7 A 251 THR ASP GLY PRO ALA SER ARG TRP ALA LYS SER THR GLU SEQRES 8 A 251 ILE GLY ASP THR ILE GLN ILE GLY GLY PRO GLY LEU LYS SEQRES 9 A 251 LYS LEU ILE ASN LEU ASN ALA GLU TRP PHE LEU LEU ALA SEQRES 10 A 251 GLY ASP MET THR ALA LEU PRO ALA ILE SER VAL ASN LEU SEQRES 11 A 251 THR GLN LEU PRO ASN ASN ALA VAL GLY TYR ALA VAL ILE SEQRES 12 A 251 GLU VAL LEU SER GLU ALA ASP ILE GLN PRO LEU VAL HIS SEQRES 13 A 251 PRO ARG ASN VAL GLN LEU HIS TRP VAL ILE ASN PRO GLU SEQRES 14 A 251 ALA ASP PRO GLU GLY LYS PRO LEU ALA GLU ARG ILE ALA SEQRES 15 A 251 GLN LEU PRO LYS LEU GLU GLY GLN GLY ALA VAL TRP LEU SEQRES 16 A 251 ALA CYS GLU PHE SER SER MET ARG ALA LEU ARG LYS LEU SEQRES 17 A 251 LEU LYS GLN THR TYR ASP LEU PRO LYS SER HIS PHE TYR SEQRES 18 A 251 THR SER SER TYR TRP LYS ILE GLY CYS ASN GLU GLY GLU SEQRES 19 A 251 HIS LYS LEU VAL LYS GLN GLN ASP GLU GLN LEU GLU ASN SEQRES 20 A 251 ASN THR VAL GLY SEQRES 1 B 251 MET ASN ARG PRO ALA PRO ARG GLU LEU THR VAL ILE GLY SEQRES 2 B 251 LYS THR GLN VAL THR PRO HIS MET LEU ARG ILE THR LEU SEQRES 3 B 251 GLY GLY ALA GLY PHE ALA GLY PHE PRO ALA ASP GLN GLU SEQRES 4 B 251 SER ALA TYR ILE LYS LEU LEU PHE PRO GLN GLN GLY ASP SEQRES 5 B 251 GLU ARG PRO LEU MET ARG THR TYR THR ILE ARG GLN GLN SEQRES 6 B 251 ARG MET ASN GLU ILE ASP VAL ASP PHE VAL LEU HIS ASP SEQRES 7 B 251 THR ASP GLY PRO ALA SER ARG TRP ALA LYS SER THR GLU SEQRES 8 B 251 ILE GLY ASP THR ILE GLN ILE GLY GLY PRO GLY LEU LYS SEQRES 9 B 251 LYS LEU ILE ASN LEU ASN ALA GLU TRP PHE LEU LEU ALA SEQRES 10 B 251 GLY ASP MET THR ALA LEU PRO ALA ILE SER VAL ASN LEU SEQRES 11 B 251 THR GLN LEU PRO ASN ASN ALA VAL GLY TYR ALA VAL ILE SEQRES 12 B 251 GLU VAL LEU SER GLU ALA ASP ILE GLN PRO LEU VAL HIS SEQRES 13 B 251 PRO ARG ASN VAL GLN LEU HIS TRP VAL ILE ASN PRO GLU SEQRES 14 B 251 ALA ASP PRO GLU GLY LYS PRO LEU ALA GLU ARG ILE ALA SEQRES 15 B 251 GLN LEU PRO LYS LEU GLU GLY GLN GLY ALA VAL TRP LEU SEQRES 16 B 251 ALA CYS GLU PHE SER SER MET ARG ALA LEU ARG LYS LEU SEQRES 17 B 251 LEU LYS GLN THR TYR ASP LEU PRO LYS SER HIS PHE TYR SEQRES 18 B 251 THR SER SER TYR TRP LYS ILE GLY CYS ASN GLU GLY GLU SEQRES 19 B 251 HIS LYS LEU VAL LYS GLN GLN ASP GLU GLN LEU GLU ASN SEQRES 20 B 251 ASN THR VAL GLY HET FAD A 500 84 HET FAD B 500 84 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *323(H2 O) HELIX 1 AA1 ALA A 29 ALA A 32 5 4 HELIX 2 AA2 GLY A 81 THR A 90 1 10 HELIX 3 AA3 ALA A 122 LEU A 133 1 12 HELIX 4 AA4 SER A 147 ILE A 151 5 5 HELIX 5 AA5 LYS A 175 GLN A 183 1 9 HELIX 6 AA6 PHE A 199 ASP A 214 1 16 HELIX 7 AA7 PRO A 216 SER A 218 5 3 HELIX 8 AA8 ASN A 231 GLU A 246 1 16 HELIX 9 AA9 GLY B 28 ALA B 32 5 5 HELIX 10 AB1 GLY B 81 THR B 90 1 10 HELIX 11 AB2 ALA B 122 LEU B 133 1 12 HELIX 12 AB3 SER B 147 ILE B 151 5 5 HELIX 13 AB4 LYS B 175 GLN B 183 1 9 HELIX 14 AB5 PHE B 199 ASP B 214 1 16 HELIX 15 AB6 PRO B 216 SER B 218 5 3 HELIX 16 AB7 ASN B 231 ASN B 248 1 18 SHEET 1 AA1 7 ARG A 7 THR A 18 0 SHEET 2 AA1 7 MET A 21 GLY A 27 -1 O ARG A 23 N THR A 15 SHEET 3 AA1 7 GLU A 69 VAL A 75 -1 O ILE A 70 N LEU A 26 SHEET 4 AA1 7 LEU A 56 ARG A 66 -1 N ARG A 66 O GLU A 69 SHEET 5 AA1 7 TYR A 42 PHE A 47 -1 N LEU A 45 O ARG A 58 SHEET 6 AA1 7 THR A 95 GLY A 99 -1 O GLY A 99 N LYS A 44 SHEET 7 AA1 7 ARG A 7 THR A 18 -1 N LEU A 9 O ILE A 96 SHEET 1 AA2 5 ASN A 159 ILE A 166 0 SHEET 2 AA2 5 VAL A 138 VAL A 145 1 N ALA A 141 O HIS A 163 SHEET 3 AA2 5 TRP A 113 GLY A 118 1 N LEU A 116 O TYR A 140 SHEET 4 AA2 5 GLY A 191 GLU A 198 1 O ALA A 192 N LEU A 115 SHEET 5 AA2 5 PHE A 220 TRP A 226 1 O TYR A 221 N VAL A 193 SHEET 1 AA3 7 ARG B 7 THR B 18 0 SHEET 2 AA3 7 MET B 21 GLY B 27 -1 O ARG B 23 N THR B 15 SHEET 3 AA3 7 GLU B 69 VAL B 75 -1 O VAL B 72 N ILE B 24 SHEET 4 AA3 7 ASP B 52 ARG B 66 -1 N ARG B 66 O GLU B 69 SHEET 5 AA3 7 TYR B 42 GLN B 49 -1 N PHE B 47 O LEU B 56 SHEET 6 AA3 7 THR B 95 GLY B 99 -1 O GLY B 99 N LYS B 44 SHEET 7 AA3 7 ARG B 7 THR B 18 -1 N LEU B 9 O ILE B 96 SHEET 1 AA4 5 VAL B 160 ILE B 166 0 SHEET 2 AA4 5 GLY B 139 VAL B 145 1 N ALA B 141 O HIS B 163 SHEET 3 AA4 5 TRP B 113 GLY B 118 1 N LEU B 116 O VAL B 142 SHEET 4 AA4 5 GLY B 191 GLU B 198 1 O ALA B 192 N LEU B 115 SHEET 5 AA4 5 PHE B 220 TRP B 226 1 O TYR B 225 N CYS B 197 CISPEP 1 GLY A 100 PRO A 101 0 4.73 CISPEP 2 GLY B 100 PRO B 101 0 7.96 CRYST1 82.441 82.441 250.852 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012130 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003986 0.00000 MTRIX1 1 -0.651442 -0.749998 0.114570 74.92221 1 MTRIX2 1 0.732852 -0.661114 -0.160799 -25.13560 1 MTRIX3 1 0.196343 -0.020788 0.980315 23.54818 1