HEADER OXIDOREDUCTASE 10-JAN-23 8C5P TITLE E. COLI NFSB MUTANT N71S T41L WITH ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIHYDROPTERIDINE REDUCTASE,FMN-DEPENDENT NITROREDUCTASE; COMPND 5 EC: 1.-.-.-,1.5.1.34; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: DOUBLE MUTANT OF NFSB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: DH5A; SOURCE 5 GENE: NFSB, DPRA, NFNB, NFSI, NTR, B0578, JW0567; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS OXYGEN INSENSITIVE NAD(P)H NITROREDUCTASE, DOUBLE MUTANT, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.DAY,S.A.WHITE,E.I.HYDE REVDAT 2 19-JUN-24 8C5P 1 REMARK REVDAT 1 19-APR-23 8C5P 0 JRNL AUTH M.A.DAY,A.J.CHRISTOFFERSON,J.L.R.ANDERSON,S.O.VASS,A.EVANS, JRNL AUTH 2 P.F.SEARLE,S.A.WHITE,E.I.HYDE JRNL TITL STRUCTURE AND DYNAMICS OF THREE ESCHERICHIA COLI NFSB JRNL TITL 2 NITRO-REDUCTASE MUTANTS SELECTED FOR ENHANCED ACTIVITY WITH JRNL TITL 3 THE CANCER PRODRUG CB1954. JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 36983061 JRNL DOI 10.3390/IJMS24065987 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 47036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2499 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3011 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.889 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3676 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3493 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4986 ; 1.818 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8079 ; 0.621 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 5.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ; 6.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 629 ;13.566 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4268 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 784 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1810 ; 2.161 ; 1.568 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1806 ; 2.139 ; 1.565 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2282 ; 2.805 ; 2.812 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2283 ; 2.805 ; 2.812 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1866 ; 3.439 ; 1.905 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1867 ; 3.439 ; 1.906 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2705 ; 5.075 ; 3.302 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4572 ; 6.434 ;18.530 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4401 ; 6.210 ;17.270 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8C5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49521 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 47.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.54 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34800 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-18% PEG 4000, 50-200 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.6, 15% ETHYLENE GLYCOL., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.47200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.61150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.61150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.73600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.61150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.61150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 197.20800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.61150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.61150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.73600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.61150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.61150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 197.20800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 131.47200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 974 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 402 O HOH B 596 1.99 REMARK 500 O ACT B 303 O HOH B 401 2.15 REMARK 500 O HOH B 549 O HOH B 595 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 5 OE1 GLU A 28 5545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 25 CD GLU A 25 OE2 -0.069 REMARK 500 GLU B 102 CD GLU B 102 OE2 0.070 REMARK 500 GLU B 216 CD GLU B 216 OE2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 64 58.66 -92.45 REMARK 500 ASP A 198 93.25 -68.56 REMARK 500 LEU B 41 17.95 57.88 REMARK 500 PRO B 45 56.39 -90.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 129 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 984 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 643 DISTANCE = 6.78 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8C5E RELATED DB: PDB REMARK 900 TRIPLE MUTANT OF PROTEIN REMARK 900 RELATED ID: 8C5F RELATED DB: PDB REMARK 900 TRIPLE MUTANT OF PROTEIN DBREF 8C5P A 1 217 UNP P38489 NFSB_ECOLI 1 217 DBREF 8C5P B 1 217 UNP P38489 NFSB_ECOLI 1 217 SEQADV 8C5P LEU A 41 UNP P38489 THR 41 ENGINEERED MUTATION SEQADV 8C5P SER A 71 UNP P38489 ASN 71 ENGINEERED MUTATION SEQADV 8C5P LEU B 41 UNP P38489 THR 41 ENGINEERED MUTATION SEQADV 8C5P SER B 71 UNP P38489 ASN 71 ENGINEERED MUTATION SEQRES 1 A 217 MET ASP ILE ILE SER VAL ALA LEU LYS ARG HIS SER THR SEQRES 2 A 217 LYS ALA PHE ASP ALA SER LYS LYS LEU THR PRO GLU GLN SEQRES 3 A 217 ALA GLU GLN ILE LYS THR LEU LEU GLN TYR SER PRO SER SEQRES 4 A 217 SER LEU ASN SER GLN PRO TRP HIS PHE ILE VAL ALA SER SEQRES 5 A 217 THR GLU GLU GLY LYS ALA ARG VAL ALA LYS SER ALA ALA SEQRES 6 A 217 GLY ASN TYR VAL PHE SER GLU ARG LYS MET LEU ASP ALA SEQRES 7 A 217 SER HIS VAL VAL VAL PHE CYS ALA LYS THR ALA MET ASP SEQRES 8 A 217 ASP VAL TRP LEU LYS LEU VAL VAL ASP GLN GLU ASP ALA SEQRES 9 A 217 ASP GLY ARG PHE ALA THR PRO GLU ALA LYS ALA ALA ASN SEQRES 10 A 217 ASP LYS GLY ARG LYS PHE PHE ALA ASP MET HIS ARG LYS SEQRES 11 A 217 ASP LEU HIS ASP ASP ALA GLU TRP MET ALA LYS GLN VAL SEQRES 12 A 217 TYR LEU ASN VAL GLY ASN PHE LEU LEU GLY VAL ALA ALA SEQRES 13 A 217 LEU GLY LEU ASP ALA VAL PRO ILE GLU GLY PHE ASP ALA SEQRES 14 A 217 ALA ILE LEU ASP ALA GLU PHE GLY LEU LYS GLU LYS GLY SEQRES 15 A 217 TYR THR SER LEU VAL VAL VAL PRO VAL GLY HIS HIS SER SEQRES 16 A 217 VAL GLU ASP PHE ASN ALA THR LEU PRO LYS SER ARG LEU SEQRES 17 A 217 PRO GLN ASN ILE THR LEU THR GLU VAL SEQRES 1 B 217 MET ASP ILE ILE SER VAL ALA LEU LYS ARG HIS SER THR SEQRES 2 B 217 LYS ALA PHE ASP ALA SER LYS LYS LEU THR PRO GLU GLN SEQRES 3 B 217 ALA GLU GLN ILE LYS THR LEU LEU GLN TYR SER PRO SER SEQRES 4 B 217 SER LEU ASN SER GLN PRO TRP HIS PHE ILE VAL ALA SER SEQRES 5 B 217 THR GLU GLU GLY LYS ALA ARG VAL ALA LYS SER ALA ALA SEQRES 6 B 217 GLY ASN TYR VAL PHE SER GLU ARG LYS MET LEU ASP ALA SEQRES 7 B 217 SER HIS VAL VAL VAL PHE CYS ALA LYS THR ALA MET ASP SEQRES 8 B 217 ASP VAL TRP LEU LYS LEU VAL VAL ASP GLN GLU ASP ALA SEQRES 9 B 217 ASP GLY ARG PHE ALA THR PRO GLU ALA LYS ALA ALA ASN SEQRES 10 B 217 ASP LYS GLY ARG LYS PHE PHE ALA ASP MET HIS ARG LYS SEQRES 11 B 217 ASP LEU HIS ASP ASP ALA GLU TRP MET ALA LYS GLN VAL SEQRES 12 B 217 TYR LEU ASN VAL GLY ASN PHE LEU LEU GLY VAL ALA ALA SEQRES 13 B 217 LEU GLY LEU ASP ALA VAL PRO ILE GLU GLY PHE ASP ALA SEQRES 14 B 217 ALA ILE LEU ASP ALA GLU PHE GLY LEU LYS GLU LYS GLY SEQRES 15 B 217 TYR THR SER LEU VAL VAL VAL PRO VAL GLY HIS HIS SER SEQRES 16 B 217 VAL GLU ASP PHE ASN ALA THR LEU PRO LYS SER ARG LEU SEQRES 17 B 217 PRO GLN ASN ILE THR LEU THR GLU VAL HET FMN A 601 31 HET EDO A 602 8 HET DMS A 603 4 HET EDO A 604 4 HET DMS A 605 4 HET EDO A 606 4 HET ACT A 607 4 HET FMN B 301 31 HET EDO B 302 8 HET ACT B 303 8 HET EDO B 304 4 HET ACT B 305 4 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM ACT ACETATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 5 DMS 2(C2 H6 O S) FORMUL 9 ACT 3(C2 H3 O2 1-) FORMUL 15 HOH *522(H2 O) HELIX 1 AA1 ASP A 2 ARG A 10 1 9 HELIX 2 AA2 THR A 23 SER A 37 1 15 HELIX 3 AA3 SER A 39 SER A 43 5 5 HELIX 4 AA4 THR A 53 LYS A 62 1 10 HELIX 5 AA5 SER A 63 ALA A 64 5 2 HELIX 6 AA6 ALA A 65 PHE A 70 5 6 HELIX 7 AA7 SER A 71 ALA A 78 1 8 HELIX 8 AA8 ASP A 91 ASP A 105 1 15 HELIX 9 AA9 THR A 110 ASP A 131 1 22 HELIX 10 AB1 ASP A 134 LEU A 157 1 24 HELIX 11 AB2 ASP A 168 PHE A 176 1 9 HELIX 12 AB3 GLY A 177 GLY A 182 1 6 HELIX 13 AB4 ASP A 198 THR A 202 5 5 HELIX 14 AB5 PRO A 209 THR A 213 1 5 HELIX 15 AB6 ILE B 3 ARG B 10 1 8 HELIX 16 AB7 THR B 23 SER B 37 1 15 HELIX 17 AB8 SER B 39 SER B 43 5 5 HELIX 18 AB9 THR B 53 LYS B 62 1 10 HELIX 19 AC1 SER B 63 ALA B 65 5 3 HELIX 20 AC2 TYR B 68 ALA B 78 1 11 HELIX 21 AC3 ASP B 91 ASP B 105 1 15 HELIX 22 AC4 THR B 110 ASP B 131 1 22 HELIX 23 AC5 ASP B 134 LEU B 157 1 24 HELIX 24 AC6 ASP B 168 GLY B 177 1 10 HELIX 25 AC7 GLY B 177 GLY B 182 1 6 HELIX 26 AC8 ASP B 198 THR B 202 5 5 HELIX 27 AC9 PRO B 209 THR B 213 1 5 SHEET 1 AA1 5 ASP A 160 ALA A 161 0 SHEET 2 AA1 5 TYR A 183 GLY A 192 -1 O GLY A 192 N ASP A 160 SHEET 3 AA1 5 HIS A 80 LYS A 87 -1 N HIS A 80 O VAL A 191 SHEET 4 AA1 5 TRP A 46 ALA A 51 -1 N ALA A 51 O VAL A 81 SHEET 5 AA1 5 LEU B 214 GLU B 216 1 O THR B 215 N VAL A 50 SHEET 1 AA2 5 LEU A 214 VAL A 217 0 SHEET 2 AA2 5 TRP B 46 ALA B 51 1 O PHE B 48 N THR A 215 SHEET 3 AA2 5 HIS B 80 LYS B 87 -1 O VAL B 83 N ILE B 49 SHEET 4 AA2 5 TYR B 183 GLY B 192 -1 O VAL B 187 N PHE B 84 SHEET 5 AA2 5 ASP B 160 ALA B 161 -1 N ASP B 160 O GLY B 192 CRYST1 57.223 57.223 262.944 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017475 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003803 0.00000