HEADER VIRUS LIKE PARTICLE 11-JAN-23 8C6D TITLE PRODUCTION OF ANTIGENICALLY STABLE ENTEROVIRUS A71 VIRUS-LIKE TITLE 2 PARTICLES IN PICHIA PASTORIS AS A VACCINE CANDIDATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GENOME POLYPROTEIN (FRAGMENT); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GENOME POLYPROTEIN; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS A71; SOURCE 3 ORGANISM_TAXID: 39054; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ENTEROVIRUS A71; SOURCE 8 ORGANISM_TAXID: 39054; SOURCE 9 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: ENTEROVIRUS A71; SOURCE 13 ORGANISM_TAXID: 39054; SOURCE 14 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS EVA71, ENTEROVIRUS, VLP, RSVLP, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR N.J.KINGSTON,J.S.SNOWDEN,N.J.STONEHOUSE,D.J.ROWLANDS,J.M.HOGLE REVDAT 2 24-JUL-24 8C6D 1 REMARK REVDAT 1 22-FEB-23 8C6D 0 JRNL AUTH N.J.KINGSTON,J.S.SNOWDEN,A.MARTYNA,M.SHEGDAR,K.GREHAN, JRNL AUTH 2 A.TEDCASTLE,E.PEGG,H.FOX,A.J.MACADAM,J.MARTIN,J.M.HOGLE, JRNL AUTH 3 D.J.ROWLANDS,N.J.STONEHOUSE JRNL TITL PRODUCTION OF ANTIGENICALLY STABLE ENTEROVIRUS A71 JRNL TITL 2 VIRUS-LIKE PARTICLES IN PICHIA PASTORIS AS A VACCINE JRNL TITL 3 CANDIDATE. JRNL REF BIORXIV 2023 JRNL REFN ISSN 2692-8205 JRNL PMID 36778240 JRNL DOI 10.1101/2023.01.30.526315 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 11789 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8C6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292126712. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROVIRUS A71 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : RSVLP EXPRESSED IN PICHIA REMARK 245 PASTORIS REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2900.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3108.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.309017 -0.809017 290.51170 REMARK 350 BIOMT2 2 -0.309017 0.809017 -0.500000 179.54611 REMARK 350 BIOMT3 2 0.809017 0.500000 0.309017 -111.87081 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 359.09080 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 359.99830 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 -0.90750 REMARK 350 BIOMT1 4 -0.500000 -0.309017 -0.809017 470.50900 REMARK 350 BIOMT2 4 0.309017 0.809017 -0.500000 68.30166 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 178.81606 REMARK 350 BIOMT1 5 -0.500000 0.309017 -0.809017 359.26227 REMARK 350 BIOMT2 5 0.309017 -0.809017 -0.500000 359.54939 REMARK 350 BIOMT3 5 -0.809017 -0.500000 0.309017 359.37194 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 470.79014 REMARK 350 BIOMT2 6 0.809017 -0.500000 0.309017 69.03769 REMARK 350 BIOMT3 6 -0.500000 -0.309017 0.809017 179.82583 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 290.96061 REMARK 350 BIOMT2 7 -0.500000 -0.309017 0.809017 180.73333 REMARK 350 BIOMT3 7 0.309017 0.809017 0.500000 -111.69934 REMARK 350 BIOMT1 8 0.500000 0.309017 -0.809017 179.26497 REMARK 350 BIOMT2 8 0.309017 0.809017 0.500000 -110.79184 REMARK 350 BIOMT3 8 0.809017 -0.500000 0.309017 68.13019 REMARK 350 BIOMT1 9 -0.500000 0.309017 -0.809017 359.26227 REMARK 350 BIOMT2 9 -0.309017 0.809017 0.500000 0.45261 REMARK 350 BIOMT3 9 0.809017 0.500000 -0.309017 -1.18494 REMARK 350 BIOMT1 10 0.000000 0.000000 -1.000000 359.09080 REMARK 350 BIOMT2 10 1.000000 0.000000 0.000000 0.00370 REMARK 350 BIOMT3 10 0.000000 -1.000000 0.000000 359.09450 REMARK 350 BIOMT1 11 -0.500000 -0.309017 -0.809017 470.50900 REMARK 350 BIOMT2 11 -0.309017 -0.809017 0.500000 291.70034 REMARK 350 BIOMT3 11 -0.809017 0.500000 0.309017 179.37094 REMARK 350 BIOMT1 12 -0.809017 -0.500000 0.309017 360.27574 REMARK 350 BIOMT2 12 -0.500000 0.309017 -0.809017 359.26597 REMARK 350 BIOMT3 12 0.309017 -0.809017 -0.500000 358.64189 REMARK 350 BIOMT1 13 0.000000 -1.000000 0.000000 359.99830 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 0.90750 REMARK 350 BIOMT3 13 -1.000000 0.000000 0.000000 359.09080 REMARK 350 BIOMT1 14 -0.809017 0.500000 0.309017 180.27474 REMARK 350 BIOMT2 14 0.500000 0.309017 0.809017 -110.51070 REMARK 350 BIOMT3 14 0.309017 0.809017 -0.500000 67.39416 REMARK 350 BIOMT1 15 0.809017 0.500000 -0.309017 -0.28114 REMARK 350 BIOMT2 15 0.500000 -0.309017 0.809017 0.73603 REMARK 350 BIOMT3 15 0.309017 -0.809017 -0.500000 358.64189 REMARK 350 BIOMT1 16 -0.309017 0.809017 -0.500000 179.54241 REMARK 350 BIOMT2 16 0.809017 0.500000 0.309017 -110.96331 REMARK 350 BIOMT3 16 0.500000 -0.309017 -0.809017 289.60790 REMARK 350 BIOMT1 17 0.500000 -0.309017 -0.809017 290.51170 REMARK 350 BIOMT2 17 0.309017 -0.809017 0.500000 180.45589 REMARK 350 BIOMT3 17 -0.809017 -0.500000 -0.309017 470.05781 REMARK 350 BIOMT1 18 -0.809017 -0.500000 -0.309017 470.96161 REMARK 350 BIOMT2 18 -0.500000 0.309017 0.809017 69.48660 REMARK 350 BIOMT3 18 -0.309017 0.809017 -0.500000 178.63861 REMARK 350 BIOMT1 19 -0.309017 -0.809017 0.500000 291.69664 REMARK 350 BIOMT2 19 -0.809017 0.500000 0.309017 180.27844 REMARK 350 BIOMT3 19 -0.500000 -0.309017 -0.809017 469.60520 REMARK 350 BIOMT1 20 -0.309017 0.809017 0.500000 0.44891 REMARK 350 BIOMT2 20 0.809017 0.500000 -0.309017 -0.27744 REMARK 350 BIOMT3 20 -0.500000 0.309017 -0.809017 358.35847 REMARK 350 BIOMT1 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 -1.000000 0.000000 360.00200 REMARK 350 BIOMT3 21 0.000000 0.000000 -1.000000 358.18700 REMARK 350 BIOMT1 22 0.309017 0.809017 -0.500000 68.29796 REMARK 350 BIOMT2 22 0.809017 -0.500000 -0.309017 179.72356 REMARK 350 BIOMT3 22 -0.500000 -0.309017 -0.809017 469.60520 REMARK 350 BIOMT1 23 0.000000 1.000000 0.000000 -0.00370 REMARK 350 BIOMT2 23 0.000000 0.000000 -1.000000 359.09450 REMARK 350 BIOMT3 23 -1.000000 0.000000 0.000000 359.09080 REMARK 350 BIOMT1 24 0.309017 -0.809017 -0.500000 359.54569 REMARK 350 BIOMT2 24 -0.809017 -0.500000 0.309017 360.27944 REMARK 350 BIOMT3 24 -0.500000 0.309017 -0.809017 358.35847 REMARK 350 BIOMT1 25 -1.000000 0.000000 0.000000 359.99460 REMARK 350 BIOMT2 25 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 25 0.000000 0.000000 -1.000000 358.18700 REMARK 350 BIOMT1 26 0.809017 0.500000 -0.309017 -0.28114 REMARK 350 BIOMT2 26 -0.500000 0.309017 -0.809017 359.26597 REMARK 350 BIOMT3 26 -0.309017 0.809017 0.500000 -0.45489 REMARK 350 BIOMT1 27 0.000000 -1.000000 0.000000 359.99830 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 359.09450 REMARK 350 BIOMT3 27 1.000000 0.000000 0.000000 -0.90380 REMARK 350 BIOMT1 28 -0.809017 0.500000 0.309017 180.27474 REMARK 350 BIOMT2 28 -0.500000 -0.309017 -0.809017 470.51270 REMARK 350 BIOMT3 28 -0.309017 -0.809017 0.500000 290.79284 REMARK 350 BIOMT1 29 -0.500000 -0.309017 0.809017 180.72963 REMARK 350 BIOMT2 29 -0.309017 -0.809017 -0.500000 470.79384 REMARK 350 BIOMT3 29 0.809017 -0.500000 0.309017 68.13019 REMARK 350 BIOMT1 30 0.309017 0.809017 0.500000 -110.79554 REMARK 350 BIOMT2 30 -0.809017 0.500000 -0.309017 290.96431 REMARK 350 BIOMT3 30 -0.500000 -0.309017 0.809017 179.82583 REMARK 350 BIOMT1 31 0.809017 -0.500000 0.309017 69.03399 REMARK 350 BIOMT2 31 0.500000 0.309017 -0.809017 179.26867 REMARK 350 BIOMT3 31 0.309017 0.809017 0.500000 -111.69934 REMARK 350 BIOMT1 32 0.809017 0.500000 0.309017 -110.96701 REMARK 350 BIOMT2 32 0.500000 -0.309017 -0.809017 290.51540 REMARK 350 BIOMT3 32 -0.309017 0.809017 -0.500000 178.63861 REMARK 350 BIOMT1 33 0.309017 -0.809017 0.500000 180.45219 REMARK 350 BIOMT2 33 -0.809017 -0.500000 -0.309017 470.96531 REMARK 350 BIOMT3 33 0.500000 -0.309017 -0.809017 289.60790 REMARK 350 BIOMT1 34 0.809017 -0.500000 -0.309017 179.71986 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 470.51270 REMARK 350 BIOMT3 34 0.309017 0.809017 -0.500000 67.39416 REMARK 350 BIOMT1 35 -0.500000 0.309017 0.809017 69.48290 REMARK 350 BIOMT2 35 -0.309017 0.809017 -0.500000 179.54611 REMARK 350 BIOMT3 35 -0.809017 -0.500000 -0.309017 470.05781 REMARK 350 BIOMT1 36 0.000000 0.000000 1.000000 0.90380 REMARK 350 BIOMT2 36 -1.000000 0.000000 0.000000 359.99830 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 359.09450 REMARK 350 BIOMT1 37 0.500000 0.309017 0.809017 -110.51440 REMARK 350 BIOMT2 37 0.309017 0.809017 -0.500000 68.30166 REMARK 350 BIOMT3 37 -0.809017 0.500000 0.309017 179.37094 REMARK 350 BIOMT1 38 0.500000 -0.309017 0.809017 0.73233 REMARK 350 BIOMT2 38 0.309017 -0.809017 -0.500000 359.54939 REMARK 350 BIOMT3 38 0.809017 0.500000 -0.309017 -1.18494 REMARK 350 BIOMT1 39 0.309017 0.809017 0.500000 -110.79554 REMARK 350 BIOMT2 39 0.809017 -0.500000 0.309017 69.03769 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 178.36117 REMARK 350 BIOMT1 40 0.809017 -0.500000 0.309017 69.03399 REMARK 350 BIOMT2 40 -0.500000 -0.309017 0.809017 180.73333 REMARK 350 BIOMT3 40 -0.309017 -0.809017 -0.500000 469.88634 REMARK 350 BIOMT1 41 -0.500000 -0.309017 0.809017 180.72963 REMARK 350 BIOMT2 41 0.309017 0.809017 0.500000 -110.79184 REMARK 350 BIOMT3 41 -0.809017 0.500000 -0.309017 290.05681 REMARK 350 BIOMT1 42 0.500000 -0.309017 0.809017 0.73233 REMARK 350 BIOMT2 42 -0.309017 0.809017 0.500000 0.45261 REMARK 350 BIOMT3 42 -0.809017 -0.500000 0.309017 359.37194 REMARK 350 BIOMT1 43 0.000000 0.000000 1.000000 0.90380 REMARK 350 BIOMT2 43 1.000000 0.000000 0.000000 0.00370 REMARK 350 BIOMT3 43 0.000000 1.000000 0.000000 -0.90750 REMARK 350 BIOMT1 44 0.500000 0.309017 0.809017 -110.51440 REMARK 350 BIOMT2 44 -0.309017 -0.809017 0.500000 291.70034 REMARK 350 BIOMT3 44 0.809017 -0.500000 -0.309017 178.81606 REMARK 350 BIOMT1 45 0.500000 0.309017 -0.809017 179.26497 REMARK 350 BIOMT2 45 -0.309017 -0.809017 -0.500000 470.79384 REMARK 350 BIOMT3 45 -0.809017 0.500000 -0.309017 290.05681 REMARK 350 BIOMT1 46 0.000000 1.000000 0.000000 -0.00370 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.90750 REMARK 350 BIOMT3 46 1.000000 0.000000 0.000000 -0.90380 REMARK 350 BIOMT1 47 0.809017 -0.500000 -0.309017 179.71986 REMARK 350 BIOMT2 47 0.500000 0.309017 0.809017 -110.51070 REMARK 350 BIOMT3 47 -0.309017 -0.809017 0.500000 290.79284 REMARK 350 BIOMT1 48 -0.809017 -0.500000 0.309017 360.27574 REMARK 350 BIOMT2 48 0.500000 -0.309017 0.809017 0.73603 REMARK 350 BIOMT3 48 -0.309017 0.809017 0.500000 -0.45489 REMARK 350 BIOMT1 49 0.309017 -0.809017 0.500000 180.45219 REMARK 350 BIOMT2 49 0.809017 0.500000 0.309017 -110.96331 REMARK 350 BIOMT3 49 -0.500000 0.309017 0.809017 68.57910 REMARK 350 BIOMT1 50 -0.500000 0.309017 0.809017 69.48290 REMARK 350 BIOMT2 50 0.309017 -0.809017 0.500000 180.45589 REMARK 350 BIOMT3 50 0.809017 0.500000 0.309017 -111.87081 REMARK 350 BIOMT1 51 0.809017 0.500000 0.309017 -110.96701 REMARK 350 BIOMT2 51 -0.500000 0.309017 0.809017 69.48660 REMARK 350 BIOMT3 51 0.309017 -0.809017 0.500000 179.54839 REMARK 350 BIOMT1 52 0.309017 0.809017 -0.500000 68.29796 REMARK 350 BIOMT2 52 -0.809017 0.500000 0.309017 180.27844 REMARK 350 BIOMT3 52 0.500000 0.309017 0.809017 -111.41820 REMARK 350 BIOMT1 53 0.309017 -0.809017 -0.500000 359.54569 REMARK 350 BIOMT2 53 0.809017 0.500000 -0.309017 -0.27744 REMARK 350 BIOMT3 53 0.500000 -0.309017 0.809017 -0.17147 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 359.99460 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 360.00200 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 55 -0.309017 -0.809017 0.500000 291.69664 REMARK 350 BIOMT2 55 0.809017 -0.500000 -0.309017 179.72356 REMARK 350 BIOMT3 55 0.500000 0.309017 0.809017 -111.41820 REMARK 350 BIOMT1 56 -0.309017 -0.809017 -0.500000 470.79014 REMARK 350 BIOMT2 56 -0.809017 0.500000 -0.309017 290.96431 REMARK 350 BIOMT3 56 0.500000 0.309017 -0.809017 178.36117 REMARK 350 BIOMT1 57 -0.309017 0.809017 0.500000 0.44891 REMARK 350 BIOMT2 57 -0.809017 -0.500000 0.309017 360.27944 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 -0.17147 REMARK 350 BIOMT1 58 -0.809017 0.500000 -0.309017 290.96061 REMARK 350 BIOMT2 58 0.500000 0.309017 -0.809017 179.26867 REMARK 350 BIOMT3 58 -0.309017 -0.809017 -0.500000 469.88634 REMARK 350 BIOMT1 59 -0.809017 -0.500000 -0.309017 470.96161 REMARK 350 BIOMT2 59 0.500000 -0.309017 -0.809017 290.51540 REMARK 350 BIOMT3 59 0.309017 -0.809017 0.500000 179.54839 REMARK 350 BIOMT1 60 -0.309017 0.809017 -0.500000 179.54241 REMARK 350 BIOMT2 60 -0.809017 -0.500000 -0.309017 470.96531 REMARK 350 BIOMT3 60 -0.500000 0.309017 0.809017 68.57910 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 MET A 7 REMARK 465 ILE A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 ILE A 12 REMARK 465 GLY A 13 REMARK 465 ASN A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 THR A 21 REMARK 465 GLN A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 GLN A 30 REMARK 465 ASN A 31 REMARK 465 THR A 32 REMARK 465 GLN A 33 REMARK 465 VAL A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 HIS A 37 REMARK 465 ARG A 38 REMARK 465 LEU A 39 REMARK 465 ASP A 40 REMARK 465 THR A 41 REMARK 465 GLY A 42 REMARK 465 GLU A 43 REMARK 465 VAL A 44 REMARK 465 PRO A 45 REMARK 465 ALA A 46 REMARK 465 LEU A 47 REMARK 465 GLN A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 GLU A 51 REMARK 465 ILE A 52 REMARK 465 GLY A 53 REMARK 465 ALA A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 ASN A 57 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 THR B 7 REMARK 465 GLN B 8 REMARK 465 ARG B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 LEU B 46 REMARK 465 LYS B 47 REMARK 465 GLN B 48 REMARK 465 ASP B 49 REMARK 465 PRO B 50 REMARK 465 ASP B 51 REMARK 465 LYS B 52 REMARK 465 PHE B 53 REMARK 465 ALA B 54 REMARK 465 ASN B 55 REMARK 465 PRO B 56 REMARK 465 VAL B 57 REMARK 465 LYS B 58 REMARK 465 ASP B 59 REMARK 465 VAL B 60 REMARK 465 PHE B 61 REMARK 465 THR B 62 REMARK 465 GLU B 63 REMARK 465 MET B 64 REMARK 465 ALA B 65 REMARK 465 ALA B 66 REMARK 465 PRO B 67 REMARK 465 LEU B 68 REMARK 465 LYS B 69 REMARK 465 SER B 70 REMARK 465 PRO B 71 REMARK 465 SER B 72 REMARK 465 ALA B 73 REMARK 465 GLU B 74 REMARK 465 ALA B 75 REMARK 465 CYS B 76 REMARK 465 GLY B 77 REMARK 465 TYR B 78 REMARK 465 SER B 79 REMARK 465 ASP B 80 REMARK 465 ARG B 81 REMARK 465 VAL B 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 80 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 GLU A 217 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 112 109.63 -162.14 REMARK 500 ILE A 262 79.47 60.38 REMARK 500 GLU B 96 79.53 -112.34 REMARK 500 ALA B 97 -13.99 -140.92 REMARK 500 ALA B 98 -12.61 72.25 REMARK 500 ASN B 99 174.40 178.38 REMARK 500 ASP B 126 -22.11 72.76 REMARK 500 VAL B 127 -44.20 -132.37 REMARK 500 PRO B 152 32.02 -96.51 REMARK 500 ASN C 57 47.42 -86.85 REMARK 500 TRP C 171 98.32 -69.74 REMARK 500 ALA C 179 53.14 -95.73 REMARK 500 HIS C 180 77.15 57.59 REMARK 500 THR C 200 -76.83 -97.87 REMARK 500 ASN C 201 158.02 177.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU C 236 -10.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-16450 RELATED DB: EMDB REMARK 900 PRODUCTION OF ANTIGENICALLY STABLE ENTEROVIRUS A71 VIRUS-LIKE REMARK 900 PARTICLES IN PICHIA PASTORIS AS A VACCINE CANDIDATE. DBREF1 8C6D A 1 297 UNP A0A2L1GIK5_HE71 DBREF2 8C6D A A0A2L1GIK5 566 862 DBREF 8C6D B 1 323 UNP D4QGA2 D4QGA2_HE71 1 323 DBREF 8C6D C 1 242 UNP D4QGA4 D4QGA4_HE71 324 565 SEQADV 8C6D CYS A 116 UNP A0A2L1GIK TYR 681 CONFLICT SEQADV 8C6D ILE A 162 UNP A0A2L1GIK LYS 727 CONFLICT SEQADV 8C6D ALA A 246 UNP A0A2L1GIK PRO 811 CONFLICT SEQADV 8C6D MET C 235 UNP D4QGA4 ILE 558 CONFLICT SEQRES 1 A 297 GLY ASP ARG VAL ALA ASP MET ILE GLU SER SER ILE GLY SEQRES 2 A 297 ASN SER VAL SER ARG ALA LEU THR GLN ALA LEU PRO ALA SEQRES 3 A 297 PRO THR GLY GLN ASN THR GLN VAL SER SER HIS ARG LEU SEQRES 4 A 297 ASP THR GLY GLU VAL PRO ALA LEU GLN ALA ALA GLU ILE SEQRES 5 A 297 GLY ALA SER SER ASN THR SER ASP GLU SER MET ILE GLU SEQRES 6 A 297 THR ARG CYS VAL LEU ASN SER HIS SER THR ALA GLU THR SEQRES 7 A 297 THR LEU ASP SER PHE PHE SER ARG ALA GLY LEU VAL GLY SEQRES 8 A 297 GLU ILE ASP LEU PRO LEU GLU GLY THR THR ASN PRO ASN SEQRES 9 A 297 GLY TYR ALA ASN TRP ASP ILE ASP ILE THR GLY CYS ALA SEQRES 10 A 297 GLN MET ARG ARG LYS VAL GLU LEU PHE THR TYR MET ARG SEQRES 11 A 297 PHE ASP ALA GLU PHE THR PHE VAL ALA CYS THR PRO THR SEQRES 12 A 297 GLY GLN VAL VAL PRO GLN LEU LEU GLN TYR MET PHE VAL SEQRES 13 A 297 PRO PRO GLY ALA PRO ILE PRO GLU SER ARG GLU SER LEU SEQRES 14 A 297 ALA TRP GLN THR ALA THR ASN PRO SER VAL PHE VAL LYS SEQRES 15 A 297 LEU THR ASP PRO PRO ALA GLN VAL SER VAL PRO PHE MET SEQRES 16 A 297 SER PRO ALA SER ALA TYR GLN TRP PHE TYR ASP GLY TYR SEQRES 17 A 297 PRO THR PHE GLY GLU HIS LYS GLN GLU LYS ASP LEU GLU SEQRES 18 A 297 TYR GLY ALA CYS PRO ASN ASN MET MET GLY THR PHE SER SEQRES 19 A 297 VAL ARG THR VAL GLY SER SER LYS SER LYS TYR ALA LEU SEQRES 20 A 297 VAL VAL ARG ILE TYR MET ARG MET LYS HIS VAL ARG ALA SEQRES 21 A 297 TRP ILE PRO ARG PRO MET ARG ASN GLN ASN TYR LEU PHE SEQRES 22 A 297 LYS ALA ASN PRO ASN TYR ALA GLY ASP SER ILE LYS PRO SEQRES 23 A 297 THR GLY THR SER ARG ASN ALA ILE THR THR LEU SEQRES 1 B 323 MET GLY SER GLN VAL SER THR GLN ARG SER GLY SER HIS SEQRES 2 B 323 GLU ASN SER ASN SER ALA THR GLU GLY SER THR ILE ASN SEQRES 3 B 323 TYR THR THR ILE ASN TYR TYR LYS ASP SER TYR ALA ALA SEQRES 4 B 323 THR ALA GLY LYS GLN SER LEU LYS GLN ASP PRO ASP LYS SEQRES 5 B 323 PHE ALA ASN PRO VAL LYS ASP VAL PHE THR GLU MET ALA SEQRES 6 B 323 ALA PRO LEU LYS SER PRO SER ALA GLU ALA CYS GLY TYR SEQRES 7 B 323 SER ASP ARG VAL ALA GLN LEU THR ILE GLY ASN SER THR SEQRES 8 B 323 ILE THR THR GLN GLU ALA ALA ASN ILE ILE VAL GLY TYR SEQRES 9 B 323 GLY GLU TRP PRO SER TYR CYS SER ASP ASP ASP ALA THR SEQRES 10 B 323 ALA VAL ASP LYS PRO THR ARG PRO ASP VAL SER VAL ASN SEQRES 11 B 323 ARG PHE TYR THR LEU ASP THR LYS LEU TRP GLU LYS SER SEQRES 12 B 323 SER LYS GLY TRP TYR TRP LYS PHE PRO ASP VAL LEU THR SEQRES 13 B 323 GLU THR GLY VAL PHE GLY GLN ASN ALA GLN PHE HIS TYR SEQRES 14 B 323 LEU TYR ARG SER GLY PHE CYS ILE HIS VAL GLN CYS ASN SEQRES 15 B 323 ALA SER LYS PHE HIS GLN GLY ALA LEU LEU VAL ALA ILE SEQRES 16 B 323 LEU PRO GLU TYR VAL ILE GLY THR VAL ALA GLY GLY THR SEQRES 17 B 323 GLY THR GLU ASP SER HIS PRO PRO TYR ILE GLN THR GLN SEQRES 18 B 323 PRO GLY ALA ASP GLY PHE GLU LEU GLN HIS PRO TYR VAL SEQRES 19 B 323 LEU ASP ALA GLY ILE PRO ILE SER GLN LEU THR VAL CYS SEQRES 20 B 323 PRO HIS GLN TRP ILE ASN LEU ARG THR ASN ASN CYS ALA SEQRES 21 B 323 THR ILE ILE VAL PRO TYR MET ASN THR LEU PRO PHE ASP SEQRES 22 B 323 SER ALA LEU ASN HIS CYS ASN PHE GLY LEU LEU VAL VAL SEQRES 23 B 323 PRO ILE SER PRO LEU ASP PHE ASP GLN GLY ALA THR PRO SEQRES 24 B 323 VAL ILE PRO ILE THR ILE THR LEU ALA PRO MET CYS SER SEQRES 25 B 323 GLU PHE ALA GLY LEU ARG GLN ALA VAL THR GLN SEQRES 1 C 242 GLY PHE PRO THR GLU LEU LYS PRO GLY THR ASN GLN PHE SEQRES 2 C 242 LEU THR THR ASP ASP GLY VAL SER ALA PRO ILE LEU PRO SEQRES 3 C 242 ASN PHE HIS PRO THR PRO CYS ILE HIS ILE PRO GLY GLU SEQRES 4 C 242 VAL ARG ASN LEU LEU GLU LEU CYS GLN VAL GLU THR ILE SEQRES 5 C 242 LEU GLU VAL ASN ASN VAL PRO THR ASN ALA THR SER LEU SEQRES 6 C 242 MET GLU ARG LEU ARG PHE PRO VAL SER ALA GLN ALA GLY SEQRES 7 C 242 LYS GLY GLU LEU CYS ALA VAL PHE ARG ALA ASP PRO GLY SEQRES 8 C 242 ARG ASP GLY PRO TRP GLN SER THR MET LEU GLY GLN LEU SEQRES 9 C 242 CYS GLY TYR TYR THR GLN TRP SER GLY SER LEU GLU VAL SEQRES 10 C 242 THR PHE MET PHE THR GLY SER PHE MET ALA THR GLY LYS SEQRES 11 C 242 MET LEU ILE ALA TYR THR PRO PRO GLY GLY PRO LEU PRO SEQRES 12 C 242 LYS ASP ARG ALA THR ALA MET LEU GLY THR HIS VAL ILE SEQRES 13 C 242 TRP ASP PHE GLY LEU GLN SER SER VAL THR LEU VAL ILE SEQRES 14 C 242 PRO TRP ILE SER ASN THR HIS TYR ARG ALA HIS ALA ARG SEQRES 15 C 242 ASP GLY VAL PHE ASP TYR TYR THR THR GLY LEU VAL SER SEQRES 16 C 242 ILE TRP TYR GLN THR ASN TYR VAL VAL PRO ILE GLY ALA SEQRES 17 C 242 PRO ASN THR ALA TYR ILE ILE ALA LEU ALA ALA ALA GLN SEQRES 18 C 242 LYS ASN PHE THR MET LYS LEU CYS LYS ASP THR SER HIS SEQRES 19 C 242 MET LEU GLN THR ALA SER ILE GLN HET SQS A 401 21 HETNAM SQS (2S,3R,4E)-2-AMINOOCTADEC-4-ENE-1,3-DIOL HETSYN SQS D-SPHINGOSINE FORMUL 4 SQS C18 H37 N O2 HELIX 1 AA1 THR A 75 THR A 78 5 4 HELIX 2 AA2 THR A 79 SER A 85 1 7 HELIX 3 AA3 ASP A 112 GLY A 115 5 4 HELIX 4 AA4 CYS A 116 GLU A 124 1 9 HELIX 5 AA5 SER A 168 THR A 173 5 6 HELIX 6 AA6 LYS A 215 TYR A 222 5 8 HELIX 7 AA7 ASP B 35 ALA B 39 5 5 HELIX 8 AA8 TYR B 104 GLU B 106 5 3 HELIX 9 AA9 PRO B 152 THR B 156 5 5 HELIX 10 AB1 THR B 158 PHE B 167 1 10 HELIX 11 AB2 PRO B 216 GLN B 221 1 6 HELIX 12 AB3 PRO B 240 CYS B 247 5 8 HELIX 13 AB4 LEU C 43 GLN C 48 1 6 HELIX 14 AB5 ASN C 61 ARG C 70 5 10 HELIX 15 AB6 GLY C 94 SER C 98 5 5 HELIX 16 AB7 THR C 99 TYR C 107 1 9 HELIX 17 AB8 ASP C 145 MET C 150 1 6 HELIX 18 AB9 GLY C 184 THR C 190 5 7 SHEET 1 AA1 5 GLY A 88 LEU A 95 0 SHEET 2 AA1 5 LEU A 247 PRO A 263 -1 O LEU A 247 N LEU A 95 SHEET 3 AA1 5 PHE A 126 CYS A 140 -1 N GLU A 134 O ARG A 254 SHEET 4 AA1 5 ALA A 188 VAL A 192 -1 O VAL A 192 N ALA A 133 SHEET 5 AA1 5 ALA C 22 PRO C 23 1 O ALA C 22 N SER A 191 SHEET 1 AA2 4 TYR A 201 GLN A 202 0 SHEET 2 AA2 4 PHE A 126 CYS A 140 -1 N MET A 129 O TYR A 201 SHEET 3 AA2 4 LEU A 247 PRO A 263 -1 O ARG A 254 N GLU A 134 SHEET 4 AA2 4 GLU C 39 VAL C 40 -1 O VAL C 40 N ALA A 260 SHEET 1 AA3 4 TYR A 106 ASP A 110 0 SHEET 2 AA3 4 THR A 232 THR A 237 -1 O PHE A 233 N TRP A 109 SHEET 3 AA3 4 LEU A 150 VAL A 156 -1 N MET A 154 O SER A 234 SHEET 4 AA3 4 SER A 178 LYS A 182 -1 O VAL A 179 N TYR A 153 SHEET 1 AA4 2 TYR B 27 THR B 28 0 SHEET 2 AA4 2 LYS B 43 GLN B 44 -1 O LYS B 43 N THR B 28 SHEET 1 AA5 2 GLN B 84 ILE B 87 0 SHEET 2 AA5 2 SER B 90 THR B 93 -1 O ILE B 92 N LEU B 85 SHEET 1 AA6 5 ILE B 101 VAL B 102 0 SHEET 2 AA6 5 CYS B 259 VAL B 264 1 O ILE B 263 N ILE B 101 SHEET 3 AA6 5 HIS B 168 GLN B 180 -1 N PHE B 175 O VAL B 264 SHEET 4 AA6 5 ILE B 301 LEU B 317 -1 O ALA B 308 N CYS B 176 SHEET 5 AA6 5 TYR B 133 THR B 134 -1 N TYR B 133 O LEU B 307 SHEET 1 AA7 5 ILE B 101 VAL B 102 0 SHEET 2 AA7 5 CYS B 259 VAL B 264 1 O ILE B 263 N ILE B 101 SHEET 3 AA7 5 HIS B 168 GLN B 180 -1 N PHE B 175 O VAL B 264 SHEET 4 AA7 5 ILE B 301 LEU B 317 -1 O ALA B 308 N CYS B 176 SHEET 5 AA7 5 LYS B 138 TRP B 140 -1 N LYS B 138 O ILE B 303 SHEET 1 AA8 5 PHE B 227 GLU B 228 0 SHEET 2 AA8 5 TRP B 147 PHE B 151 -1 N TYR B 148 O PHE B 227 SHEET 3 AA8 5 PHE B 281 ASP B 292 -1 O LEU B 283 N TRP B 149 SHEET 4 AA8 5 GLN B 188 PRO B 197 -1 N ALA B 194 O LEU B 284 SHEET 5 AA8 5 HIS B 249 ASN B 253 -1 O GLN B 250 N VAL B 193 SHEET 1 AA9 4 THR C 51 LEU C 53 0 SHEET 2 AA9 4 ILE C 214 ALA C 220 -1 O ALA C 216 N LEU C 53 SHEET 3 AA9 4 LEU C 115 PHE C 121 -1 N THR C 118 O LEU C 217 SHEET 4 AA9 4 SER C 164 ILE C 169 -1 O ILE C 169 N LEU C 115 SHEET 1 AB1 4 LEU C 82 ARG C 87 0 SHEET 2 AB1 4 LEU C 193 TYR C 198 -1 O ILE C 196 N ALA C 84 SHEET 3 AB1 4 LYS C 130 THR C 136 -1 N THR C 136 O LEU C 193 SHEET 4 AB1 4 THR C 153 ASP C 158 -1 O THR C 153 N TYR C 135 SHEET 1 AB2 2 TYR C 108 SER C 112 0 SHEET 2 AB2 2 THR C 225 CYS C 229 -1 O THR C 225 N SER C 112 CISPEP 1 PHE B 151 PRO B 152 0 6.49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000