data_8C7A # _entry.id 8C7A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8C7A pdb_00008c7a 10.2210/pdb8c7a/pdb WWPDB D_1292127942 ? ? BMRB 30914 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet' _pdbx_database_related.db_id 30914 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8C7A _pdbx_database_status.recvd_initial_deposition_date 2023-01-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, B.' 1 0000-0003-0887-5795 'Zalar, M.' 2 ? 'Plavec, J.' 3 ? 'Sket, P.' 4 0000-0003-0508-6010 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int J Mol Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1422-0067 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/ijms241713437 _citation.pdbx_database_id_PubMed 37686239 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zalar, M.' 1 ? primary 'Wang, B.' 2 ? primary 'Plavec, J.' 3 0000-0003-1570-8602 primary 'Sket, P.' 4 0000-0003-0508-6010 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*GP*GP*GP*CP*C)-3') ; _entity.formula_weight 1850.229 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGGGCC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8C7A _struct_ref.pdbx_db_accession 8C7A _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8C7A A 1 ? 6 ? 8C7A 1 ? 6 ? 1 6 2 1 8C7A B 1 ? 6 ? 8C7A 1 ? 6 ? 1 6 3 1 8C7A C 1 ? 6 ? 8C7A 1 ? 6 ? 1 6 4 1 8C7A D 1 ? 6 ? 8C7A 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '1D 1H-15N HSQC' 1 isotropic 3 1 1 '2D 1H-13C HSQC' 1 isotropic 4 1 1 '2D NOESY' 2 isotropic 5 1 2 '2D NOESY' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;2 mM [U-99% 13C; U-99% 15N] DNA (5'-D(*GP*GP*GP*GP*CP*C)-3'), 90% H2O/10% D2O ; '90% H2O/10% D2O' sample_1 solution '2mM DNA, 100 mM potassium chloride, 90% H2O, 10% D2O' 2 ;2 mM [U-99% 13C; U-99% 15N] DNA (5'-D(*GP*GP*GP*GP*CP*C)-3'), 100% D2O ; '100% D2O' sample_2 solution '2mM DNA, 100 mM potassium chloride, 90% H2O, 10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'Uniform NMR System' ? Varian 600 ? 2 'Uniform NMR System' ? Varian 800 ? # _pdbx_nmr_refine.entry_id 8C7A _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 8C7A _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8C7A _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection VNMR ? Varian 2 'chemical shift assignment' Sparky ? Goddard 3 'peak picking' Sparky ? Goddard 4 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 5 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8C7A _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8C7A _struct.title 'Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8C7A _struct_keywords.text 'G-Quadruplex, DNA, c9orf72' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DG 1 O6 ? ? A DG 1 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DG 1 N7 ? ? A DG 1 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 D DG 1 N2 ? ? A DG 1 D DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 D DG 1 N1 ? ? A DG 1 D DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 2 N2 ? ? A DG 2 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 2 N1 ? ? A DG 2 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N1 ? ? ? 1_555 D DG 2 O6 ? ? A DG 2 D DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 N2 ? ? ? 1_555 D DG 2 N7 ? ? A DG 2 D DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 3 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 3 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N1 ? ? ? 1_555 D DG 3 O6 ? ? A DG 3 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 N2 ? ? ? 1_555 D DG 3 N7 ? ? A DG 3 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 4 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 4 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DG 4 O6 ? ? A DG 4 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 N2 ? ? ? 1_555 D DG 4 N7 ? ? A DG 4 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DC 5 O2 ? ? A DC 5 B DC 5 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog18 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DG 1 O6 ? ? B DG 1 C DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DG 1 N7 ? ? B DG 1 C DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? B DG 2 N7 ? ? ? 1_555 C DG 2 N2 ? ? B DG 2 C DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DG 2 N1 ? ? B DG 2 C DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B DG 3 N7 ? ? ? 1_555 C DG 3 N2 ? ? B DG 3 C DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DG 3 N1 ? ? B DG 3 C DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 4 N7 ? ? ? 1_555 C DG 4 N2 ? ? B DG 4 C DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DG 4 N1 ? ? B DG 4 C DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DC 5 O2 ? ? B DC 5 C DC 5 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog27 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DG 1 O6 ? ? C DG 1 D DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DG 1 N7 ? ? C DG 1 D DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? C DG 2 N7 ? ? ? 1_555 D DG 2 N2 ? ? C DG 2 D DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DG 2 N1 ? ? C DG 2 D DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? C DG 3 N7 ? ? ? 1_555 D DG 3 N2 ? ? C DG 3 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DG 3 N1 ? ? C DG 3 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? C DG 4 N7 ? ? ? 1_555 D DG 4 N2 ? ? C DG 4 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DG 4 N1 ? ? C DG 4 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DC 5 N3 ? ? C DC 5 D DC 5 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8C7A _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DC 6 6 6 DC DC B . n C 1 1 DG 1 1 1 DG DG C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 DG 3 3 3 DG DG C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 DC 5 5 5 DC DC C . n C 1 6 DC 6 6 6 DC DC C . n D 1 1 DG 1 1 1 DG DG D . n D 1 2 DG 2 2 2 DG DG D . n D 1 3 DG 3 3 3 DG DG D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DC 5 5 5 DC DC D . n D 1 6 DC 6 6 6 DC DC D . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email primoz.sket@KI.si _pdbx_contact_author.name_first Primoz _pdbx_contact_author.name_last Sket _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0508-6010 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2160 ? 1 MORE -16 ? 1 'SSA (A^2)' 4020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*GP*GP*GP*GP*CP*C)-3') ; 2 ? mM '[U-99% 13C; U-99% 15N]' 2 ;DNA (5'-D(*GP*GP*GP*GP*CP*C)-3') ; 2 ? mM '[U-99% 13C; U-99% 15N]' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.77 108.30 4.47 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.29 108.30 3.99 0.30 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.59 108.30 3.29 0.30 N 4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.65 108.30 2.35 0.30 N 5 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.54 121.90 -4.36 0.70 N 6 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.66 108.30 3.36 0.30 N 7 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.28 121.90 -4.62 0.70 N 8 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 113.20 108.30 4.90 0.30 N 9 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.06 108.30 3.76 0.30 N 10 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.31 108.30 4.01 0.30 N 11 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 113.18 108.30 4.88 0.30 N 12 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 110.93 108.30 2.63 0.30 N 13 1 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 116.65 121.90 -5.25 0.70 N 14 1 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.64 121.90 -4.26 0.70 N 15 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 112.23 108.30 3.93 0.30 N 16 1 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 111.08 108.30 2.78 0.30 N 17 1 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 113.53 108.30 5.23 0.30 N 18 1 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 113.02 108.30 4.72 0.30 N 19 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 112.09 108.30 3.79 0.30 N 20 1 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.69 121.90 -4.21 0.70 N 21 1 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.47 121.90 -4.43 0.70 N 22 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 112.29 108.30 3.99 0.30 N 23 1 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 112.30 108.30 4.00 0.30 N 24 1 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 112.72 108.30 4.42 0.30 N 25 1 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 111.47 108.30 3.17 0.30 N 26 1 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 111.14 108.30 2.84 0.30 N 27 1 N3 D DC 5 ? ? C4 D DC 5 ? ? C5 D DC 5 ? ? 124.31 121.90 2.41 0.40 N 28 1 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.41 121.90 -4.49 0.70 N 29 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.39 108.30 4.09 0.30 N 30 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.55 108.30 3.25 0.30 N 31 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.51 108.30 3.21 0.30 N 32 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.79 108.30 4.49 0.30 N 33 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.63 108.30 3.33 0.30 N 34 2 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.19 121.90 -4.71 0.70 N 35 2 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.26 121.90 -4.64 0.70 N 36 2 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.43 108.30 4.13 0.30 N 37 2 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.27 108.30 3.97 0.30 N 38 2 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 111.61 108.30 3.31 0.30 N 39 2 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 112.62 108.30 4.32 0.30 N 40 2 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.82 108.30 3.52 0.30 N 41 2 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 117.07 121.90 -4.83 0.70 N 42 2 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.64 121.90 -4.26 0.70 N 43 2 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.92 108.30 3.62 0.30 N 44 2 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 112.56 108.30 4.26 0.30 N 45 2 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 113.47 108.30 5.17 0.30 N 46 2 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 111.00 108.30 2.70 0.30 N 47 2 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.25 108.30 2.95 0.30 N 48 2 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.61 121.90 -4.29 0.70 N 49 2 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 110.31 108.30 2.01 0.30 N 50 2 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.52 121.90 -4.38 0.70 N 51 2 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 111.59 108.30 3.29 0.30 N 52 2 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 111.05 108.30 2.75 0.30 N 53 2 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 110.87 108.30 2.57 0.30 N 54 2 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 110.14 108.30 1.84 0.30 N 55 2 N3 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 117.20 121.90 -4.70 0.70 N 56 2 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 111.88 108.30 3.58 0.30 N 57 2 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.17 121.90 -4.73 0.70 N 58 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.83 108.30 4.53 0.30 N 59 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.81 108.30 3.51 0.30 N 60 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.35 108.30 2.05 0.30 N 61 3 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.40 121.90 -4.50 0.70 N 62 3 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.32 121.90 -4.58 0.70 N 63 3 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.94 108.30 3.64 0.30 N 64 3 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.18 108.30 3.88 0.30 N 65 3 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 111.88 108.30 3.58 0.30 N 66 3 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 110.10 108.30 1.80 0.30 N 67 3 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 117.30 121.90 -4.60 0.70 N 68 3 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 112.19 108.30 3.89 0.30 N 69 3 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.07 121.90 -4.83 0.70 N 70 3 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.63 108.30 3.33 0.30 N 71 3 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 111.72 108.30 3.42 0.30 N 72 3 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 111.20 108.30 2.90 0.30 N 73 3 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 113.26 108.30 4.96 0.30 N 74 3 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 110.80 108.30 2.50 0.30 N 75 3 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.11 121.90 -4.79 0.70 N 76 3 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 113.89 108.30 5.59 0.30 N 77 3 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.39 121.90 -4.51 0.70 N 78 3 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 111.88 108.30 3.58 0.30 N 79 3 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 113.06 108.30 4.76 0.30 N 80 3 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 113.22 108.30 4.92 0.30 N 81 3 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 113.00 108.30 4.70 0.30 N 82 3 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 111.64 108.30 3.34 0.30 N 83 3 N3 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 117.23 121.90 -4.67 0.70 N 84 3 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.23 121.90 -4.67 0.70 N 85 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 113.24 108.30 4.94 0.30 N 86 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.98 108.30 4.68 0.30 N 87 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.66 108.30 3.36 0.30 N 88 4 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 126.92 119.70 7.22 1.20 Y 89 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.37 108.30 3.07 0.30 N 90 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.39 108.30 3.09 0.30 N 91 4 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.21 121.90 -4.69 0.70 N 92 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.06 108.30 2.76 0.30 N 93 4 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.49 121.90 -4.41 0.70 N 94 4 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.27 108.30 3.97 0.30 N 95 4 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.19 108.30 3.89 0.30 N 96 4 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 111.73 108.30 3.43 0.30 N 97 4 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 112.02 108.30 3.72 0.30 N 98 4 N3 B DG 4 ? ? C2 B DG 4 ? ? N2 B DG 4 ? ? 115.22 119.90 -4.68 0.70 N 99 4 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 110.54 108.30 2.24 0.30 N 100 4 N3 B DC 5 ? ? C4 B DC 5 ? ? C5 B DC 5 ? ? 124.31 121.90 2.41 0.40 N 101 4 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 111.03 108.30 2.73 0.30 N 102 4 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.57 121.90 -4.33 0.70 N 103 4 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.68 108.30 3.38 0.30 N 104 4 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 111.65 108.30 3.35 0.30 N 105 4 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 110.13 108.30 1.83 0.30 N 106 4 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 110.26 108.30 1.96 0.30 N 107 4 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 110.26 108.30 1.96 0.30 N 108 4 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.12 121.90 -4.78 0.70 N 109 4 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 112.08 108.30 3.78 0.30 N 110 4 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.59 121.90 -4.31 0.70 N 111 4 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 112.68 108.30 4.38 0.30 N 112 4 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 112.97 108.30 4.67 0.30 N 113 4 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 114.17 108.30 5.87 0.30 N 114 4 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 112.82 108.30 4.52 0.30 N 115 4 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 110.42 108.30 2.12 0.30 N 116 4 N3 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 117.05 121.90 -4.85 0.70 N 117 4 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 112.87 108.30 4.57 0.30 N 118 4 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.55 121.90 -4.35 0.70 N 119 5 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.74 108.30 4.44 0.30 N 120 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.42 108.30 5.12 0.30 N 121 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.74 108.30 5.44 0.30 N 122 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.57 108.30 2.27 0.30 N 123 5 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.67 121.90 -4.23 0.70 N 124 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.02 108.30 2.72 0.30 N 125 5 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.41 121.90 -4.49 0.70 N 126 5 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.05 108.30 3.75 0.30 N 127 5 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.07 108.30 3.77 0.30 N 128 5 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 111.55 108.30 3.25 0.30 N 129 5 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 111.41 108.30 3.11 0.30 N 130 5 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.23 108.30 2.93 0.30 N 131 5 N3 B DC 5 ? ? C4 B DC 5 ? ? C5 B DC 5 ? ? 124.31 121.90 2.41 0.40 N 132 5 N1 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 122.72 118.90 3.82 0.60 N 133 5 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 116.80 121.90 -5.10 0.70 N 134 5 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.47 108.30 3.17 0.30 N 135 5 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 111.53 108.30 3.23 0.30 N 136 5 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 110.38 108.30 2.08 0.30 N 137 5 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 112.68 108.30 4.38 0.30 N 138 5 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.60 108.30 3.30 0.30 N 139 5 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.48 121.90 -4.42 0.70 N 140 5 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 111.81 108.30 3.51 0.30 N 141 5 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 112.18 108.30 3.88 0.30 N 142 5 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 112.82 108.30 4.52 0.30 N 143 5 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 113.34 108.30 5.04 0.30 N 144 5 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 111.32 108.30 3.02 0.30 N 145 5 N1 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 122.93 118.90 4.03 0.60 N 146 5 N3 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 116.33 121.90 -5.57 0.70 N 147 5 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.27 121.90 -4.63 0.70 N 148 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.90 108.30 3.60 0.30 N 149 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.56 108.30 3.26 0.30 N 150 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.07 108.30 2.77 0.30 N 151 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.48 108.30 2.18 0.30 N 152 6 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.25 121.90 -4.65 0.70 N 153 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.05 108.30 6.75 0.30 N 154 6 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.39 121.90 -4.51 0.70 N 155 6 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.36 108.30 4.06 0.30 N 156 6 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.82 108.30 4.52 0.30 N 157 6 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.51 108.30 4.21 0.30 N 158 6 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 111.72 108.30 3.42 0.30 N 159 6 N3 B DG 4 ? ? C2 B DG 4 ? ? N2 B DG 4 ? ? 115.52 119.90 -4.38 0.70 N 160 6 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.08 108.30 3.78 0.30 N 161 6 N3 B DC 5 ? ? C4 B DC 5 ? ? C5 B DC 5 ? ? 124.31 121.90 2.41 0.40 N 162 6 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 117.01 121.90 -4.89 0.70 N 163 6 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 112.02 108.30 3.72 0.30 N 164 6 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.49 121.90 -4.41 0.70 N 165 6 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.71 108.30 3.41 0.30 N 166 6 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 111.80 108.30 3.50 0.30 N 167 6 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 111.04 108.30 2.74 0.30 N 168 6 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 113.45 108.30 5.15 0.30 N 169 6 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.52 108.30 3.22 0.30 N 170 6 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.26 121.90 -4.64 0.70 N 171 6 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 112.83 108.30 4.53 0.30 N 172 6 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.33 121.90 -4.57 0.70 N 173 6 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 112.56 108.30 4.26 0.30 N 174 6 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 113.66 108.30 5.36 0.30 N 175 6 "C1'" D DG 3 ? ? "O4'" D DG 3 ? ? "C4'" D DG 3 ? ? 103.90 110.10 -6.20 1.00 N 176 6 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 115.10 108.30 6.80 0.30 N 177 6 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 112.61 108.30 4.31 0.30 N 178 6 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 110.75 108.30 2.45 0.30 N 179 6 N3 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 117.28 121.90 -4.62 0.70 N 180 6 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 113.45 108.30 5.15 0.30 N 181 6 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.04 121.90 -4.86 0.70 N 182 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.77 108.30 4.47 0.30 N 183 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.19 108.30 3.89 0.30 N 184 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.41 108.30 2.11 0.30 N 185 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.59 108.30 2.29 0.30 N 186 7 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.12 121.90 -4.78 0.70 N 187 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.47 108.30 3.17 0.30 N 188 7 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.54 121.90 -4.36 0.70 N 189 7 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.00 108.30 3.70 0.30 N 190 7 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.87 108.30 4.57 0.30 N 191 7 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.65 108.30 4.35 0.30 N 192 7 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 112.52 108.30 4.22 0.30 N 193 7 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 110.81 108.30 2.51 0.30 N 194 7 N3 B DC 5 ? ? C4 B DC 5 ? ? C5 B DC 5 ? ? 124.43 121.90 2.53 0.40 N 195 7 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 117.41 121.90 -4.49 0.70 N 196 7 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 111.02 108.30 2.72 0.30 N 197 7 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 122.53 118.90 3.63 0.60 N 198 7 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 116.92 121.90 -4.98 0.70 N 199 7 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.85 108.30 3.55 0.30 N 200 7 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 110.36 108.30 2.06 0.30 N 201 7 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 112.99 108.30 4.69 0.30 N 202 7 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 112.88 108.30 4.58 0.30 N 203 7 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.04 108.30 2.74 0.30 N 204 7 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 116.79 121.90 -5.11 0.70 N 205 7 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 111.34 108.30 3.04 0.30 N 206 7 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.04 121.90 -4.86 0.70 N 207 7 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 112.56 108.30 4.26 0.30 N 208 7 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 112.64 108.30 4.34 0.30 N 209 7 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 113.42 108.30 5.12 0.30 N 210 7 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 110.73 108.30 2.43 0.30 N 211 7 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 111.07 108.30 2.77 0.30 N 212 7 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 112.83 108.30 4.53 0.30 N 213 7 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.15 121.90 -4.75 0.70 N 214 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.52 108.30 4.22 0.30 N 215 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.64 108.30 5.34 0.30 N 216 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.93 108.30 5.63 0.30 N 217 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.14 108.30 1.84 0.30 N 218 8 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.42 121.90 -4.48 0.70 N 219 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.16 108.30 3.86 0.30 N 220 8 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.07 121.90 -4.83 0.70 N 221 8 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.89 108.30 3.59 0.30 N 222 8 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.37 108.30 4.07 0.30 N 223 8 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.03 108.30 3.73 0.30 N 224 8 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 112.14 108.30 3.84 0.30 N 225 8 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.07 108.30 2.77 0.30 N 226 8 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 116.93 121.90 -4.97 0.70 N 227 8 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.43 121.90 -4.47 0.70 N 228 8 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.66 108.30 3.36 0.30 N 229 8 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 112.85 108.30 4.55 0.30 N 230 8 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 113.64 108.30 5.34 0.30 N 231 8 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 112.68 108.30 4.38 0.30 N 232 8 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.49 108.30 3.19 0.30 N 233 8 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.58 121.90 -4.32 0.70 N 234 8 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.35 121.90 -4.55 0.70 N 235 8 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 111.01 108.30 2.71 0.30 N 236 8 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 111.40 108.30 3.10 0.30 N 237 8 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 110.98 108.30 2.68 0.30 N 238 8 N3 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 117.29 121.90 -4.61 0.70 N 239 8 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 111.23 108.30 2.93 0.30 N 240 8 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 116.99 121.90 -4.91 0.70 N 241 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.49 108.30 4.19 0.30 N 242 9 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.72 108.30 3.42 0.30 N 243 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.67 108.30 3.37 0.30 N 244 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.72 108.30 2.42 0.30 N 245 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.65 108.30 2.35 0.30 N 246 9 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 116.87 121.90 -5.03 0.70 N 247 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.15 108.30 1.85 0.30 N 248 9 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.43 121.90 -4.47 0.70 N 249 9 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.31 108.30 4.01 0.30 N 250 9 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.13 108.30 2.83 0.30 N 251 9 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 111.64 108.30 3.34 0.30 N 252 9 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 112.30 108.30 4.00 0.30 N 253 9 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.91 108.30 3.61 0.30 N 254 9 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 117.57 121.90 -4.33 0.70 N 255 9 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.24 121.90 -4.66 0.70 N 256 9 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 112.16 108.30 3.86 0.30 N 257 9 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 111.92 108.30 3.62 0.30 N 258 9 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 111.13 108.30 2.83 0.30 N 259 9 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 111.69 108.30 3.39 0.30 N 260 9 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.00 108.30 2.70 0.30 N 261 9 N3 C DC 5 ? ? C4 C DC 5 ? ? C5 C DC 5 ? ? 124.40 121.90 2.50 0.40 N 262 9 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.05 121.90 -4.85 0.70 N 263 9 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.25 121.90 -4.65 0.70 N 264 9 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 111.57 108.30 3.27 0.30 N 265 9 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 112.16 108.30 3.86 0.30 N 266 9 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 113.67 108.30 5.37 0.30 N 267 9 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 110.74 108.30 2.44 0.30 N 268 9 N3 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 117.40 121.90 -4.50 0.70 N 269 9 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 111.91 108.30 3.61 0.30 N 270 9 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.20 121.90 -4.70 0.70 N 271 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.54 108.30 4.24 0.30 N 272 10 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.21 108.30 4.91 0.30 N 273 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.66 108.30 5.36 0.30 N 274 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.40 108.30 2.10 0.30 N 275 10 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.27 121.90 -4.63 0.70 N 276 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.37 108.30 3.07 0.30 N 277 10 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.18 121.90 -4.72 0.70 N 278 10 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 112.18 108.30 3.88 0.30 N 279 10 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.11 108.30 3.81 0.30 N 280 10 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.06 108.30 3.76 0.30 N 281 10 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 113.49 108.30 5.19 0.30 N 282 10 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.05 108.30 3.75 0.30 N 283 10 N3 B DC 5 ? ? C4 B DC 5 ? ? C5 B DC 5 ? ? 124.31 121.90 2.41 0.40 N 284 10 N3 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 116.56 121.90 -5.34 0.70 N 285 10 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.64 121.90 -4.26 0.70 N 286 10 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.90 108.30 3.60 0.30 N 287 10 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 112.81 108.30 4.51 0.30 N 288 10 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 113.71 108.30 5.41 0.30 N 289 10 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 111.90 108.30 3.60 0.30 N 290 10 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.43 108.30 3.13 0.30 N 291 10 N3 C DC 5 ? ? C2 C DC 5 ? ? O2 C DC 5 ? ? 117.63 121.90 -4.27 0.70 N 292 10 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 111.92 108.30 3.62 0.30 N 293 10 N3 C DC 6 ? ? C2 C DC 6 ? ? O2 C DC 6 ? ? 117.46 121.90 -4.44 0.70 N 294 10 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 110.96 108.30 2.66 0.30 N 295 10 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 110.35 108.30 2.05 0.30 N 296 10 "O4'" D DG 3 ? ? "C1'" D DG 3 ? ? N9 D DG 3 ? ? 110.82 108.30 2.52 0.30 N 297 10 N3 D DC 5 ? ? C2 D DC 5 ? ? O2 D DC 5 ? ? 116.95 121.90 -4.95 0.70 N 298 10 N3 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 117.21 121.90 -4.69 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 6 ? ? 0.061 'SIDE CHAIN' 2 1 DG C 4 ? ? 0.067 'SIDE CHAIN' 3 1 DC C 5 ? ? 0.150 'SIDE CHAIN' 4 1 DC D 5 ? ? 0.086 'SIDE CHAIN' 5 2 DG C 4 ? ? 0.061 'SIDE CHAIN' 6 2 DC C 5 ? ? 0.078 'SIDE CHAIN' 7 3 DG A 3 ? ? 0.063 'SIDE CHAIN' 8 3 DG A 4 ? ? 0.065 'SIDE CHAIN' 9 3 DG C 1 ? ? 0.053 'SIDE CHAIN' 10 3 DG C 4 ? ? 0.064 'SIDE CHAIN' 11 4 DG C 1 ? ? 0.059 'SIDE CHAIN' 12 4 DG C 3 ? ? 0.056 'SIDE CHAIN' 13 4 DC C 6 ? ? 0.075 'SIDE CHAIN' 14 4 DG D 3 ? ? 0.061 'SIDE CHAIN' 15 5 DG B 4 ? ? 0.061 'SIDE CHAIN' 16 5 DG C 1 ? ? 0.066 'SIDE CHAIN' 17 5 DG C 4 ? ? 0.076 'SIDE CHAIN' 18 5 DG D 4 ? ? 0.058 'SIDE CHAIN' 19 6 DC A 5 ? ? 0.070 'SIDE CHAIN' 20 6 DC B 5 ? ? 0.065 'SIDE CHAIN' 21 6 DG C 1 ? ? 0.059 'SIDE CHAIN' 22 6 DG C 4 ? ? 0.079 'SIDE CHAIN' 23 6 DC C 6 ? ? 0.063 'SIDE CHAIN' 24 6 DG D 3 ? ? 0.061 'SIDE CHAIN' 25 7 DG A 4 ? ? 0.063 'SIDE CHAIN' 26 7 DC A 5 ? ? 0.092 'SIDE CHAIN' 27 7 DG B 4 ? ? 0.055 'SIDE CHAIN' 28 7 DG C 1 ? ? 0.051 'SIDE CHAIN' 29 7 DG C 2 ? ? 0.066 'SIDE CHAIN' 30 8 DC A 5 ? ? 0.080 'SIDE CHAIN' 31 8 DC B 5 ? ? 0.058 'SIDE CHAIN' 32 8 DC C 5 ? ? 0.082 'SIDE CHAIN' 33 8 DG D 3 ? ? 0.064 'SIDE CHAIN' 34 8 DG D 4 ? ? 0.070 'SIDE CHAIN' 35 9 DG B 4 ? ? 0.090 'SIDE CHAIN' 36 9 DG D 1 ? ? 0.051 'SIDE CHAIN' 37 9 DC D 6 ? ? 0.079 'SIDE CHAIN' 38 10 DC B 6 ? ? 0.065 'SIDE CHAIN' 39 10 DG C 4 ? ? 0.062 'SIDE CHAIN' 40 10 DC C 5 ? ? 0.089 'SIDE CHAIN' 41 10 DG D 1 ? ? 0.065 'SIDE CHAIN' 42 10 DG D 3 ? ? 0.079 'SIDE CHAIN' 43 10 DG D 4 ? ? 0.059 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 # _ndb_struct_conf_na.entry_id 8C7A _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 5 1_555 B DC 5 1_555 1.520 -1.234 -0.424 35.875 15.884 -91.398 1 A_DC5:DC5_B A 5 ? B 5 ? ? 1 1 D DC 5 1_555 C DC 5 1_555 -0.380 3.288 -0.083 -3.566 -57.295 80.396 2 D_DC5:DC5_C D 5 ? C 5 ? ? 3 1 A DG 4 1_555 D DG 4 1_555 -1.822 3.367 -0.451 12.999 -6.324 88.490 3 A_DG4:DG4_D A 4 ? D 4 ? 6 3 1 C DG 3 1_555 D DG 3 1_555 2.202 -2.739 0.484 19.292 27.346 -91.145 4 C_DG3:DG3_D C 3 ? D 3 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 5 1_555 B DC 5 1_555 D DC 5 1_555 C DC 5 1_555 2.510 -2.417 1.706 21.084 21.360 -176.060 1.204 1.261 1.706 -10.686 10.548 -176.194 1 AD_DC5DC5:DC5DC5_CB A 5 ? B 5 ? D 5 ? C 5 ? 1 D DC 5 1_555 C DC 5 1_555 A DG 4 1_555 D DG 4 1_555 -1.706 2.295 2.073 -19.438 -23.581 118.226 1.460 0.867 1.941 -13.626 11.232 120.634 2 DA_DC5DG4:DG4DC5_DC D 5 ? C 5 ? A 4 ? D 4 ? 1 A DG 4 1_555 D DG 4 1_555 C DG 3 1_555 D DG 3 1_555 -0.029 -3.195 3.369 15.846 1.192 -69.002 2.722 0.553 3.356 -1.039 13.804 -70.587 3 AC_DG4DG3:DG3DG4_DD A 4 ? D 4 ? C 3 ? D 3 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Slovenian Research Agency' Slovenia P1-0242 1 'Slovenian Research Agency' Slovenia J1-7108 2 'Slovenian Research Agency' Slovenia J1-6733 3 'Slovenian Research Agency' Slovenia J1-1704 4 'Slovenian Research Agency' Slovenia J3-1759 5 'Slovenian Research Agency' Slovenia J7-9399 6 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR relaxation study' _pdbx_struct_assembly_auth_evidence.details ? #