HEADER DNA BINDING PROTEIN 16-JAN-23 8C7K TITLE YDAS FROM E. COLI O157:H7 CRYPTIC PROPHAGE CP-933P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE ANTIREPRESSOR PROTEIN CRO; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: ECS_2278; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CRO REPRESSOR, HELIX-TURN-HELIX, PROPHAGE, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.PROLIC-KALINSEK,A.N.VOLKOV,R.LORIS REVDAT 2 22-MAR-23 8C7K 1 JRNL REVDAT 1 25-JAN-23 8C7K 0 JRNL AUTH M.PROLIC-KALINSEK,A.N.VOLKOV,S.HADZI,J.VAN DYCK,I.BERVOETS, JRNL AUTH 2 D.CHARLIER,R.LORIS JRNL TITL STRUCTURAL BASIS OF DNA BINDING BY YDAT, A FUNCTIONAL JRNL TITL 2 EQUIVALENT OF THE CII REPRESSOR IN THE CRYPTIC PROPHAGE JRNL TITL 3 CP-933P FROM ESCHERICHIA COLI O157:H7. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 245 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 36876434 JRNL DOI 10.1107/S2059798323001249 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.PROLIC-KALINSEK,P.DE BRUYN,D.JURENAS,L.VAN MELDEREN, REMARK 1 AUTH 2 R.LORIS,A.VOLKOV REMARK 1 TITL 1H, 13C, AND 15N BACKBONE AND SIDE CHAIN CHEMICAL SHIFT REMARK 1 TITL 2 ASSIGNMENT OF YDAS, A MONOMERIC MEMBER OF THE HIGA FAMILY REMARK 1 REF BIOMOLECULAR NMR ASSIGNMENTS V. 14 25 2020 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 31625047 REMARK 1 DOI 10.1007/S12104-019-09915-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127867. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 165 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 YDAS, 20 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 10 % [U- REMARK 210 100% 2H] D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HN(COCA)CB; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; REMARK 210 2D 1H-13C HSQC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D (HB)CB(CGCD) REMARK 210 HD; 2D (HB)CB(CGCDCE)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, MDDNMR, NMRPIPE, CCPNMR REMARK 210 ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 52 9.11 53.91 REMARK 500 2 GLU A 52 12.62 52.29 REMARK 500 3 GLU A 52 9.90 53.94 REMARK 500 3 GLN A 54 -64.97 -109.82 REMARK 500 3 THR A 81 30.88 -84.77 REMARK 500 3 ASP A 89 -141.43 -135.41 REMARK 500 4 GLU A 52 11.15 53.07 REMARK 500 4 GLN A 54 -74.46 -112.20 REMARK 500 4 CYS A 93 9.72 57.94 REMARK 500 4 LEU A 94 41.76 35.88 REMARK 500 5 GLU A 52 0.92 57.76 REMARK 500 5 GLN A 54 -66.09 -108.60 REMARK 500 5 LEU A 94 32.00 -157.31 REMARK 500 6 GLU A 52 11.34 53.68 REMARK 500 7 GLU A 52 9.35 54.05 REMARK 500 7 GLN A 54 -72.08 -113.93 REMARK 500 8 ARG A 36 30.10 -96.52 REMARK 500 8 GLU A 52 13.57 52.91 REMARK 500 9 ARG A 36 32.80 -96.83 REMARK 500 9 GLU A 52 6.84 54.98 REMARK 500 10 GLU A 52 5.91 54.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27917 RELATED DB: BMRB DBREF 8C7K A 1 100 UNP Q8XAD7 Q8XAD7_ECO57 1 100 SEQADV 8C7K GLY A 101 UNP Q8XAD7 EXPRESSION TAG SEQADV 8C7K SER A 102 UNP Q8XAD7 EXPRESSION TAG SEQADV 8C7K SER A 103 UNP Q8XAD7 EXPRESSION TAG SEQADV 8C7K HIS A 104 UNP Q8XAD7 EXPRESSION TAG SEQADV 8C7K HIS A 105 UNP Q8XAD7 EXPRESSION TAG SEQADV 8C7K HIS A 106 UNP Q8XAD7 EXPRESSION TAG SEQADV 8C7K HIS A 107 UNP Q8XAD7 EXPRESSION TAG SEQADV 8C7K HIS A 108 UNP Q8XAD7 EXPRESSION TAG SEQADV 8C7K HIS A 109 UNP Q8XAD7 EXPRESSION TAG SEQRES 1 A 109 MET THR LEU LYS GLU PHE ILE LYS SER LEU ARG VAL GLY SEQRES 2 A 109 ASP ALA LYS LYS PHE ALA ALA ARG LEU GLY VAL SER PRO SEQRES 3 A 109 SER TYR LEU SER GLN MET ALA SER GLY ARG THR ALA ILE SEQRES 4 A 109 SER PRO THR ARG ALA LEU MET ILE GLU SER ALA THR GLU SEQRES 5 A 109 GLY GLN VAL SER ARG ALA GLU LEU ARG PRO HIS ASP TRP SEQRES 6 A 109 GLU LEU ILE TRP PRO GLU TYR ALA SER GLY ILE ARG LEU SEQRES 7 A 109 GLY GLN THR HIS VAL VAL HIS ALA GLU GLY ASP CYS SER SEQRES 8 A 109 ALA CYS LEU SER ASP GLY VAL ASP SER GLY SER SER HIS SEQRES 9 A 109 HIS HIS HIS HIS HIS HELIX 1 AA1 THR A 2 LEU A 10 1 9 HELIX 2 AA2 ARG A 11 GLY A 23 1 13 HELIX 3 AA3 SER A 25 GLY A 35 1 11 HELIX 4 AA4 SER A 40 GLU A 52 1 13 HELIX 5 AA5 SER A 56 ARG A 61 1 6 HELIX 6 AA6 ASP A 64 TRP A 69 1 6 HELIX 7 AA7 TRP A 69 LEU A 78 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1