HEADER TRANSFERASE 17-JAN-23 8C7X TITLE CRYSTAL STRUCTURE OF BRAF IN COMPLEX WITH A HYBRID COMPOUND 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 5 HOMOLOG B1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BRAF, KINASE, KINASE INHIBITOR, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,P.BONNET,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 19-APR-23 8C7X 1 JRNL REVDAT 1 22-FEB-23 8C7X 0 JRNL AUTH R.ARORA,J.T.M.LINDERS,S.ACI-SECHE,T.VERHEYEN,E.VAN HEERDE, JRNL AUTH 2 D.BREHMER,A.CHAIKUAD,S.KNAPP,P.BONNET JRNL TITL DESIGN, SYNTHESIS AND CHARACTERISATION OF A NOVEL TYPE II JRNL TITL 2 B-RAF PARADOX BREAKER INHIBITOR. JRNL REF EUR.J.MED.CHEM. V. 250 15231 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36878151 JRNL DOI 10.1016/J.EJMECH.2023.115231 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 63277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3282 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.1900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4273 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 499 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.398 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4575 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4463 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6160 ; 1.569 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10261 ; 1.461 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 5.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;34.711 ;23.725 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 834 ;11.884 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.937 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 662 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5356 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1062 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2169 ; 1.108 ; 1.076 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2168 ; 1.108 ; 1.074 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2713 ; 1.931 ; 1.603 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2714 ; 1.931 ; 1.606 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2406 ; 1.428 ; 1.257 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2407 ; 1.428 ; 1.257 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3434 ; 2.329 ; 1.803 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5610 ; 6.007 ; 9.685 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5608 ; 6.008 ; 9.685 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 30000 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 449 A 585 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5530 109.2970 16.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.0573 T22: 0.0454 REMARK 3 T33: 0.0120 T12: 0.0035 REMARK 3 T13: -0.0039 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.3876 L22: 0.1881 REMARK 3 L33: 0.2613 L12: -0.0032 REMARK 3 L13: 0.0223 L23: -0.1189 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.0124 S13: 0.0094 REMARK 3 S21: 0.0302 S22: -0.0119 S23: -0.0366 REMARK 3 S31: -0.0216 S32: 0.0092 S33: 0.0161 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 586 A 613 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7450 119.4230 16.3210 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.0623 REMARK 3 T33: 0.0068 T12: 0.0148 REMARK 3 T13: 0.0108 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.0282 L22: 3.0505 REMARK 3 L33: 1.2833 L12: 1.1679 REMARK 3 L13: 0.4721 L23: 1.5781 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: -0.1100 S13: 0.0735 REMARK 3 S21: -0.0789 S22: -0.0580 S23: -0.0556 REMARK 3 S31: -0.1347 S32: -0.0844 S33: -0.0377 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 614 A 722 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9620 121.0250 8.0800 REMARK 3 T TENSOR REMARK 3 T11: 0.0523 T22: 0.0584 REMARK 3 T33: 0.0037 T12: 0.0087 REMARK 3 T13: -0.0005 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2453 L22: 0.5385 REMARK 3 L33: 0.1923 L12: 0.0360 REMARK 3 L13: 0.0736 L23: -0.1209 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: 0.0082 S13: -0.0182 REMARK 3 S21: 0.0153 S22: 0.0291 S23: -0.0168 REMARK 3 S31: -0.0155 S32: -0.0289 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 448 B 569 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6320 88.3970 19.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0373 REMARK 3 T33: 0.0195 T12: -0.0011 REMARK 3 T13: 0.0120 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.5876 L22: 0.7644 REMARK 3 L33: 0.3580 L12: -0.2078 REMARK 3 L13: -0.0690 L23: 0.2759 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0014 S13: -0.0456 REMARK 3 S21: 0.0485 S22: -0.0201 S23: 0.0968 REMARK 3 S31: 0.0378 S32: -0.0259 S33: 0.0125 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 570 B 722 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7930 76.6430 13.1610 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.0386 REMARK 3 T33: 0.0050 T12: 0.0129 REMARK 3 T13: 0.0103 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.7373 L22: 0.7963 REMARK 3 L33: 0.6872 L12: 0.0886 REMARK 3 L13: -0.0384 L23: 0.0392 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.0401 S13: -0.0495 REMARK 3 S21: -0.0335 S22: 0.0117 S23: -0.0253 REMARK 3 S31: 0.0777 S32: 0.0144 S33: 0.0186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8C7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292128009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66629 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 57.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.16600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG3350, 0.1M BIS-TRIS-PROPANE PH REMARK 280 7.0, 0.2M SODIUM BROMIDE, 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.56450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.56450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 440 REMARK 465 ALA A 441 REMARK 465 MET A 442 REMARK 465 ASP A 443 REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 ASP A 448 REMARK 465 GLY A 723 REMARK 465 GLY B 440 REMARK 465 ALA B 441 REMARK 465 MET B 442 REMARK 465 ASP B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 GLY B 723 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 607 OG REMARK 470 HIS A 608 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 600 CG1 CG2 REMARK 470 SER B 614 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 942 O HOH A 1142 4575 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 506 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 506 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 506 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 476 95.50 -164.09 REMARK 500 ALA A 489 127.90 -39.30 REMARK 500 LEU A 514 125.84 -35.75 REMARK 500 ARG A 575 -14.50 82.13 REMARK 500 ASP A 576 44.51 -149.49 REMARK 500 GLU A 586 27.90 46.30 REMARK 500 GLU A 586 26.68 47.65 REMARK 500 ASP A 587 16.76 49.64 REMARK 500 TRP B 476 95.92 -162.72 REMARK 500 ALA B 543 -61.07 -100.34 REMARK 500 ARG B 575 -13.46 77.51 REMARK 500 ASP B 576 44.66 -147.00 REMARK 500 ASP B 587 13.18 55.01 REMARK 500 ASN B 588 -26.04 -142.48 REMARK 500 ASN B 588 -37.58 -136.35 REMARK 500 ASN B 631 80.78 -153.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1195 DISTANCE = 6.06 ANGSTROMS DBREF 8C7X A 444 721 UNP P15056 BRAF_HUMAN 444 721 DBREF 8C7X B 444 721 UNP P15056 BRAF_HUMAN 444 721 SEQADV 8C7X GLY A 440 UNP P15056 EXPRESSION TAG SEQADV 8C7X ALA A 441 UNP P15056 EXPRESSION TAG SEQADV 8C7X MET A 442 UNP P15056 EXPRESSION TAG SEQADV 8C7X ASP A 443 UNP P15056 EXPRESSION TAG SEQADV 8C7X ALA A 543 UNP P15056 ILE 543 CONFLICT SEQADV 8C7X SER A 544 UNP P15056 ILE 544 CONFLICT SEQADV 8C7X LYS A 551 UNP P15056 ILE 551 CONFLICT SEQADV 8C7X ARG A 562 UNP P15056 GLN 562 CONFLICT SEQADV 8C7X ASN A 588 UNP P15056 LEU 588 CONFLICT SEQADV 8C7X SER A 630 UNP P15056 LYS 630 CONFLICT SEQADV 8C7X GLU A 667 UNP P15056 PHE 667 CONFLICT SEQADV 8C7X SER A 673 UNP P15056 TYR 673 CONFLICT SEQADV 8C7X ARG A 688 UNP P15056 ALA 688 CONFLICT SEQADV 8C7X SER A 706 UNP P15056 LEU 706 CONFLICT SEQADV 8C7X ARG A 709 UNP P15056 GLN 709 CONFLICT SEQADV 8C7X GLU A 713 UNP P15056 SER 713 CONFLICT SEQADV 8C7X GLU A 716 UNP P15056 LEU 716 CONFLICT SEQADV 8C7X GLU A 720 UNP P15056 SER 720 CONFLICT SEQADV 8C7X SER A 722 UNP P15056 EXPRESSION TAG SEQADV 8C7X GLY A 723 UNP P15056 EXPRESSION TAG SEQADV 8C7X GLY B 440 UNP P15056 EXPRESSION TAG SEQADV 8C7X ALA B 441 UNP P15056 EXPRESSION TAG SEQADV 8C7X MET B 442 UNP P15056 EXPRESSION TAG SEQADV 8C7X ASP B 443 UNP P15056 EXPRESSION TAG SEQADV 8C7X ALA B 543 UNP P15056 ILE 543 CONFLICT SEQADV 8C7X SER B 544 UNP P15056 ILE 544 CONFLICT SEQADV 8C7X LYS B 551 UNP P15056 ILE 551 CONFLICT SEQADV 8C7X ARG B 562 UNP P15056 GLN 562 CONFLICT SEQADV 8C7X ASN B 588 UNP P15056 LEU 588 CONFLICT SEQADV 8C7X SER B 630 UNP P15056 LYS 630 CONFLICT SEQADV 8C7X GLU B 667 UNP P15056 PHE 667 CONFLICT SEQADV 8C7X SER B 673 UNP P15056 TYR 673 CONFLICT SEQADV 8C7X ARG B 688 UNP P15056 ALA 688 CONFLICT SEQADV 8C7X SER B 706 UNP P15056 LEU 706 CONFLICT SEQADV 8C7X ARG B 709 UNP P15056 GLN 709 CONFLICT SEQADV 8C7X GLU B 713 UNP P15056 SER 713 CONFLICT SEQADV 8C7X GLU B 716 UNP P15056 LEU 716 CONFLICT SEQADV 8C7X GLU B 720 UNP P15056 SER 720 CONFLICT SEQADV 8C7X SER B 722 UNP P15056 EXPRESSION TAG SEQADV 8C7X GLY B 723 UNP P15056 EXPRESSION TAG SEQRES 1 A 284 GLY ALA MET ASP ARG ASP SER SER ASP ASP TRP GLU ILE SEQRES 2 A 284 PRO ASP GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER SEQRES 3 A 284 GLY SER PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY SEQRES 4 A 284 ASP VAL ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR SEQRES 5 A 284 PRO GLN GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL SEQRES 6 A 284 LEU ARG LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET SEQRES 7 A 284 GLY TYR SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN SEQRES 8 A 284 TRP CYS GLU GLY SER SER LEU TYR HIS HIS LEU HIS ALA SEQRES 9 A 284 SER GLU THR LYS PHE GLU MET LYS LYS LEU ILE ASP ILE SEQRES 10 A 284 ALA ARG GLN THR ALA ARG GLY MET ASP TYR LEU HIS ALA SEQRES 11 A 284 LYS SER ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE SEQRES 12 A 284 PHE LEU HIS GLU ASP ASN THR VAL LYS ILE GLY ASP PHE SEQRES 13 A 284 GLY LEU ALA THR VAL LYS SER ARG TRP SER GLY SER HIS SEQRES 14 A 284 GLN PHE GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA SEQRES 15 A 284 PRO GLU VAL ILE ARG MET GLN ASP SER ASN PRO TYR SER SEQRES 16 A 284 PHE GLN SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR SEQRES 17 A 284 GLU LEU MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN SEQRES 18 A 284 ASN ARG ASP GLN ILE ILE GLU MET VAL GLY ARG GLY SER SEQRES 19 A 284 LEU SER PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO SEQRES 20 A 284 LYS ARG MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS SEQRES 21 A 284 LYS ARG ASP GLU ARG PRO SER PHE PRO ARG ILE LEU ALA SEQRES 22 A 284 GLU ILE GLU GLU LEU ALA ARG GLU LEU SER GLY SEQRES 1 B 284 GLY ALA MET ASP ARG ASP SER SER ASP ASP TRP GLU ILE SEQRES 2 B 284 PRO ASP GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER SEQRES 3 B 284 GLY SER PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY SEQRES 4 B 284 ASP VAL ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR SEQRES 5 B 284 PRO GLN GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL SEQRES 6 B 284 LEU ARG LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET SEQRES 7 B 284 GLY TYR SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN SEQRES 8 B 284 TRP CYS GLU GLY SER SER LEU TYR HIS HIS LEU HIS ALA SEQRES 9 B 284 SER GLU THR LYS PHE GLU MET LYS LYS LEU ILE ASP ILE SEQRES 10 B 284 ALA ARG GLN THR ALA ARG GLY MET ASP TYR LEU HIS ALA SEQRES 11 B 284 LYS SER ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE SEQRES 12 B 284 PHE LEU HIS GLU ASP ASN THR VAL LYS ILE GLY ASP PHE SEQRES 13 B 284 GLY LEU ALA THR VAL LYS SER ARG TRP SER GLY SER HIS SEQRES 14 B 284 GLN PHE GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA SEQRES 15 B 284 PRO GLU VAL ILE ARG MET GLN ASP SER ASN PRO TYR SER SEQRES 16 B 284 PHE GLN SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR SEQRES 17 B 284 GLU LEU MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN SEQRES 18 B 284 ASN ARG ASP GLN ILE ILE GLU MET VAL GLY ARG GLY SER SEQRES 19 B 284 LEU SER PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO SEQRES 20 B 284 LYS ARG MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS SEQRES 21 B 284 LYS ARG ASP GLU ARG PRO SER PHE PRO ARG ILE LEU ALA SEQRES 22 B 284 GLU ILE GLU GLU LEU ALA ARG GLU LEU SER GLY HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HET EDO A 804 4 HET EDO A 805 4 HET EDO A 806 4 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HET EDO A 810 4 HET EDO A 811 4 HET EDO A 812 4 HET EDO A 813 4 HET EDO A 814 4 HET EDO A 815 8 HET BR A 816 1 HET BR A 817 1 HET BR A 818 1 HET TXV A 819 34 HET EDO B 801 4 HET EDO B 802 4 HET TXV B 803 34 HETNAM EDO 1,2-ETHANEDIOL HETNAM BR BROMIDE ION HETNAM TXV ~{N}-[3-[(5-CHLORANYL-1~{H}-PYRROLO[2,3-B]PYRIDIN-3- HETNAM 2 TXV YL)CARBONYL]-2,4-BIS(FLUORANYL)PHENYL]-3-(2- HETNAM 3 TXV CYANOPROPAN-2-YL)BENZAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 17(C2 H6 O2) FORMUL 18 BR 3(BR 1-) FORMUL 21 TXV 2(C25 H17 CL F2 N4 O2) FORMUL 25 HOH *499(H2 O) HELIX 1 AA1 THR A 491 ARG A 506 1 16 HELIX 2 AA2 LEU A 537 ALA A 543 1 7 HELIX 3 AA3 GLU A 549 LYS A 570 1 22 HELIX 4 AA4 LYS A 578 ASN A 580 5 3 HELIX 5 AA5 HIS A 608 LEU A 613 1 6 HELIX 6 AA6 SER A 614 MET A 620 5 7 HELIX 7 AA7 ALA A 621 MET A 627 1 7 HELIX 8 AA8 SER A 634 GLY A 652 1 19 HELIX 9 AA9 ASN A 661 GLY A 672 1 12 HELIX 10 AB1 ASP A 677 VAL A 681 5 5 HELIX 11 AB2 PRO A 686 LEU A 697 1 12 HELIX 12 AB3 LYS A 700 ARG A 704 5 5 HELIX 13 AB4 SER A 706 SER A 722 1 17 HELIX 14 AB5 THR B 491 ARG B 506 1 16 HELIX 15 AB6 LEU B 537 ALA B 543 1 7 HELIX 16 AB7 GLU B 549 LYS B 570 1 22 HELIX 17 AB8 LYS B 578 ASN B 580 5 3 HELIX 18 AB9 PHE B 595 THR B 599 5 5 HELIX 19 AC1 SER B 616 MET B 620 5 5 HELIX 20 AC2 ALA B 621 ARG B 626 1 6 HELIX 21 AC3 SER B 634 GLY B 652 1 19 HELIX 22 AC4 ASN B 661 ARG B 671 1 11 HELIX 23 AC5 ASP B 677 VAL B 681 5 5 HELIX 24 AC6 PRO B 686 LEU B 697 1 12 HELIX 25 AC7 LYS B 700 ARG B 704 5 5 HELIX 26 AC8 SER B 706 SER B 722 1 17 SHEET 1 AA1 5 THR A 458 GLY A 466 0 SHEET 2 AA1 5 GLY A 469 LYS A 475 -1 O VAL A 471 N ILE A 463 SHEET 3 AA1 5 ASP A 479 MET A 484 -1 O MET A 484 N THR A 470 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528 SHEET 1 AA2 3 GLY A 534 SER A 536 0 SHEET 2 AA2 3 ILE A 582 HIS A 585 -1 O LEU A 584 N SER A 535 SHEET 3 AA2 3 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 5 THR B 458 SER B 465 0 SHEET 2 AA3 5 THR B 470 LYS B 475 -1 O VAL B 471 N GLY B 464 SHEET 3 AA3 5 ASP B 479 MET B 484 -1 O MET B 484 N THR B 470 SHEET 4 AA3 5 ALA B 526 GLN B 530 -1 O ILE B 527 N LYS B 483 SHEET 5 AA3 5 PHE B 516 SER B 520 -1 N MET B 517 O VAL B 528 SHEET 1 AA4 3 GLY B 534 SER B 536 0 SHEET 2 AA4 3 ILE B 582 HIS B 585 -1 O LEU B 584 N SER B 535 SHEET 3 AA4 3 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583 CISPEP 1 LYS A 522 PRO A 523 0 3.85 CISPEP 2 LYS B 522 PRO B 523 0 6.94 CRYST1 49.129 97.560 114.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008703 0.00000