HEADER TRANSFERASE 17-JAN-23 8C7Y TITLE CRYSTAL STRUCTURE OF BRAF V600E IN COMPLEX WITH A HYBRID COMPOUND 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 5 HOMOLOG B1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BRAF, KINASE, KINASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,P.BONNET,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 19-APR-23 8C7Y 1 JRNL REVDAT 1 22-FEB-23 8C7Y 0 JRNL AUTH R.ARORA,J.T.M.LINDERS,S.ACI-SECHE,T.VERHEYEN,E.VAN HEERDE, JRNL AUTH 2 D.BREHMER,A.CHAIKUAD,S.KNAPP,P.BONNET JRNL TITL DESIGN, SYNTHESIS AND CHARACTERISATION OF A NOVEL TYPE II JRNL TITL 2 B-RAF PARADOX BREAKER INHIBITOR. JRNL REF EUR.J.MED.CHEM. V. 250 15231 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36878151 JRNL DOI 10.1016/J.EJMECH.2023.115231 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 64035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4467 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.1890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.600 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4539 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4422 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6097 ; 1.627 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10161 ; 1.497 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 5.868 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;34.289 ;23.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 821 ;11.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.415 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 653 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5291 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1047 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 1.214 ; 1.105 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2151 ; 1.213 ; 1.103 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2690 ; 2.060 ; 1.647 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2691 ; 2.060 ; 1.650 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2387 ; 1.630 ; 1.319 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2388 ; 1.629 ; 1.319 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3401 ; 2.639 ; 1.872 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5577 ; 6.296 ;10.090 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5575 ; 6.297 ;10.092 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 29564 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 448 A 613 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6650 111.0170 16.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: 0.0338 REMARK 3 T33: 0.0315 T12: -0.0014 REMARK 3 T13: -0.0075 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.5269 L22: 0.2120 REMARK 3 L33: 0.2774 L12: -0.1145 REMARK 3 L13: 0.0489 L23: -0.1541 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0147 S13: 0.0557 REMARK 3 S21: 0.0371 S22: -0.0146 S23: -0.0502 REMARK 3 S31: -0.0348 S32: 0.0121 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 614 A 722 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5910 121.1640 8.0770 REMARK 3 T TENSOR REMARK 3 T11: 0.0464 T22: 0.0415 REMARK 3 T33: 0.0150 T12: 0.0041 REMARK 3 T13: 0.0014 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.3627 L22: 0.8660 REMARK 3 L33: 0.2818 L12: -0.0653 REMARK 3 L13: 0.1431 L23: -0.0894 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 0.0182 S13: -0.0217 REMARK 3 S21: 0.0081 S22: 0.0270 S23: -0.0049 REMARK 3 S31: -0.0289 S32: -0.0189 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 449 B 482 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3200 91.8790 20.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.0239 T22: 0.0157 REMARK 3 T33: 0.0905 T12: -0.0040 REMARK 3 T13: 0.0336 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.6502 L22: 2.8191 REMARK 3 L33: 2.3383 L12: 0.1105 REMARK 3 L13: 0.3933 L23: 1.4699 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.0221 S13: -0.2166 REMARK 3 S21: 0.1944 S22: -0.0747 S23: 0.3364 REMARK 3 S31: 0.0900 S32: -0.0869 S33: 0.0639 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 483 B 722 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2130 80.8720 15.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.0495 T22: 0.0297 REMARK 3 T33: 0.0036 T12: -0.0014 REMARK 3 T13: 0.0006 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4964 L22: 0.9458 REMARK 3 L33: 0.3478 L12: -0.2650 REMARK 3 L13: -0.1683 L23: 0.1351 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.0297 S13: -0.0353 REMARK 3 S21: 0.0120 S22: 0.0018 S23: 0.0195 REMARK 3 S31: 0.0392 S32: 0.0022 S33: 0.0045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8C7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292128010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 74.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG3350, 0.2M SODIUM NITRATE, 5% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.63450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.63950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.86950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.63950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.63450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.86950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 442 REMARK 465 MET A 443 REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 GLY A 723 REMARK 465 SER B 442 REMARK 465 MET B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 ASP B 448 REMARK 465 GLU B 600 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 SER B 614 REMARK 465 GLY B 723 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 607 OG REMARK 470 HIS A 608 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 609 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1115 O HOH A 1156 2.16 REMARK 500 OE2 GLU B 715 O HOH B 901 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 940 O HOH A 1091 4575 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 715 CD GLU A 715 OE2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 626 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 691 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 476 97.28 -162.91 REMARK 500 LEU A 514 127.66 -37.90 REMARK 500 ARG A 575 -13.03 81.15 REMARK 500 ASP A 576 42.10 -149.82 REMARK 500 ASP A 587 42.18 34.87 REMARK 500 ASN A 588 -15.28 -153.44 REMARK 500 SER A 605 83.50 -67.32 REMARK 500 TRP B 476 95.72 -164.94 REMARK 500 ARG B 575 -10.34 77.75 REMARK 500 ASP B 576 43.47 -150.00 REMARK 500 ASP B 587 8.89 59.59 REMARK 500 ASN B 588 -18.02 -147.10 REMARK 500 ASN B 631 81.53 -151.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1187 DISTANCE = 5.97 ANGSTROMS DBREF 8C7Y A 444 721 UNP P15056 BRAF_HUMAN 444 721 DBREF 8C7Y B 444 721 UNP P15056 BRAF_HUMAN 444 721 SEQADV 8C7Y SER A 442 UNP P15056 EXPRESSION TAG SEQADV 8C7Y MET A 443 UNP P15056 EXPRESSION TAG SEQADV 8C7Y ALA A 543 UNP P15056 ILE 543 CONFLICT SEQADV 8C7Y SER A 544 UNP P15056 ILE 544 CONFLICT SEQADV 8C7Y LYS A 551 UNP P15056 ILE 551 CONFLICT SEQADV 8C7Y ARG A 562 UNP P15056 GLN 562 CONFLICT SEQADV 8C7Y ASN A 588 UNP P15056 LEU 588 CONFLICT SEQADV 8C7Y GLU A 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 8C7Y SER A 630 UNP P15056 LYS 630 CONFLICT SEQADV 8C7Y GLU A 667 UNP P15056 PHE 667 CONFLICT SEQADV 8C7Y SER A 673 UNP P15056 TYR 673 CONFLICT SEQADV 8C7Y ARG A 688 UNP P15056 ALA 688 CONFLICT SEQADV 8C7Y SER A 706 UNP P15056 LEU 706 CONFLICT SEQADV 8C7Y ARG A 709 UNP P15056 GLN 709 CONFLICT SEQADV 8C7Y GLU A 713 UNP P15056 SER 713 CONFLICT SEQADV 8C7Y GLU A 716 UNP P15056 LEU 716 CONFLICT SEQADV 8C7Y GLU A 720 UNP P15056 SER 720 CONFLICT SEQADV 8C7Y SER A 722 UNP P15056 EXPRESSION TAG SEQADV 8C7Y GLY A 723 UNP P15056 EXPRESSION TAG SEQADV 8C7Y SER B 442 UNP P15056 EXPRESSION TAG SEQADV 8C7Y MET B 443 UNP P15056 EXPRESSION TAG SEQADV 8C7Y ALA B 543 UNP P15056 ILE 543 CONFLICT SEQADV 8C7Y SER B 544 UNP P15056 ILE 544 CONFLICT SEQADV 8C7Y LYS B 551 UNP P15056 ILE 551 CONFLICT SEQADV 8C7Y ARG B 562 UNP P15056 GLN 562 CONFLICT SEQADV 8C7Y ASN B 588 UNP P15056 LEU 588 CONFLICT SEQADV 8C7Y GLU B 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 8C7Y SER B 630 UNP P15056 LYS 630 CONFLICT SEQADV 8C7Y GLU B 667 UNP P15056 PHE 667 CONFLICT SEQADV 8C7Y SER B 673 UNP P15056 TYR 673 CONFLICT SEQADV 8C7Y ARG B 688 UNP P15056 ALA 688 CONFLICT SEQADV 8C7Y SER B 706 UNP P15056 LEU 706 CONFLICT SEQADV 8C7Y ARG B 709 UNP P15056 GLN 709 CONFLICT SEQADV 8C7Y GLU B 713 UNP P15056 SER 713 CONFLICT SEQADV 8C7Y GLU B 716 UNP P15056 LEU 716 CONFLICT SEQADV 8C7Y GLU B 720 UNP P15056 SER 720 CONFLICT SEQADV 8C7Y SER B 722 UNP P15056 EXPRESSION TAG SEQADV 8C7Y GLY B 723 UNP P15056 EXPRESSION TAG SEQRES 1 A 282 SER MET ARG ASP SER SER ASP ASP TRP GLU ILE PRO ASP SEQRES 2 A 282 GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER SEQRES 3 A 282 PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL SEQRES 4 A 282 ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN SEQRES 5 A 282 GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG SEQRES 6 A 282 LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SEQRES 7 A 282 SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS SEQRES 8 A 282 GLU GLY SER SER LEU TYR HIS HIS LEU HIS ALA SER GLU SEQRES 9 A 282 THR LYS PHE GLU MET LYS LYS LEU ILE ASP ILE ALA ARG SEQRES 10 A 282 GLN THR ALA ARG GLY MET ASP TYR LEU HIS ALA LYS SER SEQRES 11 A 282 ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU SEQRES 12 A 282 HIS GLU ASP ASN THR VAL LYS ILE GLY ASP PHE GLY LEU SEQRES 13 A 282 ALA THR GLU LYS SER ARG TRP SER GLY SER HIS GLN PHE SEQRES 14 A 282 GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU SEQRES 15 A 282 VAL ILE ARG MET GLN ASP SER ASN PRO TYR SER PHE GLN SEQRES 16 A 282 SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU SEQRES 17 A 282 MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG SEQRES 18 A 282 ASP GLN ILE ILE GLU MET VAL GLY ARG GLY SER LEU SER SEQRES 19 A 282 PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO LYS ARG SEQRES 20 A 282 MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG SEQRES 21 A 282 ASP GLU ARG PRO SER PHE PRO ARG ILE LEU ALA GLU ILE SEQRES 22 A 282 GLU GLU LEU ALA ARG GLU LEU SER GLY SEQRES 1 B 282 SER MET ARG ASP SER SER ASP ASP TRP GLU ILE PRO ASP SEQRES 2 B 282 GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER SEQRES 3 B 282 PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL SEQRES 4 B 282 ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN SEQRES 5 B 282 GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG SEQRES 6 B 282 LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SEQRES 7 B 282 SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS SEQRES 8 B 282 GLU GLY SER SER LEU TYR HIS HIS LEU HIS ALA SER GLU SEQRES 9 B 282 THR LYS PHE GLU MET LYS LYS LEU ILE ASP ILE ALA ARG SEQRES 10 B 282 GLN THR ALA ARG GLY MET ASP TYR LEU HIS ALA LYS SER SEQRES 11 B 282 ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU SEQRES 12 B 282 HIS GLU ASP ASN THR VAL LYS ILE GLY ASP PHE GLY LEU SEQRES 13 B 282 ALA THR GLU LYS SER ARG TRP SER GLY SER HIS GLN PHE SEQRES 14 B 282 GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU SEQRES 15 B 282 VAL ILE ARG MET GLN ASP SER ASN PRO TYR SER PHE GLN SEQRES 16 B 282 SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU SEQRES 17 B 282 MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG SEQRES 18 B 282 ASP GLN ILE ILE GLU MET VAL GLY ARG GLY SER LEU SER SEQRES 19 B 282 PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO LYS ARG SEQRES 20 B 282 MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG SEQRES 21 B 282 ASP GLU ARG PRO SER PHE PRO ARG ILE LEU ALA GLU ILE SEQRES 22 B 282 GLU GLU LEU ALA ARG GLU LEU SER GLY HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HET EDO A 804 4 HET EDO A 805 4 HET EDO A 806 4 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HET EDO A 810 4 HET EDO A 811 4 HET EDO A 812 4 HET EDO A 813 4 HET EDO A 814 4 HET EDO A 815 4 HET EDO A 816 8 HET EDO A 817 4 HET NO3 A 818 4 HET TXV A 819 34 HET EDO B 801 4 HET EDO B 802 4 HET TXV B 803 34 HETNAM EDO 1,2-ETHANEDIOL HETNAM NO3 NITRATE ION HETNAM TXV ~{N}-[3-[(5-CHLORANYL-1~{H}-PYRROLO[2,3-B]PYRIDIN-3- HETNAM 2 TXV YL)CARBONYL]-2,4-BIS(FLUORANYL)PHENYL]-3-(2- HETNAM 3 TXV CYANOPROPAN-2-YL)BENZAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 19(C2 H6 O2) FORMUL 20 NO3 N O3 1- FORMUL 21 TXV 2(C25 H17 CL F2 N4 O2) FORMUL 25 HOH *490(H2 O) HELIX 1 AA1 THR A 491 ARG A 506 1 16 HELIX 2 AA2 LEU A 537 SER A 544 1 8 HELIX 3 AA3 GLU A 549 LYS A 570 1 22 HELIX 4 AA4 LYS A 578 ASN A 580 5 3 HELIX 5 AA5 HIS A 608 LEU A 613 1 6 HELIX 6 AA6 SER A 614 MET A 620 5 7 HELIX 7 AA7 ALA A 621 MET A 627 1 7 HELIX 8 AA8 SER A 634 GLY A 652 1 19 HELIX 9 AA9 ASN A 661 ARG A 671 1 11 HELIX 10 AB1 ASP A 677 VAL A 681 5 5 HELIX 11 AB2 PRO A 686 LEU A 697 1 12 HELIX 12 AB3 LYS A 700 ARG A 704 5 5 HELIX 13 AB4 SER A 706 SER A 722 1 17 HELIX 14 AB5 THR B 491 ARG B 506 1 16 HELIX 15 AB6 LEU B 537 ALA B 543 1 7 HELIX 16 AB7 GLU B 549 LYS B 570 1 22 HELIX 17 AB8 LYS B 578 ASN B 580 5 3 HELIX 18 AB9 PHE B 595 THR B 599 5 5 HELIX 19 AC1 SER B 616 MET B 620 5 5 HELIX 20 AC2 ALA B 621 ARG B 626 1 6 HELIX 21 AC3 SER B 634 GLY B 652 1 19 HELIX 22 AC4 ASN B 661 ARG B 671 1 11 HELIX 23 AC5 ASP B 677 VAL B 681 5 5 HELIX 24 AC6 PRO B 686 LEU B 697 1 12 HELIX 25 AC7 LYS B 700 ARG B 704 5 5 HELIX 26 AC8 SER B 706 SER B 722 1 17 SHEET 1 AA1 5 THR A 458 GLY A 466 0 SHEET 2 AA1 5 GLY A 469 LYS A 475 -1 O VAL A 471 N ILE A 463 SHEET 3 AA1 5 ASP A 479 MET A 484 -1 O MET A 484 N THR A 470 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N GLY A 518 O VAL A 528 SHEET 1 AA2 3 GLY A 534 SER A 536 0 SHEET 2 AA2 3 ILE A 582 HIS A 585 -1 O LEU A 584 N SER A 535 SHEET 3 AA2 3 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 5 THR B 458 SER B 465 0 SHEET 2 AA3 5 THR B 470 LYS B 475 -1 O VAL B 471 N ILE B 463 SHEET 3 AA3 5 ASP B 479 MET B 484 -1 O MET B 484 N THR B 470 SHEET 4 AA3 5 ALA B 526 GLN B 530 -1 O ILE B 527 N LYS B 483 SHEET 5 AA3 5 PHE B 516 SER B 520 -1 N MET B 517 O VAL B 528 SHEET 1 AA4 3 GLY B 534 SER B 536 0 SHEET 2 AA4 3 ILE B 582 HIS B 585 -1 O LEU B 584 N SER B 535 SHEET 3 AA4 3 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583 CISPEP 1 LYS A 522 PRO A 523 0 2.89 CISPEP 2 LYS B 522 PRO B 523 0 2.62 CRYST1 49.269 97.739 115.279 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008675 0.00000