data_8C89 # _entry.id 8C89 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8C89 pdb_00008c89 10.2210/pdb8c89/pdb WWPDB D_1292128046 ? ? EMDB EMD-16473 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-10 2 'Structure model' 1 1 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' 8 2 'Structure model' '_citation_author.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8C89 _pdbx_database_status.recvd_initial_deposition_date 2023-01-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)' _pdbx_database_related.db_id EMD-16473 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 5 _pdbx_contact_author.email giuliana.magri@gmail.com _pdbx_contact_author.name_first Giuliana _pdbx_contact_author.name_last Magri _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0163-3542 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Modrego, A.' 1 0000-0001-8383-1915 'Carlero, D.' 2 0000-0002-3605-6378 'Bueno-Carrasco, M.T.' 3 0000-0003-1586-2589 'Santiago, C.' 4 0000-0002-5149-1722 'Carolis, C.' 5 0000-0003-4240-1139 'Arranz, R.' 6 0000-0001-5321-0915 'Blanco, J.' 7 0000-0002-2225-0217 'Magri, G.' 8 0000-0002-0163-3542 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 1051 _citation.page_last 1051 _citation.title 'A monoclonal antibody targeting a large surface of the receptor binding motif shows pan-neutralizing SARS-CoV-2 activity.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-024-45171-9 _citation.pdbx_database_id_PubMed 38316751 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'de Campos-Mata, L.' 1 ? primary 'Trinite, B.' 2 0000-0003-3809-042X primary 'Modrego, A.' 3 ? primary 'Tejedor Vaquero, S.' 4 0000-0003-2873-4981 primary 'Pradenas, E.' 5 0000-0001-5162-8920 primary 'Pons-Grifols, A.' 6 0000-0002-8402-3941 primary 'Rodrigo Melero, N.' 7 ? primary 'Carlero, D.' 8 ? primary 'Marfil, S.' 9 ? primary 'Santiago, C.' 10 0000-0002-5149-1722 primary 'Raich-Regue, D.' 11 0000-0001-7656-5700 primary 'Bueno-Carrasco, M.T.' 12 0000-0003-1586-2589 primary 'Tarres-Freixas, F.' 13 ? primary 'Abanco, F.' 14 ? primary 'Urrea, V.' 15 0000-0002-2577-856X primary 'Izquierdo-Useros, N.' 16 0000-0002-1039-1821 primary 'Riveira-Munoz, E.' 17 ? primary 'Ballana, E.' 18 ? primary 'Perez, M.' 19 ? primary 'Vergara-Alert, J.' 20 ? primary 'Segales, J.' 21 0000-0002-1539-7261 primary 'Carolis, C.' 22 0000-0003-4240-1139 primary 'Arranz, R.' 23 0000-0001-5321-0915 primary 'Blanco, J.' 24 0000-0002-2225-0217 primary 'Magri, G.' 25 0000-0002-0163-3542 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;Spike protein S2' ; 23898.064 1 ? ? ? ? 2 polymer man '17T2 Fab heavy chain' 24231.311 1 ? ? ? ? 3 polymer man '17T2 Fab light chain' 23686.299 1 ? ? ? ? 4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIR GDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGV AGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNL ; ;ESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIR GDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGV AGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNL ; C ? 2 'polypeptide(L)' no no ;QVQLVQSGPEVKKPGTSVKVSCKAPVFTFSISAVQWVRQARGQRLEWIGWIVVGSGNTNYAQNFQERVTITTDMSTGTVY MELSGLRSEDTAMYYCAAPYCNRTTCYDGFDLWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC ; ;QVQLVQSGPEVKKPGTSVKVSCKAPVFTFSISAVQWVRQARGQRLEWIGWIVVGSGNTNYAQNFQERVTITTDMSTGTVY MELSGLRSEDTAMYYCAAPYCNRTTCYDGFDLWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC ; H ? 3 'polypeptide(L)' no no ;EIVLTQSPGTLSLSPGERATLSCRASQSISSNYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSINRLE PEDFAMYYCQHYGGLSRWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; ;EIVLTQSPGTLSLSPGERATLSCRASQSISSNYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSINRLE PEDFAMYYCQHYGGLSRWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 SER n 1 3 ILE n 1 4 VAL n 1 5 ARG n 1 6 PHE n 1 7 PRO n 1 8 ASN n 1 9 ILE n 1 10 THR n 1 11 ASN n 1 12 LEU n 1 13 CYS n 1 14 PRO n 1 15 PHE n 1 16 ASP n 1 17 GLU n 1 18 VAL n 1 19 PHE n 1 20 ASN n 1 21 ALA n 1 22 THR n 1 23 ARG n 1 24 PHE n 1 25 ALA n 1 26 SER n 1 27 VAL n 1 28 TYR n 1 29 ALA n 1 30 TRP n 1 31 ASN n 1 32 ARG n 1 33 LYS n 1 34 ARG n 1 35 ILE n 1 36 SER n 1 37 ASN n 1 38 CYS n 1 39 VAL n 1 40 ALA n 1 41 ASP n 1 42 TYR n 1 43 SER n 1 44 VAL n 1 45 LEU n 1 46 TYR n 1 47 ASN n 1 48 LEU n 1 49 ALA n 1 50 PRO n 1 51 PHE n 1 52 PHE n 1 53 THR n 1 54 PHE n 1 55 LYS n 1 56 CYS n 1 57 TYR n 1 58 GLY n 1 59 VAL n 1 60 SER n 1 61 PRO n 1 62 THR n 1 63 LYS n 1 64 LEU n 1 65 ASN n 1 66 ASP n 1 67 LEU n 1 68 CYS n 1 69 PHE n 1 70 THR n 1 71 ASN n 1 72 VAL n 1 73 TYR n 1 74 ALA n 1 75 ASP n 1 76 SER n 1 77 PHE n 1 78 VAL n 1 79 ILE n 1 80 ARG n 1 81 GLY n 1 82 ASP n 1 83 GLU n 1 84 VAL n 1 85 ARG n 1 86 GLN n 1 87 ILE n 1 88 ALA n 1 89 PRO n 1 90 GLY n 1 91 GLN n 1 92 THR n 1 93 GLY n 1 94 ASN n 1 95 ILE n 1 96 ALA n 1 97 ASP n 1 98 TYR n 1 99 ASN n 1 100 TYR n 1 101 LYS n 1 102 LEU n 1 103 PRO n 1 104 ASP n 1 105 ASP n 1 106 PHE n 1 107 THR n 1 108 GLY n 1 109 CYS n 1 110 VAL n 1 111 ILE n 1 112 ALA n 1 113 TRP n 1 114 ASN n 1 115 SER n 1 116 ASN n 1 117 LYS n 1 118 LEU n 1 119 ASP n 1 120 SER n 1 121 LYS n 1 122 VAL n 1 123 SER n 1 124 GLY n 1 125 ASN n 1 126 TYR n 1 127 ASN n 1 128 TYR n 1 129 LEU n 1 130 TYR n 1 131 ARG n 1 132 LEU n 1 133 PHE n 1 134 ARG n 1 135 LYS n 1 136 SER n 1 137 ASN n 1 138 LEU n 1 139 LYS n 1 140 PRO n 1 141 PHE n 1 142 GLU n 1 143 ARG n 1 144 ASP n 1 145 ILE n 1 146 SER n 1 147 THR n 1 148 GLU n 1 149 ILE n 1 150 TYR n 1 151 GLN n 1 152 ALA n 1 153 GLY n 1 154 ASN n 1 155 LYS n 1 156 PRO n 1 157 CYS n 1 158 ASN n 1 159 GLY n 1 160 VAL n 1 161 ALA n 1 162 GLY n 1 163 PHE n 1 164 ASN n 1 165 CYS n 1 166 TYR n 1 167 PHE n 1 168 PRO n 1 169 LEU n 1 170 ARG n 1 171 SER n 1 172 TYR n 1 173 SER n 1 174 PHE n 1 175 ARG n 1 176 PRO n 1 177 THR n 1 178 TYR n 1 179 GLY n 1 180 VAL n 1 181 GLY n 1 182 HIS n 1 183 GLN n 1 184 PRO n 1 185 TYR n 1 186 ARG n 1 187 VAL n 1 188 VAL n 1 189 VAL n 1 190 LEU n 1 191 SER n 1 192 PHE n 1 193 GLU n 1 194 LEU n 1 195 LEU n 1 196 HIS n 1 197 ALA n 1 198 PRO n 1 199 ALA n 1 200 THR n 1 201 VAL n 1 202 CYS n 1 203 GLY n 1 204 PRO n 1 205 LYS n 1 206 LYS n 1 207 SER n 1 208 THR n 1 209 ASN n 1 210 LEU n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLN n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLU n 2 11 VAL n 2 12 LYS n 2 13 LYS n 2 14 PRO n 2 15 GLY n 2 16 THR n 2 17 SER n 2 18 VAL n 2 19 LYS n 2 20 VAL n 2 21 SER n 2 22 CYS n 2 23 LYS n 2 24 ALA n 2 25 PRO n 2 26 VAL n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 SER n 2 31 ILE n 2 32 SER n 2 33 ALA n 2 34 VAL n 2 35 GLN n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 ALA n 2 41 ARG n 2 42 GLY n 2 43 GLN n 2 44 ARG n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 ILE n 2 49 GLY n 2 50 TRP n 2 51 ILE n 2 52 VAL n 2 53 VAL n 2 54 GLY n 2 55 SER n 2 56 GLY n 2 57 ASN n 2 58 THR n 2 59 ASN n 2 60 TYR n 2 61 ALA n 2 62 GLN n 2 63 ASN n 2 64 PHE n 2 65 GLN n 2 66 GLU n 2 67 ARG n 2 68 VAL n 2 69 THR n 2 70 ILE n 2 71 THR n 2 72 THR n 2 73 ASP n 2 74 MET n 2 75 SER n 2 76 THR n 2 77 GLY n 2 78 THR n 2 79 VAL n 2 80 TYR n 2 81 MET n 2 82 GLU n 2 83 LEU n 2 84 SER n 2 85 GLY n 2 86 LEU n 2 87 ARG n 2 88 SER n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 MET n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ALA n 2 99 PRO n 2 100 TYR n 2 101 CYS n 2 102 ASN n 2 103 ARG n 2 104 THR n 2 105 THR n 2 106 CYS n 2 107 TYR n 2 108 ASP n 2 109 GLY n 2 110 PHE n 2 111 ASP n 2 112 LEU n 2 113 TRP n 2 114 GLY n 2 115 GLN n 2 116 GLY n 2 117 THR n 2 118 MET n 2 119 VAL n 2 120 THR n 2 121 VAL n 2 122 SER n 2 123 SER n 2 124 ALA n 2 125 SER n 2 126 THR n 2 127 LYS n 2 128 GLY n 2 129 PRO n 2 130 SER n 2 131 VAL n 2 132 PHE n 2 133 PRO n 2 134 LEU n 2 135 ALA n 2 136 PRO n 2 137 SER n 2 138 SER n 2 139 LYS n 2 140 SER n 2 141 THR n 2 142 SER n 2 143 GLY n 2 144 GLY n 2 145 THR n 2 146 ALA n 2 147 ALA n 2 148 LEU n 2 149 GLY n 2 150 CYS n 2 151 LEU n 2 152 VAL n 2 153 LYS n 2 154 ASP n 2 155 TYR n 2 156 PHE n 2 157 PRO n 2 158 GLU n 2 159 PRO n 2 160 VAL n 2 161 THR n 2 162 VAL n 2 163 SER n 2 164 TRP n 2 165 ASN n 2 166 SER n 2 167 GLY n 2 168 ALA n 2 169 LEU n 2 170 THR n 2 171 SER n 2 172 GLY n 2 173 VAL n 2 174 HIS n 2 175 THR n 2 176 PHE n 2 177 PRO n 2 178 ALA n 2 179 VAL n 2 180 LEU n 2 181 GLN n 2 182 SER n 2 183 SER n 2 184 GLY n 2 185 LEU n 2 186 TYR n 2 187 SER n 2 188 LEU n 2 189 SER n 2 190 SER n 2 191 VAL n 2 192 VAL n 2 193 THR n 2 194 VAL n 2 195 PRO n 2 196 SER n 2 197 SER n 2 198 SER n 2 199 LEU n 2 200 GLY n 2 201 THR n 2 202 GLN n 2 203 THR n 2 204 TYR n 2 205 ILE n 2 206 CYS n 2 207 ASN n 2 208 VAL n 2 209 ASN n 2 210 HIS n 2 211 LYS n 2 212 PRO n 2 213 SER n 2 214 ASN n 2 215 THR n 2 216 LYS n 2 217 VAL n 2 218 ASP n 2 219 LYS n 2 220 ARG n 2 221 VAL n 2 222 GLU n 2 223 PRO n 2 224 LYS n 2 225 SER n 2 226 CYS n 3 1 GLU n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 GLY n 3 10 THR n 3 11 LEU n 3 12 SER n 3 13 LEU n 3 14 SER n 3 15 PRO n 3 16 GLY n 3 17 GLU n 3 18 ARG n 3 19 ALA n 3 20 THR n 3 21 LEU n 3 22 SER n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 ILE n 3 30 SER n 3 31 SER n 3 32 ASN n 3 33 TYR n 3 34 LEU n 3 35 ALA n 3 36 TRP n 3 37 TYR n 3 38 GLN n 3 39 GLN n 3 40 LYS n 3 41 PRO n 3 42 GLY n 3 43 GLN n 3 44 ALA n 3 45 PRO n 3 46 ARG n 3 47 LEU n 3 48 LEU n 3 49 ILE n 3 50 TYR n 3 51 GLY n 3 52 ALA n 3 53 SER n 3 54 SER n 3 55 ARG n 3 56 ALA n 3 57 THR n 3 58 GLY n 3 59 ILE n 3 60 PRO n 3 61 ASP n 3 62 ARG n 3 63 PHE n 3 64 SER n 3 65 GLY n 3 66 SER n 3 67 GLY n 3 68 SER n 3 69 GLY n 3 70 THR n 3 71 ASP n 3 72 PHE n 3 73 THR n 3 74 LEU n 3 75 SER n 3 76 ILE n 3 77 ASN n 3 78 ARG n 3 79 LEU n 3 80 GLU n 3 81 PRO n 3 82 GLU n 3 83 ASP n 3 84 PHE n 3 85 ALA n 3 86 MET n 3 87 TYR n 3 88 TYR n 3 89 CYS n 3 90 GLN n 3 91 HIS n 3 92 TYR n 3 93 GLY n 3 94 GLY n 3 95 LEU n 3 96 SER n 3 97 ARG n 3 98 TRP n 3 99 THR n 3 100 PHE n 3 101 GLY n 3 102 GLN n 3 103 GLY n 3 104 THR n 3 105 LYS n 3 106 VAL n 3 107 GLU n 3 108 ILE n 3 109 LYS n 3 110 ARG n 3 111 THR n 3 112 VAL n 3 113 ALA n 3 114 ALA n 3 115 PRO n 3 116 SER n 3 117 VAL n 3 118 PHE n 3 119 ILE n 3 120 PHE n 3 121 PRO n 3 122 PRO n 3 123 SER n 3 124 ASP n 3 125 GLU n 3 126 GLN n 3 127 LEU n 3 128 LYS n 3 129 SER n 3 130 GLY n 3 131 THR n 3 132 ALA n 3 133 SER n 3 134 VAL n 3 135 VAL n 3 136 CYS n 3 137 LEU n 3 138 LEU n 3 139 ASN n 3 140 ASN n 3 141 PHE n 3 142 TYR n 3 143 PRO n 3 144 ARG n 3 145 GLU n 3 146 ALA n 3 147 LYS n 3 148 VAL n 3 149 GLN n 3 150 TRP n 3 151 LYS n 3 152 VAL n 3 153 ASP n 3 154 ASN n 3 155 ALA n 3 156 LEU n 3 157 GLN n 3 158 SER n 3 159 GLY n 3 160 ASN n 3 161 SER n 3 162 GLN n 3 163 GLU n 3 164 SER n 3 165 VAL n 3 166 THR n 3 167 GLU n 3 168 GLN n 3 169 ASP n 3 170 SER n 3 171 LYS n 3 172 ASP n 3 173 SER n 3 174 THR n 3 175 TYR n 3 176 SER n 3 177 LEU n 3 178 SER n 3 179 SER n 3 180 THR n 3 181 LEU n 3 182 THR n 3 183 LEU n 3 184 SER n 3 185 LYS n 3 186 ALA n 3 187 ASP n 3 188 TYR n 3 189 GLU n 3 190 LYS n 3 191 HIS n 3 192 LYS n 3 193 VAL n 3 194 TYR n 3 195 ALA n 3 196 CYS n 3 197 GLU n 3 198 VAL n 3 199 THR n 3 200 HIS n 3 201 GLN n 3 202 GLY n 3 203 LEU n 3 204 SER n 3 205 SER n 3 206 PRO n 3 207 VAL n 3 208 THR n 3 209 LYS n 3 210 SER n 3 211 PHE n 3 212 ASN n 3 213 ARG n 3 214 GLY n 3 215 GLU n 3 216 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 210 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus' 2901879 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 226 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? Expi293 ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 216 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? Expi293 ? ? ? ? ? ? ? ? ? # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 324 324 GLU GLU C . n A 1 2 SER 2 325 325 SER SER C . n A 1 3 ILE 3 326 326 ILE ILE C . n A 1 4 VAL 4 327 327 VAL VAL C . n A 1 5 ARG 5 328 328 ARG ARG C . n A 1 6 PHE 6 329 329 PHE PHE C . n A 1 7 PRO 7 330 330 PRO PRO C . n A 1 8 ASN 8 331 331 ASN ASN C . n A 1 9 ILE 9 332 332 ILE ILE C . n A 1 10 THR 10 333 333 THR THR C . n A 1 11 ASN 11 334 334 ASN ASN C . n A 1 12 LEU 12 335 335 LEU LEU C . n A 1 13 CYS 13 336 336 CYS CYS C . n A 1 14 PRO 14 337 337 PRO PRO C . n A 1 15 PHE 15 338 338 PHE PHE C . n A 1 16 ASP 16 339 339 ASP ASP C . n A 1 17 GLU 17 340 340 GLU GLU C . n A 1 18 VAL 18 341 341 VAL VAL C . n A 1 19 PHE 19 342 342 PHE PHE C . n A 1 20 ASN 20 343 343 ASN ASN C . n A 1 21 ALA 21 344 344 ALA ALA C . n A 1 22 THR 22 345 345 THR THR C . n A 1 23 ARG 23 346 346 ARG ARG C . n A 1 24 PHE 24 347 347 PHE PHE C . n A 1 25 ALA 25 348 348 ALA ALA C . n A 1 26 SER 26 349 349 SER SER C . n A 1 27 VAL 27 350 350 VAL VAL C . n A 1 28 TYR 28 351 351 TYR TYR C . n A 1 29 ALA 29 352 352 ALA ALA C . n A 1 30 TRP 30 353 353 TRP TRP C . n A 1 31 ASN 31 354 354 ASN ASN C . n A 1 32 ARG 32 355 355 ARG ARG C . n A 1 33 LYS 33 356 356 LYS LYS C . n A 1 34 ARG 34 357 357 ARG ARG C . n A 1 35 ILE 35 358 358 ILE ILE C . n A 1 36 SER 36 359 359 SER SER C . n A 1 37 ASN 37 360 360 ASN ASN C . n A 1 38 CYS 38 361 361 CYS CYS C . n A 1 39 VAL 39 362 362 VAL VAL C . n A 1 40 ALA 40 363 363 ALA ALA C . n A 1 41 ASP 41 364 364 ASP ASP C . n A 1 42 TYR 42 365 365 TYR TYR C . n A 1 43 SER 43 366 366 SER SER C . n A 1 44 VAL 44 367 367 VAL VAL C . n A 1 45 LEU 45 368 368 LEU LEU C . n A 1 46 TYR 46 369 369 TYR TYR C . n A 1 47 ASN 47 370 370 ASN ASN C . n A 1 48 LEU 48 371 371 LEU LEU C . n A 1 49 ALA 49 372 372 ALA ALA C . n A 1 50 PRO 50 373 373 PRO PRO C . n A 1 51 PHE 51 374 374 PHE PHE C . n A 1 52 PHE 52 375 375 PHE PHE C . n A 1 53 THR 53 376 376 THR THR C . n A 1 54 PHE 54 377 377 PHE PHE C . n A 1 55 LYS 55 378 378 LYS LYS C . n A 1 56 CYS 56 379 379 CYS CYS C . n A 1 57 TYR 57 380 380 TYR TYR C . n A 1 58 GLY 58 381 381 GLY GLY C . n A 1 59 VAL 59 382 382 VAL VAL C . n A 1 60 SER 60 383 383 SER SER C . n A 1 61 PRO 61 384 384 PRO PRO C . n A 1 62 THR 62 385 385 THR THR C . n A 1 63 LYS 63 386 386 LYS LYS C . n A 1 64 LEU 64 387 387 LEU LEU C . n A 1 65 ASN 65 388 388 ASN ASN C . n A 1 66 ASP 66 389 389 ASP ASP C . n A 1 67 LEU 67 390 390 LEU LEU C . n A 1 68 CYS 68 391 391 CYS CYS C . n A 1 69 PHE 69 392 392 PHE PHE C . n A 1 70 THR 70 393 393 THR THR C . n A 1 71 ASN 71 394 394 ASN ASN C . n A 1 72 VAL 72 395 395 VAL VAL C . n A 1 73 TYR 73 396 396 TYR TYR C . n A 1 74 ALA 74 397 397 ALA ALA C . n A 1 75 ASP 75 398 398 ASP ASP C . n A 1 76 SER 76 399 399 SER SER C . n A 1 77 PHE 77 400 400 PHE PHE C . n A 1 78 VAL 78 401 401 VAL VAL C . n A 1 79 ILE 79 402 402 ILE ILE C . n A 1 80 ARG 80 403 403 ARG ARG C . n A 1 81 GLY 81 404 404 GLY GLY C . n A 1 82 ASP 82 405 405 ASP ASP C . n A 1 83 GLU 83 406 406 GLU GLU C . n A 1 84 VAL 84 407 407 VAL VAL C . n A 1 85 ARG 85 408 408 ARG ARG C . n A 1 86 GLN 86 409 409 GLN GLN C . n A 1 87 ILE 87 410 410 ILE ILE C . n A 1 88 ALA 88 411 411 ALA ALA C . n A 1 89 PRO 89 412 412 PRO PRO C . n A 1 90 GLY 90 413 413 GLY GLY C . n A 1 91 GLN 91 414 414 GLN GLN C . n A 1 92 THR 92 415 415 THR THR C . n A 1 93 GLY 93 416 416 GLY GLY C . n A 1 94 ASN 94 417 417 ASN ASN C . n A 1 95 ILE 95 418 418 ILE ILE C . n A 1 96 ALA 96 419 419 ALA ALA C . n A 1 97 ASP 97 420 420 ASP ASP C . n A 1 98 TYR 98 421 421 TYR TYR C . n A 1 99 ASN 99 422 422 ASN ASN C . n A 1 100 TYR 100 423 423 TYR TYR C . n A 1 101 LYS 101 424 424 LYS LYS C . n A 1 102 LEU 102 425 425 LEU LEU C . n A 1 103 PRO 103 426 426 PRO PRO C . n A 1 104 ASP 104 427 427 ASP ASP C . n A 1 105 ASP 105 428 428 ASP ASP C . n A 1 106 PHE 106 429 429 PHE PHE C . n A 1 107 THR 107 430 430 THR THR C . n A 1 108 GLY 108 431 431 GLY GLY C . n A 1 109 CYS 109 432 432 CYS CYS C . n A 1 110 VAL 110 433 433 VAL VAL C . n A 1 111 ILE 111 434 434 ILE ILE C . n A 1 112 ALA 112 435 435 ALA ALA C . n A 1 113 TRP 113 436 436 TRP TRP C . n A 1 114 ASN 114 437 437 ASN ASN C . n A 1 115 SER 115 438 438 SER SER C . n A 1 116 ASN 116 439 439 ASN ASN C . n A 1 117 LYS 117 440 440 LYS LYS C . n A 1 118 LEU 118 441 441 LEU LEU C . n A 1 119 ASP 119 442 442 ASP ASP C . n A 1 120 SER 120 443 443 SER SER C . n A 1 121 LYS 121 444 444 LYS LYS C . n A 1 122 VAL 122 445 445 VAL VAL C . n A 1 123 SER 123 446 446 SER SER C . n A 1 124 GLY 124 447 447 GLY GLY C . n A 1 125 ASN 125 448 448 ASN ASN C . n A 1 126 TYR 126 449 449 TYR TYR C . n A 1 127 ASN 127 450 450 ASN ASN C . n A 1 128 TYR 128 451 451 TYR TYR C . n A 1 129 LEU 129 452 452 LEU LEU C . n A 1 130 TYR 130 453 453 TYR TYR C . n A 1 131 ARG 131 454 454 ARG ARG C . n A 1 132 LEU 132 455 455 LEU LEU C . n A 1 133 PHE 133 456 456 PHE PHE C . n A 1 134 ARG 134 457 457 ARG ARG C . n A 1 135 LYS 135 458 458 LYS LYS C . n A 1 136 SER 136 459 459 SER SER C . n A 1 137 ASN 137 460 460 ASN ASN C . n A 1 138 LEU 138 461 461 LEU LEU C . n A 1 139 LYS 139 462 462 LYS LYS C . n A 1 140 PRO 140 463 463 PRO PRO C . n A 1 141 PHE 141 464 464 PHE PHE C . n A 1 142 GLU 142 465 465 GLU GLU C . n A 1 143 ARG 143 466 466 ARG ARG C . n A 1 144 ASP 144 467 467 ASP ASP C . n A 1 145 ILE 145 468 468 ILE ILE C . n A 1 146 SER 146 469 469 SER SER C . n A 1 147 THR 147 470 470 THR THR C . n A 1 148 GLU 148 471 471 GLU GLU C . n A 1 149 ILE 149 472 472 ILE ILE C . n A 1 150 TYR 150 473 473 TYR TYR C . n A 1 151 GLN 151 474 474 GLN GLN C . n A 1 152 ALA 152 475 475 ALA ALA C . n A 1 153 GLY 153 476 476 GLY GLY C . n A 1 154 ASN 154 477 477 ASN ASN C . n A 1 155 LYS 155 478 478 LYS LYS C . n A 1 156 PRO 156 479 479 PRO PRO C . n A 1 157 CYS 157 480 480 CYS CYS C . n A 1 158 ASN 158 481 481 ASN ASN C . n A 1 159 GLY 159 482 482 GLY GLY C . n A 1 160 VAL 160 483 483 VAL VAL C . n A 1 161 ALA 161 484 484 ALA ALA C . n A 1 162 GLY 162 485 485 GLY GLY C . n A 1 163 PHE 163 486 486 PHE PHE C . n A 1 164 ASN 164 487 487 ASN ASN C . n A 1 165 CYS 165 488 488 CYS CYS C . n A 1 166 TYR 166 489 489 TYR TYR C . n A 1 167 PHE 167 490 490 PHE PHE C . n A 1 168 PRO 168 491 491 PRO PRO C . n A 1 169 LEU 169 492 492 LEU LEU C . n A 1 170 ARG 170 493 493 ARG ARG C . n A 1 171 SER 171 494 494 SER SER C . n A 1 172 TYR 172 495 495 TYR TYR C . n A 1 173 SER 173 496 496 SER SER C . n A 1 174 PHE 174 497 497 PHE PHE C . n A 1 175 ARG 175 498 498 ARG ARG C . n A 1 176 PRO 176 499 499 PRO PRO C . n A 1 177 THR 177 500 500 THR THR C . n A 1 178 TYR 178 501 501 TYR TYR C . n A 1 179 GLY 179 502 502 GLY GLY C . n A 1 180 VAL 180 503 503 VAL VAL C . n A 1 181 GLY 181 504 504 GLY GLY C . n A 1 182 HIS 182 505 505 HIS HIS C . n A 1 183 GLN 183 506 506 GLN GLN C . n A 1 184 PRO 184 507 507 PRO PRO C . n A 1 185 TYR 185 508 508 TYR TYR C . n A 1 186 ARG 186 509 509 ARG ARG C . n A 1 187 VAL 187 510 510 VAL VAL C . n A 1 188 VAL 188 511 511 VAL VAL C . n A 1 189 VAL 189 512 512 VAL VAL C . n A 1 190 LEU 190 513 513 LEU LEU C . n A 1 191 SER 191 514 514 SER SER C . n A 1 192 PHE 192 515 515 PHE PHE C . n A 1 193 GLU 193 516 516 GLU GLU C . n A 1 194 LEU 194 517 517 LEU LEU C . n A 1 195 LEU 195 518 518 LEU LEU C . n A 1 196 HIS 196 519 519 HIS HIS C . n A 1 197 ALA 197 520 520 ALA ALA C . n A 1 198 PRO 198 521 521 PRO PRO C . n A 1 199 ALA 199 522 522 ALA ALA C . n A 1 200 THR 200 523 523 THR THR C . n A 1 201 VAL 201 524 524 VAL VAL C . n A 1 202 CYS 202 525 525 CYS CYS C . n A 1 203 GLY 203 526 526 GLY GLY C . n A 1 204 PRO 204 527 527 PRO PRO C . n A 1 205 LYS 205 528 528 LYS LYS C . n A 1 206 LYS 206 529 529 LYS LYS C . n A 1 207 SER 207 530 530 SER SER C . n A 1 208 THR 208 531 531 THR THR C . n A 1 209 ASN 209 532 532 ASN ASN C . n A 1 210 LEU 210 533 533 LEU LEU C . n B 2 1 GLN 1 1 1 GLN GLN H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 VAL 5 5 5 VAL VAL H . n B 2 6 GLN 6 6 6 GLN GLN H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 PRO 9 9 9 PRO PRO H . n B 2 10 GLU 10 10 10 GLU GLU H . n B 2 11 VAL 11 11 11 VAL VAL H . n B 2 12 LYS 12 12 12 LYS LYS H . n B 2 13 LYS 13 13 13 LYS LYS H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 THR 16 16 16 THR THR H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 VAL 18 18 18 VAL VAL H . n B 2 19 LYS 19 19 19 LYS LYS H . n B 2 20 VAL 20 20 20 VAL VAL H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 LYS 23 23 23 LYS LYS H . n B 2 24 ALA 24 24 24 ALA ALA H . n B 2 25 PRO 25 25 25 PRO PRO H . n B 2 26 VAL 26 26 26 VAL VAL H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 THR 28 28 28 THR THR H . n B 2 29 PHE 29 29 29 PHE PHE H . n B 2 30 SER 30 30 30 SER SER H . n B 2 31 ILE 31 31 31 ILE ILE H . n B 2 32 SER 32 32 32 SER SER H . n B 2 33 ALA 33 33 33 ALA ALA H . n B 2 34 VAL 34 34 34 VAL VAL H . n B 2 35 GLN 35 35 35 GLN GLN H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 ARG 38 38 38 ARG ARG H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 ALA 40 40 40 ALA ALA H . n B 2 41 ARG 41 41 41 ARG ARG H . n B 2 42 GLY 42 42 42 GLY GLY H . n B 2 43 GLN 43 43 43 GLN GLN H . n B 2 44 ARG 44 44 44 ARG ARG H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 ILE 48 48 48 ILE ILE H . n B 2 49 GLY 49 49 49 GLY GLY H . n B 2 50 TRP 50 50 50 TRP TRP H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 VAL 52 52 52 VAL VAL H . n B 2 53 VAL 53 53 53 VAL VAL H . n B 2 54 GLY 54 54 54 GLY GLY H . n B 2 55 SER 55 55 55 SER SER H . n B 2 56 GLY 56 56 56 GLY GLY H . n B 2 57 ASN 57 57 57 ASN ASN H . n B 2 58 THR 58 58 58 THR THR H . n B 2 59 ASN 59 59 59 ASN ASN H . n B 2 60 TYR 60 60 60 TYR TYR H . n B 2 61 ALA 61 61 61 ALA ALA H . n B 2 62 GLN 62 62 62 GLN GLN H . n B 2 63 ASN 63 63 63 ASN ASN H . n B 2 64 PHE 64 64 64 PHE PHE H . n B 2 65 GLN 65 65 65 GLN GLN H . n B 2 66 GLU 66 66 66 GLU GLU H . n B 2 67 ARG 67 67 67 ARG ARG H . n B 2 68 VAL 68 68 68 VAL VAL H . n B 2 69 THR 69 69 69 THR THR H . n B 2 70 ILE 70 70 70 ILE ILE H . n B 2 71 THR 71 71 71 THR THR H . n B 2 72 THR 72 72 72 THR THR H . n B 2 73 ASP 73 73 73 ASP ASP H . n B 2 74 MET 74 74 74 MET MET H . n B 2 75 SER 75 75 75 SER SER H . n B 2 76 THR 76 76 76 THR THR H . n B 2 77 GLY 77 77 77 GLY GLY H . n B 2 78 THR 78 78 78 THR THR H . n B 2 79 VAL 79 79 79 VAL VAL H . n B 2 80 TYR 80 80 80 TYR TYR H . n B 2 81 MET 81 81 81 MET MET H . n B 2 82 GLU 82 82 82 GLU GLU H . n B 2 83 LEU 83 83 83 LEU LEU H . n B 2 84 SER 84 84 84 SER SER H . n B 2 85 GLY 85 85 85 GLY GLY H . n B 2 86 LEU 86 86 86 LEU LEU H . n B 2 87 ARG 87 87 87 ARG ARG H . n B 2 88 SER 88 88 88 SER SER H . n B 2 89 GLU 89 89 89 GLU GLU H . n B 2 90 ASP 90 90 90 ASP ASP H . n B 2 91 THR 91 91 91 THR THR H . n B 2 92 ALA 92 92 92 ALA ALA H . n B 2 93 MET 93 93 93 MET MET H . n B 2 94 TYR 94 94 94 TYR TYR H . n B 2 95 TYR 95 95 95 TYR TYR H . n B 2 96 CYS 96 96 96 CYS CYS H . n B 2 97 ALA 97 97 97 ALA ALA H . n B 2 98 ALA 98 98 98 ALA ALA H . n B 2 99 PRO 99 99 99 PRO PRO H . n B 2 100 TYR 100 100 100 TYR TYR H . n B 2 101 CYS 101 101 101 CYS CYS H . n B 2 102 ASN 102 102 102 ASN ASN H . n B 2 103 ARG 103 103 103 ARG ARG H . n B 2 104 THR 104 104 104 THR THR H . n B 2 105 THR 105 105 105 THR THR H . n B 2 106 CYS 106 106 106 CYS CYS H . n B 2 107 TYR 107 107 107 TYR TYR H . n B 2 108 ASP 108 108 108 ASP ASP H . n B 2 109 GLY 109 109 109 GLY GLY H . n B 2 110 PHE 110 110 110 PHE PHE H . n B 2 111 ASP 111 111 111 ASP ASP H . n B 2 112 LEU 112 112 112 LEU LEU H . n B 2 113 TRP 113 113 113 TRP TRP H . n B 2 114 GLY 114 114 114 GLY GLY H . n B 2 115 GLN 115 115 115 GLN GLN H . n B 2 116 GLY 116 116 116 GLY GLY H . n B 2 117 THR 117 117 117 THR THR H . n B 2 118 MET 118 118 118 MET MET H . n B 2 119 VAL 119 119 119 VAL VAL H . n B 2 120 THR 120 120 120 THR THR H . n B 2 121 VAL 121 121 121 VAL VAL H . n B 2 122 SER 122 122 122 SER SER H . n B 2 123 SER 123 123 123 SER SER H . n B 2 124 ALA 124 124 124 ALA ALA H . n B 2 125 SER 125 125 125 SER SER H . n B 2 126 THR 126 126 126 THR THR H . n B 2 127 LYS 127 127 127 LYS LYS H . n B 2 128 GLY 128 128 128 GLY GLY H . n B 2 129 PRO 129 129 129 PRO PRO H . n B 2 130 SER 130 130 130 SER SER H . n B 2 131 VAL 131 131 131 VAL VAL H . n B 2 132 PHE 132 132 132 PHE PHE H . n B 2 133 PRO 133 133 133 PRO PRO H . n B 2 134 LEU 134 134 134 LEU LEU H . n B 2 135 ALA 135 135 135 ALA ALA H . n B 2 136 PRO 136 136 136 PRO PRO H . n B 2 137 SER 137 137 137 SER SER H . n B 2 138 SER 138 138 138 SER SER H . n B 2 139 LYS 139 139 139 LYS LYS H . n B 2 140 SER 140 140 140 SER SER H . n B 2 141 THR 141 141 141 THR THR H . n B 2 142 SER 142 142 142 SER SER H . n B 2 143 GLY 143 143 143 GLY GLY H . n B 2 144 GLY 144 144 144 GLY GLY H . n B 2 145 THR 145 145 145 THR THR H . n B 2 146 ALA 146 146 146 ALA ALA H . n B 2 147 ALA 147 147 147 ALA ALA H . n B 2 148 LEU 148 148 148 LEU LEU H . n B 2 149 GLY 149 149 149 GLY GLY H . n B 2 150 CYS 150 150 150 CYS CYS H . n B 2 151 LEU 151 151 151 LEU LEU H . n B 2 152 VAL 152 152 152 VAL VAL H . n B 2 153 LYS 153 153 153 LYS LYS H . n B 2 154 ASP 154 154 154 ASP ASP H . n B 2 155 TYR 155 155 155 TYR TYR H . n B 2 156 PHE 156 156 156 PHE PHE H . n B 2 157 PRO 157 157 157 PRO PRO H . n B 2 158 GLU 158 158 158 GLU GLU H . n B 2 159 PRO 159 159 159 PRO PRO H . n B 2 160 VAL 160 160 160 VAL VAL H . n B 2 161 THR 161 161 161 THR THR H . n B 2 162 VAL 162 162 162 VAL VAL H . n B 2 163 SER 163 163 163 SER SER H . n B 2 164 TRP 164 164 164 TRP TRP H . n B 2 165 ASN 165 165 165 ASN ASN H . n B 2 166 SER 166 166 166 SER SER H . n B 2 167 GLY 167 167 167 GLY GLY H . n B 2 168 ALA 168 168 168 ALA ALA H . n B 2 169 LEU 169 169 169 LEU LEU H . n B 2 170 THR 170 170 170 THR THR H . n B 2 171 SER 171 171 171 SER SER H . n B 2 172 GLY 172 172 172 GLY GLY H . n B 2 173 VAL 173 173 173 VAL VAL H . n B 2 174 HIS 174 174 174 HIS HIS H . n B 2 175 THR 175 175 175 THR THR H . n B 2 176 PHE 176 176 176 PHE PHE H . n B 2 177 PRO 177 177 177 PRO PRO H . n B 2 178 ALA 178 178 178 ALA ALA H . n B 2 179 VAL 179 179 179 VAL VAL H . n B 2 180 LEU 180 180 180 LEU LEU H . n B 2 181 GLN 181 181 181 GLN GLN H . n B 2 182 SER 182 182 182 SER SER H . n B 2 183 SER 183 183 183 SER SER H . n B 2 184 GLY 184 184 184 GLY GLY H . n B 2 185 LEU 185 185 185 LEU LEU H . n B 2 186 TYR 186 186 186 TYR TYR H . n B 2 187 SER 187 187 187 SER SER H . n B 2 188 LEU 188 188 188 LEU LEU H . n B 2 189 SER 189 189 189 SER SER H . n B 2 190 SER 190 190 190 SER SER H . n B 2 191 VAL 191 191 191 VAL VAL H . n B 2 192 VAL 192 192 192 VAL VAL H . n B 2 193 THR 193 193 193 THR THR H . n B 2 194 VAL 194 194 194 VAL VAL H . n B 2 195 PRO 195 195 195 PRO PRO H . n B 2 196 SER 196 196 196 SER SER H . n B 2 197 SER 197 197 197 SER SER H . n B 2 198 SER 198 198 198 SER SER H . n B 2 199 LEU 199 199 199 LEU LEU H . n B 2 200 GLY 200 200 200 GLY GLY H . n B 2 201 THR 201 201 201 THR THR H . n B 2 202 GLN 202 202 202 GLN GLN H . n B 2 203 THR 203 203 203 THR THR H . n B 2 204 TYR 204 204 204 TYR TYR H . n B 2 205 ILE 205 205 205 ILE ILE H . n B 2 206 CYS 206 206 206 CYS CYS H . n B 2 207 ASN 207 207 207 ASN ASN H . n B 2 208 VAL 208 208 208 VAL VAL H . n B 2 209 ASN 209 209 209 ASN ASN H . n B 2 210 HIS 210 210 210 HIS HIS H . n B 2 211 LYS 211 211 211 LYS LYS H . n B 2 212 PRO 212 212 212 PRO PRO H . n B 2 213 SER 213 213 213 SER SER H . n B 2 214 ASN 214 214 214 ASN ASN H . n B 2 215 THR 215 215 215 THR THR H . n B 2 216 LYS 216 216 216 LYS LYS H . n B 2 217 VAL 217 217 217 VAL VAL H . n B 2 218 ASP 218 218 218 ASP ASP H . n B 2 219 LYS 219 219 219 LYS LYS H . n B 2 220 ARG 220 220 220 ARG ARG H . n B 2 221 VAL 221 221 221 VAL VAL H . n B 2 222 GLU 222 222 222 GLU GLU H . n B 2 223 PRO 223 223 223 PRO PRO H . n B 2 224 LYS 224 224 224 LYS LYS H . n B 2 225 SER 225 225 225 SER SER H . n B 2 226 CYS 226 226 226 CYS CYS H . n C 3 1 GLU 1 1 1 GLU GLU L . n C 3 2 ILE 2 2 2 ILE ILE L . n C 3 3 VAL 3 3 3 VAL VAL L . n C 3 4 LEU 4 4 4 LEU LEU L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 SER 7 7 7 SER SER L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 GLY 9 9 9 GLY GLY L . n C 3 10 THR 10 10 10 THR THR L . n C 3 11 LEU 11 11 11 LEU LEU L . n C 3 12 SER 12 12 12 SER SER L . n C 3 13 LEU 13 13 13 LEU LEU L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 PRO 15 15 15 PRO PRO L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 GLU 17 17 17 GLU GLU L . n C 3 18 ARG 18 18 18 ARG ARG L . n C 3 19 ALA 19 19 19 ALA ALA L . n C 3 20 THR 20 20 20 THR THR L . n C 3 21 LEU 21 21 21 LEU LEU L . n C 3 22 SER 22 22 22 SER SER L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 ARG 24 24 24 ARG ARG L . n C 3 25 ALA 25 25 25 ALA ALA L . n C 3 26 SER 26 26 26 SER SER L . n C 3 27 GLN 27 27 27 GLN GLN L . n C 3 28 SER 28 28 28 SER SER L . n C 3 29 ILE 29 29 29 ILE ILE L . n C 3 30 SER 30 30 30 SER SER L . n C 3 31 SER 31 31 31 SER SER L . n C 3 32 ASN 32 32 32 ASN ASN L . n C 3 33 TYR 33 33 33 TYR TYR L . n C 3 34 LEU 34 34 34 LEU LEU L . n C 3 35 ALA 35 35 35 ALA ALA L . n C 3 36 TRP 36 36 36 TRP TRP L . n C 3 37 TYR 37 37 37 TYR TYR L . n C 3 38 GLN 38 38 38 GLN GLN L . n C 3 39 GLN 39 39 39 GLN GLN L . n C 3 40 LYS 40 40 40 LYS LYS L . n C 3 41 PRO 41 41 41 PRO PRO L . n C 3 42 GLY 42 42 42 GLY GLY L . n C 3 43 GLN 43 43 43 GLN GLN L . n C 3 44 ALA 44 44 44 ALA ALA L . n C 3 45 PRO 45 45 45 PRO PRO L . n C 3 46 ARG 46 46 46 ARG ARG L . n C 3 47 LEU 47 47 47 LEU LEU L . n C 3 48 LEU 48 48 48 LEU LEU L . n C 3 49 ILE 49 49 49 ILE ILE L . n C 3 50 TYR 50 50 50 TYR TYR L . n C 3 51 GLY 51 51 51 GLY GLY L . n C 3 52 ALA 52 52 52 ALA ALA L . n C 3 53 SER 53 53 53 SER SER L . n C 3 54 SER 54 54 54 SER SER L . n C 3 55 ARG 55 55 55 ARG ARG L . n C 3 56 ALA 56 56 56 ALA ALA L . n C 3 57 THR 57 57 57 THR THR L . n C 3 58 GLY 58 58 58 GLY GLY L . n C 3 59 ILE 59 59 59 ILE ILE L . n C 3 60 PRO 60 60 60 PRO PRO L . n C 3 61 ASP 61 61 61 ASP ASP L . n C 3 62 ARG 62 62 62 ARG ARG L . n C 3 63 PHE 63 63 63 PHE PHE L . n C 3 64 SER 64 64 64 SER SER L . n C 3 65 GLY 65 65 65 GLY GLY L . n C 3 66 SER 66 66 66 SER SER L . n C 3 67 GLY 67 67 67 GLY GLY L . n C 3 68 SER 68 68 68 SER SER L . n C 3 69 GLY 69 69 69 GLY GLY L . n C 3 70 THR 70 70 70 THR THR L . n C 3 71 ASP 71 71 71 ASP ASP L . n C 3 72 PHE 72 72 72 PHE PHE L . n C 3 73 THR 73 73 73 THR THR L . n C 3 74 LEU 74 74 74 LEU LEU L . n C 3 75 SER 75 75 75 SER SER L . n C 3 76 ILE 76 76 76 ILE ILE L . n C 3 77 ASN 77 77 77 ASN ASN L . n C 3 78 ARG 78 78 78 ARG ARG L . n C 3 79 LEU 79 79 79 LEU LEU L . n C 3 80 GLU 80 80 80 GLU GLU L . n C 3 81 PRO 81 81 81 PRO PRO L . n C 3 82 GLU 82 82 82 GLU GLU L . n C 3 83 ASP 83 83 83 ASP ASP L . n C 3 84 PHE 84 84 84 PHE PHE L . n C 3 85 ALA 85 85 85 ALA ALA L . n C 3 86 MET 86 86 86 MET MET L . n C 3 87 TYR 87 87 87 TYR TYR L . n C 3 88 TYR 88 88 88 TYR TYR L . n C 3 89 CYS 89 89 89 CYS CYS L . n C 3 90 GLN 90 90 90 GLN GLN L . n C 3 91 HIS 91 91 91 HIS HIS L . n C 3 92 TYR 92 92 92 TYR TYR L . n C 3 93 GLY 93 93 93 GLY GLY L . n C 3 94 GLY 94 94 94 GLY GLY L . n C 3 95 LEU 95 95 95 LEU LEU L . n C 3 96 SER 96 96 96 SER SER L . n C 3 97 ARG 97 97 97 ARG ARG L . n C 3 98 TRP 98 98 98 TRP TRP L . n C 3 99 THR 99 99 99 THR THR L . n C 3 100 PHE 100 100 100 PHE PHE L . n C 3 101 GLY 101 101 101 GLY GLY L . n C 3 102 GLN 102 102 102 GLN GLN L . n C 3 103 GLY 103 103 103 GLY GLY L . n C 3 104 THR 104 104 104 THR THR L . n C 3 105 LYS 105 105 105 LYS LYS L . n C 3 106 VAL 106 106 106 VAL VAL L . n C 3 107 GLU 107 107 107 GLU GLU L . n C 3 108 ILE 108 108 108 ILE ILE L . n C 3 109 LYS 109 109 109 LYS LYS L . n C 3 110 ARG 110 110 110 ARG ARG L . n C 3 111 THR 111 111 111 THR THR L . n C 3 112 VAL 112 112 112 VAL VAL L . n C 3 113 ALA 113 113 113 ALA ALA L . n C 3 114 ALA 114 114 114 ALA ALA L . n C 3 115 PRO 115 115 115 PRO PRO L . n C 3 116 SER 116 116 116 SER SER L . n C 3 117 VAL 117 117 117 VAL VAL L . n C 3 118 PHE 118 118 118 PHE PHE L . n C 3 119 ILE 119 119 119 ILE ILE L . n C 3 120 PHE 120 120 120 PHE PHE L . n C 3 121 PRO 121 121 121 PRO PRO L . n C 3 122 PRO 122 122 122 PRO PRO L . n C 3 123 SER 123 123 123 SER SER L . n C 3 124 ASP 124 124 124 ASP ASP L . n C 3 125 GLU 125 125 125 GLU GLU L . n C 3 126 GLN 126 126 126 GLN GLN L . n C 3 127 LEU 127 127 127 LEU LEU L . n C 3 128 LYS 128 128 128 LYS LYS L . n C 3 129 SER 129 129 129 SER SER L . n C 3 130 GLY 130 130 130 GLY GLY L . n C 3 131 THR 131 131 131 THR THR L . n C 3 132 ALA 132 132 132 ALA ALA L . n C 3 133 SER 133 133 133 SER SER L . n C 3 134 VAL 134 134 134 VAL VAL L . n C 3 135 VAL 135 135 135 VAL VAL L . n C 3 136 CYS 136 136 136 CYS CYS L . n C 3 137 LEU 137 137 137 LEU LEU L . n C 3 138 LEU 138 138 138 LEU LEU L . n C 3 139 ASN 139 139 139 ASN ASN L . n C 3 140 ASN 140 140 140 ASN ASN L . n C 3 141 PHE 141 141 141 PHE PHE L . n C 3 142 TYR 142 142 142 TYR TYR L . n C 3 143 PRO 143 143 143 PRO PRO L . n C 3 144 ARG 144 144 144 ARG ARG L . n C 3 145 GLU 145 145 145 GLU GLU L . n C 3 146 ALA 146 146 146 ALA ALA L . n C 3 147 LYS 147 147 147 LYS LYS L . n C 3 148 VAL 148 148 148 VAL VAL L . n C 3 149 GLN 149 149 149 GLN GLN L . n C 3 150 TRP 150 150 150 TRP TRP L . n C 3 151 LYS 151 151 151 LYS LYS L . n C 3 152 VAL 152 152 152 VAL VAL L . n C 3 153 ASP 153 153 153 ASP ASP L . n C 3 154 ASN 154 154 154 ASN ASN L . n C 3 155 ALA 155 155 155 ALA ALA L . n C 3 156 LEU 156 156 156 LEU LEU L . n C 3 157 GLN 157 157 157 GLN GLN L . n C 3 158 SER 158 158 158 SER SER L . n C 3 159 GLY 159 159 159 GLY GLY L . n C 3 160 ASN 160 160 160 ASN ASN L . n C 3 161 SER 161 161 161 SER SER L . n C 3 162 GLN 162 162 162 GLN GLN L . n C 3 163 GLU 163 163 163 GLU GLU L . n C 3 164 SER 164 164 164 SER SER L . n C 3 165 VAL 165 165 165 VAL VAL L . n C 3 166 THR 166 166 166 THR THR L . n C 3 167 GLU 167 167 167 GLU GLU L . n C 3 168 GLN 168 168 168 GLN GLN L . n C 3 169 ASP 169 169 169 ASP ASP L . n C 3 170 SER 170 170 170 SER SER L . n C 3 171 LYS 171 171 171 LYS LYS L . n C 3 172 ASP 172 172 172 ASP ASP L . n C 3 173 SER 173 173 173 SER SER L . n C 3 174 THR 174 174 174 THR THR L . n C 3 175 TYR 175 175 175 TYR TYR L . n C 3 176 SER 176 176 176 SER SER L . n C 3 177 LEU 177 177 177 LEU LEU L . n C 3 178 SER 178 178 178 SER SER L . n C 3 179 SER 179 179 179 SER SER L . n C 3 180 THR 180 180 180 THR THR L . n C 3 181 LEU 181 181 181 LEU LEU L . n C 3 182 THR 182 182 182 THR THR L . n C 3 183 LEU 183 183 183 LEU LEU L . n C 3 184 SER 184 184 184 SER SER L . n C 3 185 LYS 185 185 185 LYS LYS L . n C 3 186 ALA 186 186 186 ALA ALA L . n C 3 187 ASP 187 187 187 ASP ASP L . n C 3 188 TYR 188 188 188 TYR TYR L . n C 3 189 GLU 189 189 189 GLU GLU L . n C 3 190 LYS 190 190 190 LYS LYS L . n C 3 191 HIS 191 191 191 HIS HIS L . n C 3 192 LYS 192 192 192 LYS LYS L . n C 3 193 VAL 193 193 193 VAL VAL L . n C 3 194 TYR 194 194 194 TYR TYR L . n C 3 195 ALA 195 195 195 ALA ALA L . n C 3 196 CYS 196 196 196 CYS CYS L . n C 3 197 GLU 197 197 197 GLU GLU L . n C 3 198 VAL 198 198 198 VAL VAL L . n C 3 199 THR 199 199 199 THR THR L . n C 3 200 HIS 200 200 200 HIS HIS L . n C 3 201 GLN 201 201 201 GLN GLN L . n C 3 202 GLY 202 202 202 GLY GLY L . n C 3 203 LEU 203 203 203 LEU LEU L . n C 3 204 SER 204 204 204 SER SER L . n C 3 205 SER 205 205 205 SER SER L . n C 3 206 PRO 206 206 206 PRO PRO L . n C 3 207 VAL 207 207 207 VAL VAL L . n C 3 208 THR 208 208 208 THR THR L . n C 3 209 LYS 209 209 209 LYS LYS L . n C 3 210 SER 210 210 210 SER SER L . n C 3 211 PHE 211 211 211 PHE PHE L . n C 3 212 ASN 212 212 212 ASN ASN L . n C 3 213 ARG 213 213 213 ARG ARG L . n C 3 214 GLY 214 214 214 GLY GLY L . n C 3 215 GLU 215 215 215 GLU GLU L . n C 3 216 CYS 216 216 216 CYS CYS L . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 A NAG 1 H NAG 1001 n D 4 NAG 2 A NAG 2 H NAG 1002 n E 4 NAG 1 B NAG 1 H NAG 1003 n E 4 NAG 2 B NAG 2 H NAG 1004 n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8C89 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8C89 _struct.title 'SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8C89 _struct_keywords.text 'Complex SARS-CoV-2 Spike S 17T2, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;ESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIR GDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGV EGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNL ; 324 2 PDB 8C89 8C89 ? 2 ? 1 3 PDB 8C89 8C89 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8C89 C 1 ? 210 ? P0DTC2 324 ? 533 ? 324 533 2 2 8C89 H 1 ? 226 ? 8C89 1 ? 226 ? 1 226 3 3 8C89 L 1 ? 216 ? 8C89 1 ? 216 ? 1 216 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8C89 ASP C 16 ? UNP P0DTC2 GLY 339 variant 339 1 1 8C89 LEU C 48 ? UNP P0DTC2 SER 371 variant 371 2 1 8C89 PRO C 50 ? UNP P0DTC2 SER 373 variant 373 3 1 8C89 PHE C 52 ? UNP P0DTC2 SER 375 variant 375 4 1 8C89 ASN C 94 ? UNP P0DTC2 LYS 417 variant 417 5 1 8C89 LYS C 117 ? UNP P0DTC2 ASN 440 variant 440 6 1 8C89 SER C 123 ? UNP P0DTC2 GLY 446 variant 446 7 1 8C89 ASN C 154 ? UNP P0DTC2 SER 477 variant 477 8 1 8C89 LYS C 155 ? UNP P0DTC2 THR 478 variant 478 9 1 8C89 ALA C 161 ? UNP P0DTC2 GLU 484 variant 484 10 1 8C89 ARG C 170 ? UNP P0DTC2 GLN 493 variant 493 11 1 8C89 SER C 173 ? UNP P0DTC2 GLY 496 variant 496 12 1 8C89 ARG C 175 ? UNP P0DTC2 GLN 498 variant 498 13 1 8C89 TYR C 178 ? UNP P0DTC2 ASN 501 variant 501 14 1 8C89 HIS C 182 ? UNP P0DTC2 TYR 505 variant 505 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6330 ? 1 MORE -21 ? 1 'SSA (A^2)' 30880 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 15 ? ASN A 20 ? PHE C 338 ASN C 343 1 ? 6 HELX_P HELX_P2 AA2 THR A 62 ? ASP A 66 ? THR C 385 ASP C 389 5 ? 5 HELX_P HELX_P3 AA3 ARG A 80 ? ILE A 87 ? ARG C 403 ILE C 410 5 ? 8 HELX_P HELX_P4 AA4 ASN A 94 ? ASN A 99 ? ASN C 417 ASN C 422 1 ? 6 HELX_P HELX_P5 AA5 ARG B 87 ? THR B 91 ? ARG H 87 THR H 91 5 ? 5 HELX_P HELX_P6 AA6 SER B 137 ? GLY B 143 ? SER H 137 GLY H 143 5 ? 7 HELX_P HELX_P7 AA7 SER B 197 ? LEU B 199 ? SER H 197 LEU H 199 5 ? 3 HELX_P HELX_P8 AA8 GLU C 80 ? PHE C 84 ? GLU L 80 PHE L 84 5 ? 5 HELX_P HELX_P9 AA9 SER C 123 ? SER C 129 ? SER L 123 SER L 129 1 ? 7 HELX_P HELX_P10 AB1 LYS C 185 ? HIS C 191 ? LYS L 185 HIS L 191 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 38 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 109 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf3 disulf ? ? A CYS 68 SG ? ? ? 1_555 A CYS 202 SG ? ? C CYS 391 C CYS 525 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf4 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 165 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf6 disulf ? ? B CYS 101 SG ? ? ? 1_555 B CYS 106 SG ? ? H CYS 101 H CYS 106 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf7 disulf ? ? B CYS 150 SG ? ? ? 1_555 B CYS 206 SG ? ? H CYS 150 H CYS 206 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf8 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 89 SG ? ? L CYS 23 L CYS 89 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf9 disulf ? ? C CYS 136 SG ? ? ? 1_555 C CYS 196 SG ? ? L CYS 136 L CYS 196 1_555 ? ? ? ? ? ? ? 2.040 ? ? covale1 covale one ? A ASN 20 ND2 ? ? ? 1_555 D NAG . C1 ? ? C ASN 343 A NAG 1 1_555 ? ? ? ? ? ? ? 1.456 ? N-Glycosylation covale2 covale one ? B ASN 102 ND2 ? ? ? 1_555 E NAG . C1 ? ? H ASN 102 B NAG 1 1_555 ? ? ? ? ? ? ? 1.422 ? N-Glycosylation covale3 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale4 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 123 B . ? SER 123 H ALA 124 B ? ALA 124 H 1 4.12 2 PHE 156 B . ? PHE 156 H PRO 157 B ? PRO 157 H 1 -9.94 3 TYR 142 C . ? TYR 142 L PRO 143 C ? PRO 143 L 1 -0.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 3 ? AA5 ? 5 ? AA6 ? 4 ? AA7 ? 3 ? AA8 ? 4 ? AA9 ? 3 ? AB1 ? 2 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 4 ? AB5 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AB1 1 2 ? parallel AB2 1 2 ? anti-parallel AB2 2 3 ? anti-parallel AB3 1 2 ? anti-parallel AB3 2 3 ? anti-parallel AB4 1 2 ? anti-parallel AB4 2 3 ? anti-parallel AB4 3 4 ? anti-parallel AB5 1 2 ? anti-parallel AB5 2 3 ? anti-parallel AB5 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 33 ? ARG A 34 ? LYS C 356 ARG C 357 AA1 2 TYR A 73 ? ILE A 79 ? TYR C 396 ILE C 402 AA1 3 TYR A 185 ? SER A 191 ? TYR C 508 SER C 514 AA1 4 CYS A 109 ? ASN A 114 ? CYS C 432 ASN C 437 AA1 5 PHE A 52 ? CYS A 56 ? PHE C 375 CYS C 379 AA2 1 CYS A 38 ? VAL A 39 ? CYS C 361 VAL C 362 AA2 2 VAL A 201 ? CYS A 202 ? VAL C 524 CYS C 525 AA3 1 LEU A 129 ? ARG A 131 ? LEU C 452 ARG C 454 AA3 2 LEU A 169 ? SER A 171 ? LEU C 492 SER C 494 AA4 1 VAL B 5 ? GLN B 6 ? VAL H 5 GLN H 6 AA4 2 CYS B 22 ? LYS B 23 ? CYS H 22 LYS H 23 AA4 3 THR B 78 ? VAL B 79 ? THR H 78 VAL H 79 AA5 1 GLU B 10 ? VAL B 11 ? GLU H 10 VAL H 11 AA5 2 THR B 117 ? THR B 120 ? THR H 117 THR H 120 AA5 3 ALA B 92 ? ALA B 98 ? ALA H 92 ALA H 98 AA5 4 ALA B 33 ? GLN B 39 ? ALA H 33 GLN H 39 AA5 5 ILE B 51 ? VAL B 52 ? ILE H 51 VAL H 52 AA6 1 GLU B 46 ? TRP B 47 ? GLU H 46 TRP H 47 AA6 2 ALA B 33 ? GLN B 39 ? ALA H 33 GLN H 39 AA6 3 ALA B 92 ? ALA B 98 ? ALA H 92 ALA H 98 AA6 4 LEU B 112 ? TRP B 113 ? LEU H 112 TRP H 113 AA7 1 VAL B 18 ? LYS B 19 ? VAL H 18 LYS H 19 AA7 2 GLU B 82 ? LEU B 83 ? GLU H 82 LEU H 83 AA7 3 VAL B 68 ? THR B 69 ? VAL H 68 THR H 69 AA8 1 SER B 130 ? LEU B 134 ? SER H 130 LEU H 134 AA8 2 THR B 145 ? TYR B 155 ? THR H 145 TYR H 155 AA8 3 TYR B 186 ? PRO B 195 ? TYR H 186 PRO H 195 AA8 4 VAL B 173 ? THR B 175 ? VAL H 173 THR H 175 AA9 1 THR B 161 ? TRP B 164 ? THR H 161 TRP H 164 AA9 2 ILE B 205 ? HIS B 210 ? ILE H 205 HIS H 210 AA9 3 THR B 215 ? ARG B 220 ? THR H 215 ARG H 220 AB1 1 LEU C 11 ? LEU C 13 ? LEU L 11 LEU L 13 AB1 2 VAL C 106 ? ILE C 108 ? VAL L 106 ILE L 108 AB2 1 ALA C 19 ? SER C 22 ? ALA L 19 SER L 22 AB2 2 ASP C 71 ? ILE C 76 ? ASP L 71 ILE L 76 AB2 3 GLY C 67 ? SER C 68 ? GLY L 67 SER L 68 AB3 1 ARG C 46 ? LEU C 47 ? ARG L 46 LEU L 47 AB3 2 LEU C 34 ? GLN C 39 ? LEU L 34 GLN L 39 AB3 3 MET C 86 ? HIS C 91 ? MET L 86 HIS L 91 AB4 1 PHE C 118 ? PHE C 120 ? PHE L 118 PHE L 120 AB4 2 THR C 131 ? PHE C 141 ? THR L 131 PHE L 141 AB4 3 TYR C 175 ? SER C 184 ? TYR L 175 SER L 184 AB4 4 GLN C 162 ? THR C 166 ? GLN L 162 THR L 166 AB5 1 ALA C 155 ? GLN C 157 ? ALA L 155 GLN L 157 AB5 2 LYS C 147 ? VAL C 152 ? LYS L 147 VAL L 152 AB5 3 VAL C 193 ? HIS C 200 ? VAL L 193 HIS L 200 AB5 4 LEU C 203 ? ASN C 212 ? LEU L 203 ASN L 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 33 ? N LYS C 356 O ALA A 74 ? O ALA C 397 AA1 2 3 N TYR A 73 ? N TYR C 396 O SER A 191 ? O SER C 514 AA1 3 4 O ARG A 186 ? O ARG C 509 N TRP A 113 ? N TRP C 436 AA1 4 5 O VAL A 110 ? O VAL C 433 N LYS A 55 ? N LYS C 378 AA2 1 2 N CYS A 38 ? N CYS C 361 O CYS A 202 ? O CYS C 525 AA3 1 2 N TYR A 130 ? N TYR C 453 O ARG A 170 ? O ARG C 493 AA4 1 2 N VAL B 5 ? N VAL H 5 O LYS B 23 ? O LYS H 23 AA4 2 3 N CYS B 22 ? N CYS H 22 O VAL B 79 ? O VAL H 79 AA5 1 2 N GLU B 10 ? N GLU H 10 O THR B 120 ? O THR H 120 AA5 2 3 O THR B 117 ? O THR H 117 N TYR B 94 ? N TYR H 94 AA5 3 4 O MET B 93 ? O MET H 93 N GLN B 39 ? N GLN H 39 AA5 4 5 N VAL B 34 ? N VAL H 34 O ILE B 51 ? O ILE H 51 AA6 1 2 O GLU B 46 ? O GLU H 46 N ARG B 38 ? N ARG H 38 AA6 2 3 N GLN B 39 ? N GLN H 39 O MET B 93 ? O MET H 93 AA6 3 4 N ALA B 98 ? N ALA H 98 O LEU B 112 ? O LEU H 112 AA7 1 2 N VAL B 18 ? N VAL H 18 O LEU B 83 ? O LEU H 83 AA7 2 3 O GLU B 82 ? O GLU H 82 N THR B 69 ? N THR H 69 AA8 1 2 N LEU B 134 ? N LEU H 134 O GLY B 149 ? O GLY H 149 AA8 2 3 N VAL B 152 ? N VAL H 152 O LEU B 188 ? O LEU H 188 AA8 3 4 O VAL B 191 ? O VAL H 191 N HIS B 174 ? N HIS H 174 AA9 1 2 N SER B 163 ? N SER H 163 O ASN B 207 ? O ASN H 207 AA9 2 3 N CYS B 206 ? N CYS H 206 O LYS B 219 ? O LYS H 219 AB1 1 2 N LEU C 11 ? N LEU L 11 O GLU C 107 ? O GLU L 107 AB2 1 2 N LEU C 21 ? N LEU L 21 O LEU C 74 ? O LEU L 74 AB2 2 3 O ASP C 71 ? O ASP L 71 N SER C 68 ? N SER L 68 AB3 1 2 O ARG C 46 ? O ARG L 46 N GLN C 38 ? N GLN L 38 AB3 2 3 N TYR C 37 ? N TYR L 37 O TYR C 88 ? O TYR L 88 AB4 1 2 N PHE C 118 ? N PHE L 118 O LEU C 137 ? O LEU L 137 AB4 2 3 N LEU C 138 ? N LEU L 138 O LEU C 177 ? O LEU L 177 AB4 3 4 O SER C 176 ? O SER L 176 N THR C 166 ? N THR L 166 AB5 1 2 O ALA C 155 ? O ALA L 155 N VAL C 152 ? N VAL L 152 AB5 2 3 N GLN C 149 ? N GLN L 149 O GLU C 197 ? O GLU L 197 AB5 3 4 N VAL C 198 ? N VAL L 198 O VAL C 207 ? O VAL L 207 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 H _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 17 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE1 _pdbx_validate_close_contact.auth_asym_id_2 H _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 82 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG L ARG 110 ? ? CD L ARG 110 ? ? NE L ARG 110 ? ? 124.85 111.80 13.05 2.10 N 2 1 NE L ARG 110 ? ? CZ L ARG 110 ? ? NH1 L ARG 110 ? ? 123.53 120.30 3.23 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR C 333 ? ? 65.69 -123.24 2 1 ALA C 352 ? ? -127.23 -168.62 3 1 CYS C 361 ? ? -171.81 -175.66 4 1 ASP C 364 ? ? -84.71 30.31 5 1 ASN C 439 ? ? 59.01 -100.05 6 1 PHE C 456 ? ? -177.29 -176.39 7 1 ASN C 481 ? ? 67.06 -76.25 8 1 GLN H 35 ? ? -170.93 -179.40 9 1 LEU H 45 ? ? -69.63 93.77 10 1 GLN H 62 ? ? 47.97 20.74 11 1 THR H 126 ? ? -22.11 122.59 12 1 PRO H 157 ? ? -81.86 -146.73 13 1 GLU H 158 ? ? -47.76 163.66 14 1 PRO H 177 ? ? -64.22 -174.29 15 1 SER H 182 ? ? 66.03 132.73 16 1 PRO L 8 ? ? -62.47 80.20 17 1 ALA L 52 ? ? 53.59 -128.78 18 1 SER L 53 ? ? -66.97 -70.22 19 1 SER L 54 ? ? 39.57 65.53 20 1 ASP L 61 ? ? -58.55 -4.73 21 1 ASN L 140 ? ? 37.74 53.38 22 1 ASN L 160 ? ? -91.71 51.59 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 VAL H 34 ? ? GLN H 35 ? ? 141.04 2 1 CYS H 101 ? ? ASN H 102 ? ? 142.12 3 1 GLU H 158 ? ? PRO H 159 ? ? -146.25 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id L _pdbx_validate_planes.auth_seq_id 110 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.097 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_entry_details.entry_id 8C89 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8C89 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8C89 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.41 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 124570 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.6 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 RECOMBINANT COMPLEX 'SARS-CoV-2 Omicron Variant Spike Trimer in complex with three 17T2 Fabs' ? ? ? '1, 2, 3' 2 1 RECOMBINANT COMPLEX 'Spike glycoprotein RBD' ? ? ? 1 3 1 RECOMBINANT COMPLEX '17T2 Fab' ? ? ? '2, 3' # _em_imaging.entry_id 8C89 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS TALOS F200C' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8C89 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8C89 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 2 2 2901879 'Severe acute respiratory syndrome coronavirus' ? ? ? ? ? ? ? 3 3 9606 'Homo sapiens' ? ? ? ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain HEK293 2 2 9606 'Homo sapiens' ? ? Expi293 3 3 9606 'Homo sapiens' ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 32 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Other private' ? ? 1 'Generalitat de Catalunya' Spain ? 2 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 8C89 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_