HEADER TRANSFERASE 19-JAN-23 8C8C TITLE CRYSTAL STRUCTURE OF PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE TYPE-2 TITLE 2 ALPHA (PI5P4KA) BOUND TO AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE TYPE-2 ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1-PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE 2-ALPHA, COMPND 5 DIPHOSPHOINOSITIDE KINASE 2-ALPHA,PIP5KIII,PHOSPHATIDYLINOSITOL 5- COMPND 6 PHOSPHATE 4-KINASE,PI5P4KALPHA,PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4- COMPND 7 KINASE TYPE II ALPHA,PI(5)P 4-KINASE TYPE II ALPHA,PIP4KII-ALPHA, COMPND 8 PTDINS(4)P-5-KINASE B ISOFORM,PTDINS(4)P-5-KINASE C ISOFORM, COMPND 9 PTDINS(5)P-4-KINASE ISOFORM 2-ALPHA; COMPND 10 EC: 2.7.1.149; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIP4K2A, PI5P4KA, PIP5K2, PIP5K2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, ATP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.P.D.HARBORNE,T.D.HOWARD,D.T.OGG REVDAT 2 07-JUN-23 8C8C 1 JRNL REVDAT 1 26-APR-23 8C8C 0 JRNL AUTH H.M.G.WILLEMS,S.EDWARDS,H.K.BOFFEY,S.J.CHAWNER,C.GREEN, JRNL AUTH 2 T.ROMERO,D.WINPENNY,J.SKIDMORE,J.H.CLARKE,S.P.ANDREWS JRNL TITL IDENTIFICATION OF ARUK2002821 AS AN ISOFORM-SELECTIVE PI5P4K JRNL TITL 2 ALPHA INHIBITOR. JRNL REF RSC MED CHEM V. 14 934 2023 JRNL REFN ESSN 2632-8682 JRNL PMID 37252102 JRNL DOI 10.1039/D3MD00039G REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 19422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.948 REMARK 3 FREE R VALUE TEST SET COUNT : 961 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96400 REMARK 3 B22 (A**2) : -0.16100 REMARK 3 B33 (A**2) : -0.80300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2516 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2352 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3404 ; 1.461 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5406 ; 0.487 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ; 7.462 ; 5.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 435 ;15.452 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2888 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 584 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 545 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 67 ; 0.134 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1257 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1188 ; 3.406 ; 3.942 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1188 ; 3.406 ; 3.943 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1478 ; 4.848 ; 7.057 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1479 ; 4.847 ; 7.056 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 4.052 ; 4.220 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1328 ; 4.051 ; 4.219 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1926 ; 6.032 ; 7.607 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1927 ; 6.030 ; 7.606 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2046 20.8038 15.8287 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.0529 REMARK 3 T33: 0.0944 T12: 0.0111 REMARK 3 T13: 0.0216 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.4502 L22: 0.7699 REMARK 3 L33: 2.3938 L12: -0.5396 REMARK 3 L13: 1.3814 L23: -0.5949 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: -0.2362 S13: 0.0423 REMARK 3 S21: 0.1177 S22: 0.0872 S23: 0.1432 REMARK 3 S31: -0.0700 S32: -0.3093 S33: -0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8C8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.096 REMARK 200 RESOLUTION RANGE LOW (A) : 42.504 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24 % PEG SMEAR LOW 0.04 M CACL 0.04 M REMARK 280 NAFORMATE 0.1 M TRIS PH PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.17300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.17300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.33050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.46750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.33050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.46750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.17300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.33050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.46750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.17300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.33050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.46750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.66100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.17300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 SER A 126 REMARK 465 GLN A 127 REMARK 465 ALA A 128 REMARK 465 ARG A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 ALA A 132 REMARK 465 THR A 216 REMARK 465 VAL A 217 REMARK 465 ALA A 218 REMARK 465 ARG A 219 REMARK 465 GLU A 220 REMARK 465 ALA A 221 REMARK 465 SER A 222 REMARK 465 ASP A 223 REMARK 465 LYS A 224 REMARK 465 GLU A 225 REMARK 465 LYS A 226 REMARK 465 ALA A 227 REMARK 465 GLU A 289 REMARK 465 GLU A 290 REMARK 465 VAL A 291 REMARK 465 GLU A 292 REMARK 465 CYS A 293 REMARK 465 GLU A 294 REMARK 465 GLU A 295 REMARK 465 ASN A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 GLU A 301 REMARK 465 GLY A 302 REMARK 465 GLU A 303 REMARK 465 SER A 304 REMARK 465 ASP A 305 REMARK 465 GLY A 306 REMARK 465 THR A 307 REMARK 465 HIS A 308 REMARK 465 PRO A 309 REMARK 465 VAL A 310 REMARK 465 GLY A 311 REMARK 465 THR A 312 REMARK 465 PRO A 313 REMARK 465 PRO A 314 REMARK 465 ASP A 315 REMARK 465 SER A 316 REMARK 465 PRO A 317 REMARK 465 GLY A 318 REMARK 465 ASN A 319 REMARK 465 THR A 320 REMARK 465 LEU A 321 REMARK 465 ASN A 322 REMARK 465 SER A 323 REMARK 465 SER A 324 REMARK 465 PRO A 325 REMARK 465 PRO A 326 REMARK 465 LYS A 369 REMARK 465 ALA A 370 REMARK 465 ALA A 371 REMARK 465 HIS A 372 REMARK 465 ALA A 373 REMARK 465 ALA A 374 REMARK 465 LYS A 375 REMARK 465 THR A 376 REMARK 465 VAL A 377 REMARK 465 LYS A 378 REMARK 465 HIS A 379 REMARK 465 GLY A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 ALA A 383 REMARK 465 GLU A 384 REMARK 465 ILE A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 LEU A 327 CG CD1 CD2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 LYS A 395 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 30.25 70.54 REMARK 500 ASP A 187 -146.97 67.77 REMARK 500 ARG A 203 -48.54 -130.86 REMARK 500 ASP A 359 70.45 73.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 725 DISTANCE = 5.96 ANGSTROMS DBREF 8C8C A 33 406 UNP P48426 PI42A_HUMAN 33 406 SEQADV 8C8C GLY A 32 UNP P48426 EXPRESSION TAG SEQRES 1 A 375 GLY ALA SER ASP PRO LEU LEU SER VAL LEU MET TRP GLY SEQRES 2 A 375 VAL ASN HIS SER ILE ASN GLU LEU SER HIS VAL GLN ILE SEQRES 3 A 375 PRO VAL MET LEU MET PRO ASP ASP PHE LYS ALA TYR SER SEQRES 4 A 375 LYS ILE LYS VAL ASP ASN HIS LEU PHE ASN LYS GLU ASN SEQRES 5 A 375 MET PRO SER HIS PHE LYS PHE LYS GLU TYR CYS PRO MET SEQRES 6 A 375 VAL PHE ARG ASN LEU ARG GLU ARG PHE GLY ILE ASP ASP SEQRES 7 A 375 GLN ASP PHE GLN ASN SER LEU THR ARG SER ALA PRO LEU SEQRES 8 A 375 PRO ASN ASP SER GLN ALA ARG SER GLY ALA ARG PHE HIS SEQRES 9 A 375 THR SER TYR ASP LYS ARG TYR ILE ILE LYS THR ILE THR SEQRES 10 A 375 SER GLU ASP VAL ALA GLU MET HIS ASN ILE LEU LYS LYS SEQRES 11 A 375 TYR HIS GLN TYR ILE VAL GLU CYS HIS GLY ILE THR LEU SEQRES 12 A 375 LEU PRO GLN PHE LEU GLY MET TYR ARG LEU ASN VAL ASP SEQRES 13 A 375 GLY VAL GLU ILE TYR VAL ILE VAL THR ARG ASN VAL PHE SEQRES 14 A 375 SER HIS ARG LEU SER VAL TYR ARG LYS TYR ASP LEU LYS SEQRES 15 A 375 GLY SER THR VAL ALA ARG GLU ALA SER ASP LYS GLU LYS SEQRES 16 A 375 ALA LYS GLU LEU PRO THR LEU LYS ASP ASN ASP PHE ILE SEQRES 17 A 375 ASN GLU GLY GLN LYS ILE TYR ILE ASP ASP ASN ASN LYS SEQRES 18 A 375 LYS VAL PHE LEU GLU LYS LEU LYS LYS ASP VAL GLU PHE SEQRES 19 A 375 LEU ALA GLN LEU LYS LEU MET ASP TYR SER LEU LEU VAL SEQRES 20 A 375 GLY ILE HIS ASP VAL GLU ARG ALA GLU GLN GLU GLU VAL SEQRES 21 A 375 GLU CYS GLU GLU ASN ASP GLY GLU GLU GLU GLY GLU SER SEQRES 22 A 375 ASP GLY THR HIS PRO VAL GLY THR PRO PRO ASP SER PRO SEQRES 23 A 375 GLY ASN THR LEU ASN SER SER PRO PRO LEU ALA PRO GLY SEQRES 24 A 375 GLU PHE ASP PRO ASN ILE ASP VAL TYR GLY ILE LYS CYS SEQRES 25 A 375 HIS GLU ASN SER PRO ARG LYS GLU VAL TYR PHE MET ALA SEQRES 26 A 375 ILE ILE ASP ILE LEU THR HIS TYR ASP ALA LYS LYS LYS SEQRES 27 A 375 ALA ALA HIS ALA ALA LYS THR VAL LYS HIS GLY ALA GLY SEQRES 28 A 375 ALA GLU ILE SER THR VAL ASN PRO GLU GLN TYR SER LYS SEQRES 29 A 375 ARG PHE LEU ASP PHE ILE GLY HIS ILE LEU THR HET U1U A 501 27 HETNAM U1U ~{N}-(3-CHLORANYL-4-METHOXY-PHENYL)-7-(3,4- HETNAM 2 U1U DIMETHYLPHENYL)PYRROLO[2,3-D]PYRIMIDIN-4-AMINE FORMUL 2 U1U C21 H19 CL N4 O FORMUL 3 HOH *125(H2 O) HELIX 1 AA1 ASP A 35 SER A 53 1 19 HELIX 2 AA2 MET A 62 LYS A 67 5 6 HELIX 3 AA3 CYS A 94 PHE A 105 1 12 HELIX 4 AA4 ASP A 108 ARG A 118 1 11 HELIX 5 AA5 THR A 148 CYS A 169 1 22 HELIX 6 AA6 LYS A 234 GLY A 242 1 9 HELIX 7 AA7 ASP A 248 LEU A 269 1 22 HELIX 8 AA8 ASP A 365 LYS A 367 5 3 HELIX 9 AA9 ASN A 389 LEU A 405 1 17 SHEET 1 AA1 6 TYR A 69 ASP A 75 0 SHEET 2 AA1 6 HIS A 87 TYR A 93 -1 O GLU A 92 N SER A 70 SHEET 3 AA1 6 PHE A 178 VAL A 186 -1 O MET A 181 N TYR A 93 SHEET 4 AA1 6 VAL A 189 ARG A 197 -1 O VAL A 195 N LEU A 179 SHEET 5 AA1 6 TYR A 142 ILE A 147 -1 N ILE A 147 O TYR A 192 SHEET 6 AA1 6 HIS A 135 THR A 136 -1 N HIS A 135 O ILE A 144 SHEET 1 AA2 4 ARG A 208 LEU A 212 0 SHEET 2 AA2 4 SER A 275 ASP A 282 -1 O VAL A 278 N TYR A 210 SHEET 3 AA2 4 GLU A 351 ILE A 358 -1 O VAL A 352 N HIS A 281 SHEET 4 AA2 4 GLY A 340 LYS A 342 -1 N ILE A 341 O TYR A 353 SHEET 1 AA3 2 LEU A 271 MET A 272 0 SHEET 2 AA3 2 THR A 362 HIS A 363 -1 O THR A 362 N MET A 272 CRYST1 70.661 84.935 128.346 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014152 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007791 0.00000