HEADER HYDROLASE 20-JAN-23 8C8I TITLE HUMAN DUTPASE IN COMPLEX WITH A POTENT PROTEINACEOUS INHIBITOR (STL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: DUTPASE,DUTP PYROPHOSPHATASE; COMPND 6 EC: 3.6.1.23; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ORF20; COMPND 10 CHAIN: D, E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 10 ORGANISM_TAXID: 1280; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, DUTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.K.KOHEGYI,K.NYIRI,B.G.VERTESSY REVDAT 1 01-MAY-24 8C8I 0 JRNL AUTH B.K.KOHEGYI,K.NYIRI,B.G.VERTESSY JRNL TITL HUMAN DUTPASE IN COMPLEX WITH A POTENT PROTEINACEOUS JRNL TITL 2 INHIBITOR (STL) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6900 - 5.4700 1.00 3094 160 0.2177 0.2683 REMARK 3 2 5.4700 - 4.3400 1.00 2940 158 0.1637 0.2108 REMARK 3 3 4.3400 - 3.7900 1.00 2963 134 0.1720 0.2444 REMARK 3 4 3.7900 - 3.4500 1.00 2888 163 0.2036 0.2605 REMARK 3 5 3.4500 - 3.2000 1.00 2900 150 0.2129 0.2885 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6255 REMARK 3 ANGLE : 0.694 8529 REMARK 3 CHIRALITY : 0.044 955 REMARK 3 PLANARITY : 0.005 1115 REMARK 3 DIHEDRAL : 4.871 922 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 20.1913 8.7573 11.2703 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.3196 REMARK 3 T33: 0.3405 T12: 0.0256 REMARK 3 T13: 0.0555 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.4925 L22: 1.5077 REMARK 3 L33: 2.2130 L12: -0.0003 REMARK 3 L13: 0.6088 L23: 0.6532 REMARK 3 S TENSOR REMARK 3 S11: 0.1700 S12: -0.0046 S13: 0.2239 REMARK 3 S21: -0.0018 S22: -0.0710 S23: -0.1787 REMARK 3 S31: 0.3061 S32: -0.1060 S33: -0.0668 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292128077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI111 WITH LN2 REMARK 200 CLOSED LOOP COOLING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15601 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 71.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.07700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, PH REMARK 280 5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.22500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 151 REMARK 465 THR C 151 REMARK 465 MET E 7 REMARK 465 MET F 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 42 OG REMARK 470 MET A 61 CE REMARK 470 GLU A 62 CD OE1 OE2 REMARK 470 LYS A 67 CD CE NZ REMARK 470 LYS A 91 CE NZ REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 125 CE NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ASP A 149 CG OD1 OD2 REMARK 470 ASP A 150 OD1 OD2 REMARK 470 MET B 24 CG SD CE REMARK 470 GLN B 25 CG CD OE1 NE2 REMARK 470 MET B 61 CE REMARK 470 LYS B 67 CE NZ REMARK 470 SER B 76 OG REMARK 470 LYS B 91 CE NZ REMARK 470 LYS B 118 CE NZ REMARK 470 GLU B 119 CD OE1 OE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 GLN B 146 CG CD OE1 NE2 REMARK 470 ASP B 150 CG OD1 OD2 REMARK 470 GLU C 33 CG CD OE1 OE2 REMARK 470 MET C 61 CE REMARK 470 LYS C 67 CE NZ REMARK 470 LYS C 91 CE NZ REMARK 470 LYS C 118 CG CD CE NZ REMARK 470 GLU C 119 CD OE1 OE2 REMARK 470 LYS C 124 CG CD CE NZ REMARK 470 LYS C 125 CG CD CE NZ REMARK 470 ASP C 149 CG OD1 OD2 REMARK 470 ASP C 150 OD1 OD2 REMARK 470 MET D 7 N CA CB CG SD CE REMARK 470 GLU D 9 CD OE1 OE2 REMARK 470 LEU D 10 CG CD1 CD2 REMARK 470 ILE D 18 CG1 CG2 CD1 REMARK 470 LYS D 19 CG CD CE NZ REMARK 470 LEU D 21 CG CD1 CD2 REMARK 470 ARG D 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 23 CG CD CE NZ REMARK 470 TYR D 24 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET D 25 CG SD CE REMARK 470 LYS D 26 CG CD CE NZ REMARK 470 LEU D 27 CG CD1 CD2 REMARK 470 THR D 28 OG1 CG2 REMARK 470 GLN D 29 CG CD OE1 NE2 REMARK 470 SER D 30 OG REMARK 470 LYS D 31 CG CD CE NZ REMARK 470 LEU D 32 CG CD1 CD2 REMARK 470 GLU D 34 CG CD OE1 OE2 REMARK 470 ARG D 35 CG CD NE CZ NH1 NH2 REMARK 470 THR D 36 OG1 CG2 REMARK 470 PHE D 38 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN D 40 CG CD OE1 NE2 REMARK 470 ASN D 41 CG OD1 ND2 REMARK 470 THR D 42 OG1 CG2 REMARK 470 SER D 44 OG REMARK 470 ASN D 45 CG OD1 ND2 REMARK 470 ASN D 48 CG OD1 ND2 REMARK 470 ASN D 50 CG OD1 ND2 REMARK 470 ARG D 51 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 52 CG OD1 ND2 REMARK 470 GLU D 57 CG CD OE1 OE2 REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 LEU D 65 CG CD1 CD2 REMARK 470 ILE D 67 CG1 CG2 CD1 REMARK 470 LYS D 80 CG CD CE NZ REMARK 470 GLU D 81 CG CD OE1 OE2 REMARK 470 LYS D 82 CG CD CE NZ REMARK 470 ASN D 89 CG OD1 ND2 REMARK 470 ASP D 90 CG OD1 OD2 REMARK 470 LYS D 93 CG CD CE NZ REMARK 470 LYS D 96 CG CD CE NZ REMARK 470 LYS D 103 CE NZ REMARK 470 SER D 114 OG REMARK 470 ASP D 117 CG OD1 OD2 REMARK 470 LYS D 124 CG CD CE NZ REMARK 470 LYS D 130 CG CD CE NZ REMARK 470 GLU D 131 CG CD OE1 OE2 REMARK 470 SER D 132 OG REMARK 470 LYS D 133 CG CD CE NZ REMARK 470 ILE D 134 CG1 CG2 CD1 REMARK 470 ASN D 135 CG OD1 ND2 REMARK 470 VAL D 136 CG1 CG2 REMARK 470 ASP D 138 CG OD1 OD2 REMARK 470 VAL D 144 CG1 CG2 REMARK 470 LYS D 146 CG CD CE NZ REMARK 470 LEU D 147 CG CD1 CD2 REMARK 470 LYS D 149 CG CD CE NZ REMARK 470 GLN D 150 CG CD OE1 NE2 REMARK 470 ILE D 151 CG1 CG2 CD1 REMARK 470 SER D 153 OG REMARK 470 ILE E 18 CG1 CG2 CD1 REMARK 470 LYS E 19 CG CD CE NZ REMARK 470 LYS E 23 CG CD CE NZ REMARK 470 LYS E 26 CG CD CE NZ REMARK 470 LEU E 27 CG CD1 CD2 REMARK 470 LYS E 31 CG CD CE NZ REMARK 470 SER E 39 OG REMARK 470 GLN E 40 CG CD OE1 NE2 REMARK 470 SER E 44 OG REMARK 470 ASN E 45 CG OD1 ND2 REMARK 470 GLU E 47 CG CD OE1 OE2 REMARK 470 ASN E 48 CG OD1 ND2 REMARK 470 ARG E 51 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 59 CG CD OE1 OE2 REMARK 470 LYS E 63 CG CD CE NZ REMARK 470 SER E 69 OG REMARK 470 LYS E 80 CG CD CE NZ REMARK 470 GLU E 81 CG CD OE1 OE2 REMARK 470 LYS E 82 CE NZ REMARK 470 ASP E 90 CG OD1 OD2 REMARK 470 LYS E 93 CG CD CE NZ REMARK 470 LYS E 96 CG CD CE NZ REMARK 470 LYS E 103 CE NZ REMARK 470 LYS E 124 CG CD CE NZ REMARK 470 GLU E 127 CG CD OE1 OE2 REMARK 470 LEU E 128 CG CD1 CD2 REMARK 470 LEU E 129 CG CD1 CD2 REMARK 470 LYS E 130 CG CD CE NZ REMARK 470 GLU E 131 CG CD OE1 OE2 REMARK 470 SER E 132 OG REMARK 470 LYS E 133 CG CD CE NZ REMARK 470 ASP E 138 CG OD1 OD2 REMARK 470 ILE E 139 CG1 CG2 CD1 REMARK 470 ASP E 142 CG OD1 OD2 REMARK 470 LYS E 146 CG CD CE NZ REMARK 470 GLN E 150 CG CD OE1 NE2 REMARK 470 GLU F 9 CG CD OE1 OE2 REMARK 470 LYS F 19 CG CD CE NZ REMARK 470 LYS F 23 CG CD CE NZ REMARK 470 LYS F 26 CE NZ REMARK 470 SER F 30 OG REMARK 470 LYS F 31 CG CD CE NZ REMARK 470 GLU F 34 CG CD OE1 OE2 REMARK 470 ARG F 51 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 63 CE NZ REMARK 470 LYS F 82 CE NZ REMARK 470 ASP F 90 CG OD1 OD2 REMARK 470 LYS F 124 CG CD CE NZ REMARK 470 LYS F 130 CG CD CE NZ REMARK 470 GLU F 131 CG CD OE1 OE2 REMARK 470 LYS F 133 CG CD CE NZ REMARK 470 ILE F 134 CG1 CG2 CD1 REMARK 470 ASN F 135 CG OD1 ND2 REMARK 470 ASN F 137 CG OD1 ND2 REMARK 470 ILE F 139 CG1 CG2 CD1 REMARK 470 LYS F 146 CG CD CE NZ REMARK 470 GLN F 150 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 44 OD1 ASP F 138 4555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 98 -124.37 52.77 REMARK 500 TYR A 139 74.39 -118.98 REMARK 500 ALA B 98 -125.45 52.60 REMARK 500 TYR B 139 72.53 -118.36 REMARK 500 ALA C 98 -126.82 53.57 REMARK 500 TYR C 139 73.31 -118.87 REMARK 500 THR D 36 74.72 -154.93 REMARK 500 GLU D 81 -66.16 -98.53 REMARK 500 ASP D 90 65.23 -101.53 REMARK 500 GLU E 81 -67.56 -97.37 REMARK 500 ASP E 90 65.27 -101.22 REMARK 500 GLU F 81 -67.39 -100.55 REMARK 500 ASP F 90 64.64 -101.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD2 REMARK 620 2 ASP C 95 OD2 109.8 REMARK 620 N 1 DBREF 8C8I A 24 151 UNP P33316 DUT_HUMAN 112 239 DBREF 8C8I B 24 151 UNP P33316 DUT_HUMAN 112 239 DBREF 8C8I C 24 151 UNP P33316 DUT_HUMAN 112 239 DBREF 8C8I D 7 153 UNP Q9F0J8 Q9F0J8_STAAU 7 153 DBREF 8C8I E 7 153 UNP Q9F0J8 Q9F0J8_STAAU 7 153 DBREF 8C8I F 7 153 UNP Q9F0J8 Q9F0J8_STAAU 7 153 SEQRES 1 A 128 MET GLN LEU ARG PHE ALA ARG LEU SER GLU HIS ALA THR SEQRES 2 A 128 ALA PRO THR ARG GLY SER ALA ARG ALA ALA GLY TYR ASP SEQRES 3 A 128 LEU TYR SER ALA TYR ASP TYR THR ILE PRO PRO MET GLU SEQRES 4 A 128 LYS ALA VAL VAL LYS THR ASP ILE GLN ILE ALA LEU PRO SEQRES 5 A 128 SER GLY CYS TYR GLY ARG VAL ALA PRO ARG SER GLY LEU SEQRES 6 A 128 ALA ALA LYS HIS PHE ILE ASP VAL GLY ALA GLY VAL ILE SEQRES 7 A 128 ASP GLU ASP TYR ARG GLY ASN VAL GLY VAL VAL LEU PHE SEQRES 8 A 128 ASN PHE GLY LYS GLU LYS PHE GLU VAL LYS LYS GLY ASP SEQRES 9 A 128 ARG ILE ALA GLN LEU ILE CYS GLU ARG ILE PHE TYR PRO SEQRES 10 A 128 GLU ILE GLU GLU VAL GLN ALA LEU ASP ASP THR SEQRES 1 B 128 MET GLN LEU ARG PHE ALA ARG LEU SER GLU HIS ALA THR SEQRES 2 B 128 ALA PRO THR ARG GLY SER ALA ARG ALA ALA GLY TYR ASP SEQRES 3 B 128 LEU TYR SER ALA TYR ASP TYR THR ILE PRO PRO MET GLU SEQRES 4 B 128 LYS ALA VAL VAL LYS THR ASP ILE GLN ILE ALA LEU PRO SEQRES 5 B 128 SER GLY CYS TYR GLY ARG VAL ALA PRO ARG SER GLY LEU SEQRES 6 B 128 ALA ALA LYS HIS PHE ILE ASP VAL GLY ALA GLY VAL ILE SEQRES 7 B 128 ASP GLU ASP TYR ARG GLY ASN VAL GLY VAL VAL LEU PHE SEQRES 8 B 128 ASN PHE GLY LYS GLU LYS PHE GLU VAL LYS LYS GLY ASP SEQRES 9 B 128 ARG ILE ALA GLN LEU ILE CYS GLU ARG ILE PHE TYR PRO SEQRES 10 B 128 GLU ILE GLU GLU VAL GLN ALA LEU ASP ASP THR SEQRES 1 C 128 MET GLN LEU ARG PHE ALA ARG LEU SER GLU HIS ALA THR SEQRES 2 C 128 ALA PRO THR ARG GLY SER ALA ARG ALA ALA GLY TYR ASP SEQRES 3 C 128 LEU TYR SER ALA TYR ASP TYR THR ILE PRO PRO MET GLU SEQRES 4 C 128 LYS ALA VAL VAL LYS THR ASP ILE GLN ILE ALA LEU PRO SEQRES 5 C 128 SER GLY CYS TYR GLY ARG VAL ALA PRO ARG SER GLY LEU SEQRES 6 C 128 ALA ALA LYS HIS PHE ILE ASP VAL GLY ALA GLY VAL ILE SEQRES 7 C 128 ASP GLU ASP TYR ARG GLY ASN VAL GLY VAL VAL LEU PHE SEQRES 8 C 128 ASN PHE GLY LYS GLU LYS PHE GLU VAL LYS LYS GLY ASP SEQRES 9 C 128 ARG ILE ALA GLN LEU ILE CYS GLU ARG ILE PHE TYR PRO SEQRES 10 C 128 GLU ILE GLU GLU VAL GLN ALA LEU ASP ASP THR SEQRES 1 D 147 MET ALA GLU LEU PRO THR HIS TYR GLY THR ILE ILE LYS SEQRES 2 D 147 THR LEU ARG LYS TYR MET LYS LEU THR GLN SER LYS LEU SEQRES 3 D 147 SER GLU ARG THR GLY PHE SER GLN ASN THR ILE SER ASN SEQRES 4 D 147 HIS GLU ASN GLY ASN ARG ASN ILE GLY VAL ASN GLU ILE SEQRES 5 D 147 GLU ILE TYR GLY LYS GLY LEU GLY ILE PRO SER TYR ILE SEQRES 6 D 147 LEU HIS ARG ILE SER ASP GLU PHE LYS GLU LYS GLY TYR SEQRES 7 D 147 SER PRO THR LEU ASN ASP PHE GLY LYS PHE ASP LYS MET SEQRES 8 D 147 TYR SER TYR VAL ASN LYS ALA TYR TYR ASN ASP GLY ASP SEQRES 9 D 147 ILE TYR TYR SER SER TYR ASP LEU TYR ASP GLU THR ILE SEQRES 10 D 147 LYS LEU LEU GLU LEU LEU LYS GLU SER LYS ILE ASN VAL SEQRES 11 D 147 ASN ASP ILE ASP TYR ASP TYR VAL LEU LYS LEU TYR LYS SEQRES 12 D 147 GLN ILE LEU SER SEQRES 1 E 147 MET ALA GLU LEU PRO THR HIS TYR GLY THR ILE ILE LYS SEQRES 2 E 147 THR LEU ARG LYS TYR MET LYS LEU THR GLN SER LYS LEU SEQRES 3 E 147 SER GLU ARG THR GLY PHE SER GLN ASN THR ILE SER ASN SEQRES 4 E 147 HIS GLU ASN GLY ASN ARG ASN ILE GLY VAL ASN GLU ILE SEQRES 5 E 147 GLU ILE TYR GLY LYS GLY LEU GLY ILE PRO SER TYR ILE SEQRES 6 E 147 LEU HIS ARG ILE SER ASP GLU PHE LYS GLU LYS GLY TYR SEQRES 7 E 147 SER PRO THR LEU ASN ASP PHE GLY LYS PHE ASP LYS MET SEQRES 8 E 147 TYR SER TYR VAL ASN LYS ALA TYR TYR ASN ASP GLY ASP SEQRES 9 E 147 ILE TYR TYR SER SER TYR ASP LEU TYR ASP GLU THR ILE SEQRES 10 E 147 LYS LEU LEU GLU LEU LEU LYS GLU SER LYS ILE ASN VAL SEQRES 11 E 147 ASN ASP ILE ASP TYR ASP TYR VAL LEU LYS LEU TYR LYS SEQRES 12 E 147 GLN ILE LEU SER SEQRES 1 F 147 MET ALA GLU LEU PRO THR HIS TYR GLY THR ILE ILE LYS SEQRES 2 F 147 THR LEU ARG LYS TYR MET LYS LEU THR GLN SER LYS LEU SEQRES 3 F 147 SER GLU ARG THR GLY PHE SER GLN ASN THR ILE SER ASN SEQRES 4 F 147 HIS GLU ASN GLY ASN ARG ASN ILE GLY VAL ASN GLU ILE SEQRES 5 F 147 GLU ILE TYR GLY LYS GLY LEU GLY ILE PRO SER TYR ILE SEQRES 6 F 147 LEU HIS ARG ILE SER ASP GLU PHE LYS GLU LYS GLY TYR SEQRES 7 F 147 SER PRO THR LEU ASN ASP PHE GLY LYS PHE ASP LYS MET SEQRES 8 F 147 TYR SER TYR VAL ASN LYS ALA TYR TYR ASN ASP GLY ASP SEQRES 9 F 147 ILE TYR TYR SER SER TYR ASP LEU TYR ASP GLU THR ILE SEQRES 10 F 147 LYS LEU LEU GLU LEU LEU LYS GLU SER LYS ILE ASN VAL SEQRES 11 F 147 ASN ASP ILE ASP TYR ASP TYR VAL LEU LYS LEU TYR LYS SEQRES 12 F 147 GLN ILE LEU SER HET MG A 201 1 HETNAM MG MAGNESIUM ION FORMUL 7 MG MG 2+ HELIX 1 AA1 ARG A 85 PHE A 93 1 9 HELIX 2 AA2 ARG B 85 PHE B 93 1 9 HELIX 3 AA3 ARG C 85 PHE C 93 1 9 HELIX 4 AA4 THR D 12 MET D 25 1 14 HELIX 5 AA5 THR D 28 GLY D 37 1 10 HELIX 6 AA6 SER D 39 ASN D 48 1 10 HELIX 7 AA7 ASN D 56 GLY D 66 1 11 HELIX 8 AA8 PRO D 68 GLY D 83 1 16 HELIX 9 AA9 SER D 85 ASP D 90 1 6 HELIX 10 AB1 ASP D 90 ASP D 108 1 19 HELIX 11 AB2 ASP D 108 TYR D 113 1 6 HELIX 12 AB3 ASP D 117 SER D 132 1 16 HELIX 13 AB4 ASN D 135 ILE D 139 5 5 HELIX 14 AB5 ASP D 140 LEU D 152 1 13 HELIX 15 AB6 THR E 12 MET E 25 1 14 HELIX 16 AB7 THR E 28 GLY E 37 1 10 HELIX 17 AB8 SER E 39 ASN E 48 1 10 HELIX 18 AB9 ASN E 56 GLY E 66 1 11 HELIX 19 AC1 PRO E 68 GLY E 83 1 16 HELIX 20 AC2 SER E 85 ASP E 90 1 6 HELIX 21 AC3 ASP E 90 ASP E 108 1 19 HELIX 22 AC4 ASP E 108 TYR E 113 1 6 HELIX 23 AC5 ASP E 117 SER E 132 1 16 HELIX 24 AC6 ASN E 135 ILE E 139 5 5 HELIX 25 AC7 ASP E 140 LEU E 152 1 13 HELIX 26 AC8 THR F 12 MET F 25 1 14 HELIX 27 AC9 THR F 28 GLY F 37 1 10 HELIX 28 AD1 SER F 39 ASN F 48 1 10 HELIX 29 AD2 ASN F 56 GLY F 66 1 11 HELIX 30 AD3 PRO F 68 GLY F 83 1 16 HELIX 31 AD4 SER F 85 ASP F 90 1 6 HELIX 32 AD5 ASP F 90 ASP F 108 1 19 HELIX 33 AD6 ASP F 108 TYR F 113 1 6 HELIX 34 AD7 ASP F 117 SER F 132 1 16 HELIX 35 AD8 ASN F 135 ILE F 139 5 5 HELIX 36 AD9 ASP F 140 LEU F 152 1 13 SHEET 1 AA1 3 ILE A 70 ALA A 73 0 SHEET 2 AA1 3 LEU A 26 ARG A 30 -1 N ARG A 27 O ALA A 73 SHEET 3 AA1 3 ILE B 142 GLU B 144 1 O GLU B 143 N PHE A 28 SHEET 1 AA2 4 TYR A 48 TYR A 51 0 SHEET 2 AA2 4 ARG A 128 ARG A 136 -1 O LEU A 132 N TYR A 48 SHEET 3 AA2 4 CYS A 78 ALA A 83 -1 N ARG A 81 O ILE A 133 SHEET 4 AA2 4 VAL A 100 ILE A 101 -1 O ILE A 101 N GLY A 80 SHEET 1 AA3 2 TYR A 56 ILE A 58 0 SHEET 2 AA3 2 PHE A 121 VAL A 123 -1 O VAL A 123 N TYR A 56 SHEET 1 AA4 3 GLU A 62 LYS A 67 0 SHEET 2 AA4 3 GLY A 110 ASN A 115 -1 O LEU A 113 N ALA A 64 SHEET 3 AA4 3 ILE A 94 GLY A 97 -1 N ASP A 95 O PHE A 114 SHEET 1 AA5 3 GLU A 141 GLU A 144 0 SHEET 2 AA5 3 GLN C 25 ARG C 30 1 O LEU C 26 N GLU A 141 SHEET 3 AA5 3 ILE C 70 ALA C 73 -1 O GLN C 71 N ALA C 29 SHEET 1 AA6 3 ILE B 70 ALA B 73 0 SHEET 2 AA6 3 GLN B 25 ARG B 30 -1 N ARG B 27 O ALA B 73 SHEET 3 AA6 3 GLU C 141 VAL C 145 1 O GLU C 141 N LEU B 26 SHEET 1 AA7 4 TYR B 48 TYR B 51 0 SHEET 2 AA7 4 ARG B 128 ARG B 136 -1 O LEU B 132 N TYR B 48 SHEET 3 AA7 4 ARG C 128 PHE C 138 -1 O ARG C 136 N ARG B 136 SHEET 4 AA7 4 TYR C 48 TYR C 51 -1 N TYR C 48 O LEU C 132 SHEET 1 AA8 6 VAL B 100 ILE B 101 0 SHEET 2 AA8 6 CYS B 78 ALA B 83 -1 N GLY B 80 O ILE B 101 SHEET 3 AA8 6 ARG B 128 ARG B 136 -1 O GLN B 131 N ALA B 83 SHEET 4 AA8 6 ARG C 128 PHE C 138 -1 O ARG C 136 N ARG B 136 SHEET 5 AA8 6 CYS C 78 ALA C 83 -1 N ARG C 81 O ILE C 133 SHEET 6 AA8 6 VAL C 100 ILE C 101 -1 O ILE C 101 N GLY C 80 SHEET 1 AA9 2 TYR B 56 ILE B 58 0 SHEET 2 AA9 2 PHE B 121 VAL B 123 -1 O VAL B 123 N TYR B 56 SHEET 1 AB1 3 GLU B 62 LYS B 67 0 SHEET 2 AB1 3 GLY B 110 ASN B 115 -1 O VAL B 111 N VAL B 66 SHEET 3 AB1 3 ILE B 94 GLY B 97 -1 N ASP B 95 O PHE B 114 SHEET 1 AB2 2 TYR C 56 ILE C 58 0 SHEET 2 AB2 2 PHE C 121 VAL C 123 -1 O VAL C 123 N TYR C 56 SHEET 1 AB3 3 GLU C 62 LYS C 67 0 SHEET 2 AB3 3 GLY C 110 ASN C 115 -1 O VAL C 111 N VAL C 66 SHEET 3 AB3 3 ILE C 94 GLY C 97 -1 N ASP C 95 O PHE C 114 LINK OD2 ASP A 95 MG MG A 201 1555 1555 2.92 LINK MG MG A 201 OD2 ASP C 95 1555 1555 2.51 CRYST1 78.450 82.660 139.600 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007163 0.00000 MTRIX1 1 -0.140035 0.898545 0.415941 11.10856 1 MTRIX2 1 0.264958 0.438767 -0.858651 9.26251 1 MTRIX3 1 -0.954038 -0.010034 -0.299519 34.99060 1 MTRIX1 2 -0.136693 0.261218 -0.955552 32.37505 1 MTRIX2 2 0.900255 0.435253 -0.009798 -13.70413 1 MTRIX3 2 0.413347 -0.861580 -0.294658 13.86955 1 MTRIX1 3 -0.135668 0.276996 -0.951245 32.15911 1 MTRIX2 3 0.894198 0.447663 0.002825 -13.90638 1 MTRIX3 3 0.426620 -0.850218 -0.308423 13.85504 1 MTRIX1 4 -0.146054 0.910052 0.387909 11.33120 1 MTRIX2 4 0.232527 0.412708 -0.880683 10.52337 1 MTRIX3 4 -0.961561 -0.038429 -0.271889 34.87849 1