HEADER RNA BINDING PROTEIN 21-JAN-23 8C8U TITLE PRIESTIA MEGATERIUM MUPIROCIN-RESISTANT ISOLEUCYL-TRNA SYNTHETASE 2 TITLE 2 COMPLEXED WITH MUPIROCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOLEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ISOLEUCYL-TRNA SYNTHETASE,ILERS; COMPND 5 EC: 6.1.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRIESTIA MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 STRAIN: DSM-32; SOURCE 5 VARIANT: DE BARY 1884; SOURCE 6 ATCC: 14581; SOURCE 7 CELL: BACTERIAL; SOURCE 8 GENE: ILES, BG04_5198; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: B; SOURCE 12 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_CELL: BACTERIAL; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PET28B(+) KEYWDS ANTIBIOTIC, MUPIROCIN-RESISTANT, ILERS2, RNA-BINDING, MUPIROCIN, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BRKIC,M.LEIBUNDGUT,J.JABLONSKA,V.ZANKI,Z.CAR,V.PETROVIC PEROKOVIC, AUTHOR 2 I.GRUIC-SOVULJ,N.BAN REVDAT 3 27-MAR-24 8C8U 1 JRNL REVDAT 2 13-SEP-23 8C8U 1 JRNL REVDAT 1 23-AUG-23 8C8U 0 JRNL AUTH A.BRKIC,M.LEIBUNDGUT,J.JABLONSKA,V.ZANKI,Z.CAR, JRNL AUTH 2 V.PETROVIC PEROKOVIC,A.MARSAVELSKI,N.BAN,I.GRUIC-SOVULJ JRNL TITL ANTIBIOTIC HYPER-RESISTANCE IN A CLASS I AMINOACYL-TRNA JRNL TITL 2 SYNTHETASE WITH ALTERED ACTIVE SITE SIGNATURE MOTIF. JRNL REF NAT COMMUN V. 14 5498 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37679387 JRNL DOI 10.1038/S41467-023-41244-3 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 81179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 4034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2300 - 6.1400 0.99 3061 163 0.1717 0.1820 REMARK 3 2 6.1400 - 4.8800 0.99 2936 156 0.1755 0.2098 REMARK 3 3 4.8800 - 4.2600 1.00 2891 150 0.1454 0.1778 REMARK 3 4 4.2600 - 3.8700 0.99 2909 148 0.1488 0.1973 REMARK 3 5 3.8700 - 3.5900 0.99 2841 159 0.1655 0.1933 REMARK 3 6 3.5900 - 3.3800 0.99 2848 154 0.1811 0.2416 REMARK 3 7 3.3800 - 3.2100 0.99 2836 136 0.1799 0.2227 REMARK 3 8 3.2100 - 3.0700 0.98 2802 164 0.2044 0.2541 REMARK 3 9 3.0700 - 2.9500 0.98 2804 133 0.2043 0.2290 REMARK 3 10 2.9500 - 2.8500 0.97 2790 134 0.1926 0.2284 REMARK 3 11 2.8500 - 2.7600 0.97 2763 158 0.1845 0.2484 REMARK 3 12 2.7600 - 2.6800 0.96 2744 151 0.1923 0.2582 REMARK 3 13 2.6800 - 2.6100 0.94 2685 136 0.1971 0.2344 REMARK 3 14 2.6100 - 2.5500 0.95 2683 134 0.1901 0.2415 REMARK 3 15 2.5500 - 2.4900 0.94 2654 149 0.1955 0.2165 REMARK 3 16 2.4900 - 2.4400 0.94 2685 133 0.1894 0.2323 REMARK 3 17 2.4400 - 2.3900 0.93 2643 139 0.1916 0.2645 REMARK 3 18 2.3900 - 2.3400 0.91 2602 125 0.1944 0.2654 REMARK 3 19 2.3400 - 2.3000 0.92 2587 144 0.1962 0.2102 REMARK 3 20 2.3000 - 2.2600 0.91 2561 129 0.2039 0.2524 REMARK 3 21 2.2600 - 2.2300 0.90 2532 131 0.1990 0.2311 REMARK 3 22 2.2300 - 2.1900 0.89 2537 139 0.2020 0.2347 REMARK 3 23 2.1900 - 2.1600 0.88 2500 125 0.2074 0.2678 REMARK 3 24 2.1600 - 2.1300 0.88 2472 135 0.2096 0.2758 REMARK 3 25 2.1300 - 2.1000 0.86 2427 123 0.2298 0.2720 REMARK 3 26 2.1000 - 2.0700 0.85 2422 105 0.2389 0.2871 REMARK 3 27 2.0700 - 2.0500 0.84 2331 130 0.2554 0.3319 REMARK 3 28 2.0500 - 2.0200 0.83 2346 121 0.2700 0.3464 REMARK 3 29 2.0200 - 2.0000 0.80 2253 130 0.2799 0.3198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8493 REMARK 3 ANGLE : 0.909 11530 REMARK 3 CHIRALITY : 0.213 1262 REMARK 3 PLANARITY : 0.005 1488 REMARK 3 DIHEDRAL : 14.213 3095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292126618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8-8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999951402559115 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : 2.9 T SUPERBEND MAGNET REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20190806 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20190806 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.901 REMARK 200 RESOLUTION RANGE LOW (A) : 48.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 2.57900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER CCP4INTERFACE 7.0.077 REMARK 200 STARTING MODEL: 1JZS REMARK 200 REMARK 200 REMARK: SINGLE RHOMBOHEDRAL CRYSTALS SUSPENDED IN THE SOLUTION. REMARK 200 MECHANICALLY ROBUST BUT PRONE TO CRACKING DURING TEMPERATURE REMARK 200 CHANGE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.4 M POTASSIUM TARTRATE 15-25 % REMARK 280 (W/V) PEG3350 12.5 MM HEPES-KOH PH=7,5 AT 20 OC 25 MM NACL 5 MM REMARK 280 LITHIUM-MUPIROCIN 8.25 MG/ML WT-HVGH-BMILERS2, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.79000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1701 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1959 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 883 REMARK 465 LYS A 884 REMARK 465 ASN A 885 REMARK 465 LEU A 886 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 870 CG CD REMARK 470 LYS A 871 CG CD CE NZ REMARK 470 PHE A 872 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 874 CG CD CE NZ REMARK 470 GLN A 875 CG CD OE1 NE2 REMARK 470 VAL A 876 CG1 CG2 REMARK 470 ASN A 877 CG OD1 ND2 REMARK 470 GLU A 878 CG CD OE1 OE2 REMARK 470 VAL A 879 CG1 CG2 REMARK 470 ASN A 880 CG OD1 ND2 REMARK 470 GLN A 881 CG CD OE1 NE2 REMARK 470 SER A 887 OG REMARK 470 GLU A 888 CG CD OE1 OE2 REMARK 470 GLU A 889 CG CD OE1 OE2 REMARK 470 LYS A 890 CG CD CE NZ REMARK 470 LYS A 892 CG CD CE NZ REMARK 470 GLU A 893 CG CD OE1 OE2 REMARK 470 PHE A 894 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 895 CG1 CG2 REMARK 470 GLU A 896 CG CD OE1 OE2 REMARK 470 GLN A 897 CG CD OE1 NE2 REMARK 470 LYS A 899 CG CD CE NZ REMARK 470 LEU A 900 CG CD1 CD2 REMARK 470 SER A 901 OG REMARK 470 VAL A 902 CG1 CG2 REMARK 470 THR A 903 OG1 CG2 REMARK 470 LEU A 904 CG CD1 CD2 REMARK 470 SER A 906 OG REMARK 470 GLU A 908 CG CD OE1 OE2 REMARK 470 ASN A 909 CG OD1 ND2 REMARK 470 LEU A 910 CG CD1 CD2 REMARK 470 THR A 911 OG1 CG2 REMARK 470 LEU A 912 CG CD1 CD2 REMARK 470 GLU A 913 CG CD OE1 OE2 REMARK 470 THR A 914 OG1 CG2 REMARK 470 GLU A 915 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1883 O HOH A 1919 2.09 REMARK 500 OD1 ASP A 775 O HOH A 1201 2.10 REMARK 500 O HOH A 1891 O HOH A 1918 2.14 REMARK 500 OD2 ASP A 853 OH TYR A 859 2.15 REMARK 500 OG1 THR A 944 O HOH A 1202 2.16 REMARK 500 O HOH A 1213 O HOH A 1875 2.17 REMARK 500 OD2 ASP A 780 O HOH A 1203 2.18 REMARK 500 O HOH A 1540 O HOH A 1610 2.19 REMARK 500 O HOH A 1591 O HOH A 1750 2.19 REMARK 500 O HOH A 1894 O HOH A 1955 2.19 REMARK 500 O HOH A 1373 O HOH A 1683 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 198 148.18 -172.65 REMARK 500 VAL A 349 77.17 -118.21 REMARK 500 ASP A 391 36.09 37.23 REMARK 500 ASP A 620 -11.61 72.98 REMARK 500 ASP A 620 -40.82 78.73 REMARK 500 TRP A 715 -53.56 -123.22 REMARK 500 MET A 729 65.16 -161.75 REMARK 500 LYS A 871 109.82 -51.51 REMARK 500 SER A 906 -135.84 -72.34 REMARK 500 GLU A 908 -31.56 -150.24 REMARK 500 THR A 914 -101.44 -147.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1963 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1964 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 181 SG REMARK 620 2 CYS A 184 SG 102.9 REMARK 620 3 CYS A 387 SG 98.4 117.0 REMARK 620 4 CYS A 390 SG 94.8 122.5 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 459 SG REMARK 620 2 CYS A 462 SG 109.6 REMARK 620 3 CYS A 500 SG 106.6 115.3 REMARK 620 4 CYS A 503 SG 95.5 117.7 109.8 REMARK 620 N 1 2 3 DBREF1 8C8U A 1 1032 UNP A0A0B6AVD3_PRIM2 DBREF2 8C8U A A0A0B6AVD3 1 1032 SEQADV 8C8U VAL A 856 UNP A0A0B6AVD LEU 856 CONFLICT SEQADV 8C8U LEU A 857 UNP A0A0B6AVD VAL 857 CONFLICT SEQRES 1 A 1032 MET LYS GLU VAL ASN VAL ARG GLU SER SER GLN GLU ARG SEQRES 2 A 1032 GLU GLN ARG ILE GLN GLN GLN TRP GLN LYS GLY ASN VAL SEQRES 3 A 1032 PHE GLN GLN SER VAL GLN ASN ARG GLU GLY TYR PRO SER SEQRES 4 A 1032 PHE VAL PHE TYR GLU GLY PRO PRO THR ALA ASN GLY LEU SEQRES 5 A 1032 PRO HIS VAL GLY HIS ALA LEU GLY ARG THR ILE LYS ASP SEQRES 6 A 1032 VAL VAL ALA ARG TYR LYS THR MET THR GLY HIS GLN VAL SEQRES 7 A 1032 ILE ARG LYS ALA GLY TRP ASP THR HIS GLY LEU PRO VAL SEQRES 8 A 1032 GLU LEU GLY VAL GLU LYS GLN LEU GLY ILE SER GLY LYS SEQRES 9 A 1032 HIS ASP ILE GLU LYS TYR GLY VAL GLU ALA PHE ILE ASN SEQRES 10 A 1032 LYS CYS LYS GLU SER VAL PHE VAL TYR GLU LYS GLN TRP SEQRES 11 A 1032 ARG THR PHE THR GLU GLN LEU GLY TYR TRP VAL ASP MET SEQRES 12 A 1032 GLU ASP PRO TYR ILE THR LEU GLU ASN SER TYR ILE GLU SEQRES 13 A 1032 SER VAL TRP ASN VAL LEU GLY THR ILE HIS ASP LYS GLY SEQRES 14 A 1032 LEU LEU TYR LYS GLY HIS ARG VAL SER PRO TYR CYS PRO SEQRES 15 A 1032 SER CYS GLN THR SER LEU SER SER HIS GLU VAL ALA GLN SEQRES 16 A 1032 GLY TYR LYS ASP VAL LYS ASP LEU THR VAL THR VAL LYS SEQRES 17 A 1032 PHE LYS VAL LYS ASN ARG ASP ASN GLU TYR PHE LEU GLY SEQRES 18 A 1032 TRP THR THR THR PRO TRP THR LEU PRO SER ASN VAL ALA SEQRES 19 A 1032 LEU ALA VAL HIS GLU GLU MET SER TYR VAL ARG ALA GLU SEQRES 20 A 1032 GLN GLY ASP SER VAL TYR ILE VAL ALA GLU ALA LEU ALA SEQRES 21 A 1032 ASP LYS VAL LEU LYS GLY GLU TYR SER VAL LEU SER HIS SEQRES 22 A 1032 HIS LYS GLY ASN GLU LEU LYS GLY MET SER TYR GLU PRO SEQRES 23 A 1032 PRO PHE ASN PHE VAL LYS VAL GLU LYS GLY HIS GLU VAL SEQRES 24 A 1032 VAL THR ALA ASP TYR VAL THR ASP GLN SER GLY THR GLY SEQRES 25 A 1032 VAL VAL HIS LEU ALA PRO ALA TYR GLY GLU ASP ASP TYR SEQRES 26 A 1032 ARG VAL VAL LYS GLU ASN GLY PHE SER PHE VAL ASN VAL SEQRES 27 A 1032 VAL ASP GLU LYS GLY GLN TYR THR SER GLU VAL PRO PRO SEQRES 28 A 1032 PHE GLN GLY ARG PHE VAL LYS ASP CYS ASP VAL ASP ILE SEQRES 29 A 1032 VAL ARG TYR LEU ALA ASN GLN ASP VAL LEU TYR HIS LYS SEQRES 30 A 1032 GLU LYS HIS GLU HIS SER TYR PRO PHE CYS TRP ARG CYS SEQRES 31 A 1032 ASP SER PRO LEU LEU TYR TYR ALA ASN GLU SER TRP PHE SEQRES 32 A 1032 ILE GLN THR THR ALA LEU LYS GLU GLN PHE LEU LYS ASN SEQRES 33 A 1032 ASN GLU SER VAL LYS TRP TYR PRO ASP HIS ILE LYS HIS SEQRES 34 A 1032 GLY ARG PHE GLY LYS PHE LEU GLU ASN MET VAL ASP TRP SEQRES 35 A 1032 ASN ILE SER ARG LYS ARG TYR TRP GLY THR PRO LEU ASN SEQRES 36 A 1032 VAL TRP GLU CYS GLU GLY CYS GLN HIS GLN VAL ALA PRO SEQRES 37 A 1032 LYS SER ILE LYS GLU LEU GLN LYS HIS ALA SER HIS TYR SEQRES 38 A 1032 VAL ASP ASP SER ILE GLU LEU HIS LYS PRO TYR VAL ASP SEQRES 39 A 1032 ASP VAL GLN LEU THR CYS PRO VAL CYS SER GLY GLU MET SEQRES 40 A 1032 LYS ARG THR PRO GLU VAL ILE ASP VAL TRP PHE ASP SER SEQRES 41 A 1032 GLY SER MET PRO PHE ALA GLN TYR HIS TYR PRO PHE GLU SEQRES 42 A 1032 ASN SER GLU LEU PHE GLN LYS GLN PHE PRO ALA ASP VAL SEQRES 43 A 1032 ILE ALA GLU GLY ILE ASP GLN THR ARG GLY TRP PHE TYR SEQRES 44 A 1032 SER LEU MET ALA VAL SER THR LEU PHE THR GLY LYS ALA SEQRES 45 A 1032 PRO TYR LYS ARG VAL LEU SER LEU GLY HIS VAL LEU ASP SEQRES 46 A 1032 GLU ASN GLY GLN LYS MET SER LYS SER LYS GLY ASN ALA SEQRES 47 A 1032 LEU ASP PRO VAL ASP LEU ILE HIS THR PHE GLY ALA ASP SEQRES 48 A 1032 ALA LEU ARG TRP ALA LEU LEU ALA ASP SER ALA PRO TRP SEQRES 49 A 1032 ASN PRO LYS LYS PHE SER GLU ARG VAL VAL GLN GLU ALA SEQRES 50 A 1032 LYS SER LYS VAL ILE ASP THR LEU VAL ASN VAL TYR GLY SEQRES 51 A 1032 PHE TYR VAL LEU TYR ALA LYS LEU ASP GLY TYR ASP PRO SEQRES 52 A 1032 GLU GLN THR TYR GLU LEU LYS LYS THR LYS LEU ASP GLU SEQRES 53 A 1032 TRP ILE LEU SER ARG LEU HIS SER THR VAL LYS ARG ALA SEQRES 54 A 1032 THR VAL HIS LEU GLU ASP TYR GLY PHE THR SER ALA ALA SEQRES 55 A 1032 ARG GLU ILE ALA VAL PHE ILE GLU GLU LEU SER ASN TRP SEQRES 56 A 1032 TYR VAL ARG ARG SER ARG ASP ARG PHE TRP SER GLU GLY SEQRES 57 A 1032 MET ASP GLY GLU LYS ALA ALA ALA TYR ASP THR LEU HIS SEQRES 58 A 1032 GLU VAL LEU VAL THR LEU SER GLN LEU LEU ALA PRO PHE SEQRES 59 A 1032 THR PRO PHE VAL ALA ASP ASP VAL HIS GLU ASN LEU THR SEQRES 60 A 1032 GLY LYS SER VAL HIS LEU ALA ASP TYR PRO ALA CYS ASP SEQRES 61 A 1032 GLN THR LYS VAL ASN GLU LYS LEU GLU LYS GLU MET ALA SEQRES 62 A 1032 ALA VAL LEU GLN VAL VAL GLU LEU GLY ARG SER ILE ARG SEQRES 63 A 1032 ASN THR HIS SER LEU LYS VAL LYS GLN PRO LEU GLN SER SEQRES 64 A 1032 LEU SER LEU VAL VAL THR GLU GLU ASP VAL GLU TRP LYS SEQRES 65 A 1032 ALA TYR ARG ASP VAL ILE LYS ASP GLU LEU ASN VAL LYS SEQRES 66 A 1032 ASN PHE ASN VAL GLU GLN ASP ASP ASP LYS VAL LEU SER SEQRES 67 A 1032 TYR VAL LEU LYS LEU ASP PHE LYS GLN ALA GLY PRO LYS SEQRES 68 A 1032 PHE GLY LYS GLN VAL ASN GLU VAL ASN GLN ALA LEU LYS SEQRES 69 A 1032 ASN LEU SER GLU GLU LYS GLY LYS GLU PHE VAL GLU GLN SEQRES 70 A 1032 GLY LYS LEU SER VAL THR LEU ALA SER GLY GLU ASN LEU SEQRES 71 A 1032 THR LEU GLU THR GLU ASP VAL LEU VAL GLU LYS VAL PRO SEQRES 72 A 1032 LYS GLU GLY PHE ALA VAL ALA SER ASN GLY MET TYR THR SEQRES 73 A 1032 ALA VAL LEU ASP THR ALA LEU THR GLU GLU LEU VAL GLN SEQRES 74 A 1032 GLU GLY VAL ALA ARG GLU VAL ILE ARG ALA VAL GLN ASP SEQRES 75 A 1032 TYR ARG LYS LYS LEU ASP LEU PRO VAL ASN SER ARG ILE SEQRES 76 A 1032 ASN LEU GLU LEU SER GLY ASP GLU GLU VAL GLN LYS ALA SEQRES 77 A 1032 VAL ALA LYS PHE GLU THR LEU LEU GLN GLU ASN LEU LEU SEQRES 78 A 1032 LEU HIS SER LEU SER VAL LYS GLU THR ILE LYS ASN GLY SEQRES 79 A 1032 GLU THR VAL LYS VAL GLY THR LYS GLN VAL VAL LEU ARG SEQRES 80 A 1032 VAL LEU ASN GLN SER HET ZN A1101 1 HET MRC A1102 35 HET ZN A1103 1 HET TLA A1104 10 HET TLA A1105 10 HET 1PE A1106 16 HETNAM ZN ZINC ION HETNAM MRC MUPIROCIN HETNAM TLA L(+)-TARTARIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN MRC 9-[(E)-4-[(2S,3R,4R,5S)-3,4-BIS(OXIDANYL)-5-[[(2S,3S)- HETSYN 2 MRC 3-[(2S,3S)-3-OXIDANYLBUTAN-2-YL]OXIRAN-2- HETSYN 3 MRC YL]METHYL]OXAN-2-YL]-3-METHYL-BUT-2-ENOYL]OXYNONANOIC HETSYN 4 MRC ACID; PSEUDOMONIC ACID HETSYN 1PE PEG400 FORMUL 2 ZN 2(ZN 2+) FORMUL 3 MRC C26 H44 O9 FORMUL 5 TLA 2(C4 H6 O6) FORMUL 7 1PE C10 H22 O6 FORMUL 8 HOH *764(H2 O) HELIX 1 AA1 SER A 9 GLY A 24 1 16 HELIX 2 AA2 ASN A 25 ASN A 33 1 9 HELIX 3 AA3 HIS A 54 THR A 74 1 21 HELIX 4 AA4 GLY A 88 GLY A 100 1 13 HELIX 5 AA5 SER A 102 GLY A 111 1 10 HELIX 6 AA6 GLY A 111 VAL A 123 1 13 HELIX 7 AA7 TYR A 126 GLY A 138 1 13 HELIX 8 AA8 GLU A 151 LYS A 168 1 18 HELIX 9 AA9 SER A 189 GLN A 195 1 7 HELIX 10 AB1 THR A 225 ASN A 232 5 8 HELIX 11 AB2 LEU A 259 LEU A 264 1 6 HELIX 12 AB3 GLY A 276 LYS A 280 1 5 HELIX 13 AB4 ALA A 317 TYR A 320 5 4 HELIX 14 AB5 GLY A 321 ASN A 331 1 11 HELIX 15 AB6 VAL A 349 GLN A 353 5 5 HELIX 16 AB7 PHE A 356 ASP A 359 5 4 HELIX 17 AB8 CYS A 360 GLN A 371 1 12 HELIX 18 AB9 THR A 406 ALA A 408 5 3 HELIX 19 AC1 LEU A 409 SER A 419 1 11 HELIX 20 AC2 PRO A 424 LYS A 428 5 5 HELIX 21 AC3 GLY A 430 ASN A 438 1 9 HELIX 22 AC4 SER A 470 ALA A 478 1 9 HELIX 23 AC5 PRO A 491 VAL A 496 5 6 HELIX 24 AC6 ASP A 515 SER A 522 1 8 HELIX 25 AC7 SER A 522 GLN A 527 1 6 HELIX 26 AC8 ASN A 534 GLN A 541 1 8 HELIX 27 AC9 ASP A 552 THR A 554 5 3 HELIX 28 AD1 GLY A 556 GLY A 570 1 15 HELIX 29 AD2 ASP A 600 GLY A 609 1 10 HELIX 30 AD3 GLY A 609 ALA A 619 1 11 HELIX 31 AD4 SER A 630 VAL A 641 1 12 HELIX 32 AD5 VAL A 641 ASP A 659 1 19 HELIX 33 AD6 THR A 672 ASP A 695 1 24 HELIX 34 AD7 GLY A 697 TRP A 715 1 19 HELIX 35 AD8 VAL A 717 ARG A 719 5 3 HELIX 36 AD9 SER A 720 SER A 726 1 7 HELIX 37 AE1 ASP A 730 ALA A 752 1 23 HELIX 38 AE2 THR A 755 GLY A 768 1 14 HELIX 39 AE3 SER A 770 ALA A 774 5 5 HELIX 40 AE4 ASP A 780 VAL A 784 5 5 HELIX 41 AE5 ASN A 785 HIS A 809 1 25 HELIX 42 AE6 GLU A 830 ALA A 833 5 4 HELIX 43 AE7 TYR A 834 ASN A 843 1 10 HELIX 44 AE8 GLY A 873 GLN A 881 1 9 HELIX 45 AE9 GLU A 888 LEU A 900 1 13 HELIX 46 AF1 THR A 944 LEU A 967 1 24 HELIX 47 AF2 ASP A 982 PHE A 992 1 11 HELIX 48 AF3 PHE A 992 LEU A 1000 1 9 SHEET 1 AA1 2 GLY A 83 TRP A 84 0 SHEET 2 AA1 2 TYR A 147 ILE A 148 1 O TYR A 147 N TRP A 84 SHEET 1 AA2 4 THR A 186 SER A 187 0 SHEET 2 AA2 4 LEU A 171 CYS A 181 -1 N CYS A 181 O THR A 186 SHEET 3 AA2 4 LEU A 395 ILE A 404 -1 O PHE A 403 N TYR A 172 SHEET 4 AA2 4 TRP A 442 ASN A 443 -1 O TRP A 442 N ILE A 404 SHEET 1 AA3 6 SER A 269 LYS A 275 0 SHEET 2 AA3 6 SER A 242 GLN A 248 -1 N TYR A 243 O HIS A 274 SHEET 3 AA3 6 SER A 251 ALA A 256 -1 O TYR A 253 N ALA A 246 SHEET 4 AA3 6 GLU A 217 THR A 223 1 N TYR A 218 O ILE A 254 SHEET 5 AA3 6 TYR A 197 LYS A 210 -1 N VAL A 207 O GLY A 221 SHEET 6 AA3 6 LEU A 374 PRO A 385 -1 O TYR A 384 N LYS A 198 SHEET 1 AA4 3 VAL A 299 THR A 301 0 SHEET 2 AA4 3 ALA A 234 VAL A 237 1 N LEU A 235 O VAL A 300 SHEET 3 AA4 3 VAL A 314 LEU A 316 -1 O VAL A 314 N ALA A 236 SHEET 1 AA5 3 LYS A 421 TYR A 423 0 SHEET 2 AA5 3 ARG A 576 LEU A 580 1 O SER A 579 N TYR A 423 SHEET 3 AA5 3 ILE A 547 GLY A 550 1 N ILE A 547 O LEU A 578 SHEET 1 AA6 2 SER A 445 ARG A 446 0 SHEET 2 AA6 2 VAL A 513 ILE A 514 -1 O VAL A 513 N ARG A 446 SHEET 1 AA7 4 GLN A 465 VAL A 466 0 SHEET 2 AA7 4 TRP A 457 CYS A 459 -1 N TRP A 457 O VAL A 466 SHEET 3 AA7 4 GLU A 506 ARG A 509 -1 O LYS A 508 N GLU A 458 SHEET 4 AA7 4 LEU A 498 THR A 499 -1 N LEU A 498 O MET A 507 SHEET 1 AA8 4 VAL A 844 GLU A 850 0 SHEET 2 AA8 4 LEU A 817 VAL A 823 1 N LEU A 822 O GLU A 850 SHEET 3 AA8 4 TYR A 935 ASP A 940 -1 O ASP A 940 N SER A 819 SHEET 4 AA8 4 PHE A 927 ASN A 932 -1 N ALA A 930 O ALA A 937 SHEET 1 AA9 2 LEU A 857 LEU A 863 0 SHEET 2 AA9 2 VAL A 917 PRO A 923 -1 O VAL A 922 N SER A 858 SHEET 1 AB1 2 VAL A 902 ALA A 905 0 SHEET 2 AB1 2 LEU A 910 GLU A 913 -1 O THR A 911 N LEU A 904 SHEET 1 AB2 4 LEU A1002 VAL A1007 0 SHEET 2 AB2 4 ILE A 975 SER A 980 1 N ILE A 975 O HIS A1003 SHEET 3 AB2 4 LYS A1022 LEU A1029 -1 O ARG A1027 N GLU A 978 SHEET 4 AB2 4 GLU A1015 VAL A1019 -1 N VAL A1017 O VAL A1024 LINK SG CYS A 181 ZN ZN A1103 1555 1555 2.62 LINK SG CYS A 184 ZN ZN A1103 1555 1555 2.23 LINK SG CYS A 387 ZN ZN A1103 1555 1555 2.18 LINK SG CYS A 390 ZN ZN A1103 1555 1555 2.48 LINK SG CYS A 459 ZN ZN A1101 1555 1555 2.32 LINK SG CYS A 462 ZN ZN A1101 1555 1555 2.44 LINK SG CYS A 500 ZN ZN A1101 1555 1555 2.27 LINK SG CYS A 503 ZN ZN A1101 1555 1555 2.43 CISPEP 1 TYR A 423 PRO A 424 0 3.48 CISPEP 2 LYS A 490 PRO A 491 0 0.86 CISPEP 3 TYR A 530 PRO A 531 0 0.90 CISPEP 4 PHE A 542 PRO A 543 0 -2.51 CRYST1 89.580 124.830 114.460 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008737 0.00000