HEADER OXIDOREDUCTASE 23-JAN-23 8C9I TITLE CYTOCHROME P450 CYP141A1 (RV3121) FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 141; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: CYP141, RV3121, MTCY164.31; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME P450 HEME-CONTAINING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.R.SELVAM REVDAT 1 07-FEB-24 8C9I 0 JRNL AUTH I.R.SELVAM JRNL TITL 2.05 ANGSTROM STRUCTURE OF CYTOCHROME P450 CYP141A1 (RV3121) JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 43622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 82.2900 - 5.1600 1.00 2968 177 0.2165 0.2048 REMARK 3 2 5.1600 - 4.1000 1.00 2754 176 0.1475 0.1675 REMARK 3 3 4.1000 - 3.5800 1.00 2761 127 0.1798 0.2072 REMARK 3 4 3.5800 - 3.2500 1.00 2732 140 0.2078 0.2381 REMARK 3 5 3.2500 - 3.0200 1.00 2698 126 0.2348 0.3022 REMARK 3 6 3.0200 - 2.8400 0.99 2661 149 0.2701 0.3397 REMARK 3 7 2.8400 - 2.7000 0.99 2671 121 0.2301 0.2503 REMARK 3 8 2.7000 - 2.5800 0.99 2648 126 0.2138 0.2436 REMARK 3 9 2.5800 - 2.4800 0.98 2602 126 0.2037 0.2327 REMARK 3 10 2.4800 - 2.4000 0.97 2588 134 0.2172 0.2618 REMARK 3 11 2.4000 - 2.3200 0.95 2527 130 0.2657 0.3689 REMARK 3 12 2.3200 - 2.2600 0.94 2479 123 0.2621 0.2853 REMARK 3 13 2.2600 - 2.2000 0.92 2432 130 0.2317 0.2787 REMARK 3 14 2.2000 - 2.1400 0.91 2436 117 0.2248 0.2470 REMARK 3 15 2.1400 - 2.0900 0.88 2299 146 0.2484 0.2999 REMARK 3 16 2.0900 - 2.0500 0.84 2179 139 0.2691 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.215 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3170 REMARK 3 ANGLE : 0.616 4346 REMARK 3 CHIRALITY : 0.039 496 REMARK 3 PLANARITY : 0.003 573 REMARK 3 DIHEDRAL : 7.142 436 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7837 71.4612 148.5154 REMARK 3 T TENSOR REMARK 3 T11: 0.7610 T22: 0.5162 REMARK 3 T33: 0.6685 T12: 0.1613 REMARK 3 T13: -0.1328 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.3175 L22: 1.7511 REMARK 3 L33: 1.6133 L12: 0.0146 REMARK 3 L13: 0.5458 L23: 0.4096 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: 0.1173 S13: 0.5850 REMARK 3 S21: -0.0056 S22: -0.0395 S23: -0.0302 REMARK 3 S31: -0.8740 S32: -0.1152 S33: 0.1536 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6340 50.8909 136.1227 REMARK 3 T TENSOR REMARK 3 T11: 0.3988 T22: 0.6332 REMARK 3 T33: 0.3645 T12: 0.0303 REMARK 3 T13: -0.0801 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.8049 L22: 1.6827 REMARK 3 L33: 2.1286 L12: 0.0241 REMARK 3 L13: -0.0473 L23: 0.3213 REMARK 3 S TENSOR REMARK 3 S11: -0.1225 S12: 0.4479 S13: -0.0986 REMARK 3 S21: -0.1945 S22: -0.0849 S23: 0.1740 REMARK 3 S31: -0.3555 S32: -0.1935 S33: 0.2126 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0875 50.5674 128.4196 REMARK 3 T TENSOR REMARK 3 T11: 0.4523 T22: 0.7390 REMARK 3 T33: 0.3581 T12: -0.0621 REMARK 3 T13: 0.0181 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.5967 L22: 2.5629 REMARK 3 L33: 1.4266 L12: 1.2989 REMARK 3 L13: -0.3419 L23: -0.1784 REMARK 3 S TENSOR REMARK 3 S11: -0.2567 S12: 0.5857 S13: -0.1513 REMARK 3 S21: -0.5550 S22: 0.0503 S23: -0.0653 REMARK 3 S31: -0.3348 S32: 0.3081 S33: 0.1620 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9268 61.4248 125.8998 REMARK 3 T TENSOR REMARK 3 T11: 0.6702 T22: 0.7967 REMARK 3 T33: 0.5011 T12: -0.0211 REMARK 3 T13: -0.0899 T23: 0.1105 REMARK 3 L TENSOR REMARK 3 L11: 1.8590 L22: 5.7038 REMARK 3 L33: 1.1793 L12: -0.8826 REMARK 3 L13: -0.0591 L23: 0.4237 REMARK 3 S TENSOR REMARK 3 S11: -0.2759 S12: 0.7006 S13: 0.5335 REMARK 3 S21: -0.0345 S22: 0.5908 S23: -0.8881 REMARK 3 S31: -0.5788 S32: 0.4814 S33: -0.0379 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8272 57.7510 121.5012 REMARK 3 T TENSOR REMARK 3 T11: 0.7515 T22: 0.8974 REMARK 3 T33: 0.4490 T12: 0.0043 REMARK 3 T13: -0.1493 T23: 0.0882 REMARK 3 L TENSOR REMARK 3 L11: 4.1500 L22: 2.5808 REMARK 3 L33: 1.4133 L12: 2.6738 REMARK 3 L13: 0.2303 L23: 0.7181 REMARK 3 S TENSOR REMARK 3 S11: -0.6365 S12: 0.9550 S13: 0.4355 REMARK 3 S21: -1.2549 S22: 0.5530 S23: 0.7427 REMARK 3 S31: -0.5324 S32: 0.0812 S33: 0.1078 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6185 42.2044 129.5944 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.7677 REMARK 3 T33: 0.4823 T12: 0.0164 REMARK 3 T13: -0.0774 T23: -0.1445 REMARK 3 L TENSOR REMARK 3 L11: 6.6711 L22: 2.7130 REMARK 3 L33: 3.8194 L12: 1.5160 REMARK 3 L13: 0.0000 L23: -0.8055 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: 0.6049 S13: -0.7183 REMARK 3 S21: -0.0591 S22: 0.1678 S23: -0.0340 REMARK 3 S31: 0.4852 S32: -0.3172 S33: -0.0708 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6267 55.6405 135.4705 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.3391 REMARK 3 T33: 0.2505 T12: -0.0136 REMARK 3 T13: -0.0360 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.5455 L22: 1.6983 REMARK 3 L33: 2.0412 L12: -0.2446 REMARK 3 L13: 1.0464 L23: 0.3406 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -0.0657 S13: 0.4469 REMARK 3 S21: -0.1442 S22: -0.1109 S23: 0.4484 REMARK 3 S31: -0.2760 S32: -0.5789 S33: 0.0741 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9350 50.4375 149.5840 REMARK 3 T TENSOR REMARK 3 T11: 0.4368 T22: 0.6094 REMARK 3 T33: 0.4871 T12: -0.0470 REMARK 3 T13: -0.0548 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 2.7354 L22: 2.4077 REMARK 3 L33: 2.7522 L12: 0.1299 REMARK 3 L13: -0.7076 L23: 1.1274 REMARK 3 S TENSOR REMARK 3 S11: -0.2549 S12: -0.5447 S13: 0.1943 REMARK 3 S21: 0.2252 S22: 0.3159 S23: -0.3806 REMARK 3 S31: 0.0567 S32: 0.6570 S33: -0.0340 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3598 68.4763 149.1349 REMARK 3 T TENSOR REMARK 3 T11: 0.6241 T22: 0.5630 REMARK 3 T33: 0.5696 T12: 0.1916 REMARK 3 T13: -0.1473 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 1.1419 L22: 1.3952 REMARK 3 L33: 1.5327 L12: 0.2614 REMARK 3 L13: 1.0794 L23: -0.4183 REMARK 3 S TENSOR REMARK 3 S11: -0.2438 S12: -0.1791 S13: 0.4498 REMARK 3 S21: -0.0080 S22: 0.1261 S23: 0.0681 REMARK 3 S31: -0.6545 S32: -0.4822 S33: 0.0775 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2912 52.3907 149.2996 REMARK 3 T TENSOR REMARK 3 T11: 0.3512 T22: 0.4368 REMARK 3 T33: 0.4474 T12: 0.0275 REMARK 3 T13: -0.0494 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.9726 L22: 0.7142 REMARK 3 L33: 3.1625 L12: -0.0382 REMARK 3 L13: 0.1152 L23: 0.3919 REMARK 3 S TENSOR REMARK 3 S11: -0.2039 S12: 0.0684 S13: 0.1305 REMARK 3 S21: 0.0536 S22: 0.1072 S23: -0.1227 REMARK 3 S31: -0.2890 S32: 0.1365 S33: 0.1226 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 368 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1217 60.9855 135.9001 REMARK 3 T TENSOR REMARK 3 T11: 0.4694 T22: 0.6085 REMARK 3 T33: 0.4755 T12: -0.1865 REMARK 3 T13: -0.0307 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 3.3282 L22: 3.8183 REMARK 3 L33: 2.2753 L12: -0.0599 REMARK 3 L13: -0.4493 L23: -0.5553 REMARK 3 S TENSOR REMARK 3 S11: -0.2341 S12: 0.5756 S13: 0.7917 REMARK 3 S21: -0.3554 S22: 0.0442 S23: -0.7543 REMARK 3 S31: -0.6223 S32: 0.5968 S33: 0.0940 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292128029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45347 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 82.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 18.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M COBALT (II) CHLORIDE REMARK 280 HEXAHYDRATE 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE 0.1 M BIS-TRIS REMARK 280 PROPANE PH 8.0 22.5% V/V PEG SMEAR MEDIUM 2% V/V/ GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.52333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.26167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.39250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.13083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 220.65417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.52333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.26167 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.13083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.39250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 220.65417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -42.21 -147.25 REMARK 500 PHE A 75 -73.37 -140.93 REMARK 500 LEU A 104 48.33 -86.09 REMARK 500 VAL A 140 -63.00 -123.01 REMARK 500 CYS A 174 29.44 -162.32 REMARK 500 VAL A 238 -64.65 -105.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEB A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 347 SG REMARK 620 2 HEB A 501 NA 99.5 REMARK 620 3 HEB A 501 NB 94.7 89.6 REMARK 620 4 HEB A 501 NC 96.6 163.9 88.9 REMARK 620 5 HEB A 501 ND 101.3 87.2 164.0 89.8 REMARK 620 6 HOH A 602 O 168.1 91.4 80.3 72.5 84.0 REMARK 620 N 1 2 3 4 5 DBREF 8C9I A 2 401 UNP P9WPL7 CP141_MYCTU 1 400 SEQRES 1 A 400 MET THR SER THR SER ILE PRO THR PHE PRO PHE ASP ARG SEQRES 2 A 400 PRO VAL PRO THR GLU PRO SER PRO MET LEU SER GLU LEU SEQRES 3 A 400 ARG ASN SER CYS PRO VAL ALA PRO ILE GLU LEU PRO SER SEQRES 4 A 400 GLY HIS THR ALA TRP LEU VAL THR ARG PHE ASP ASP VAL SEQRES 5 A 400 LYS GLY VAL LEU SER ASP LYS ARG PHE SER CYS ARG ALA SEQRES 6 A 400 ALA ALA HIS PRO SER SER PRO PRO PHE VAL PRO PHE VAL SEQRES 7 A 400 GLN LEU CYS PRO SER LEU LEU SER ILE ASP GLY PRO GLN SEQRES 8 A 400 HIS THR ALA ALA ARG ARG LEU LEU ALA GLN GLY LEU ASN SEQRES 9 A 400 PRO GLY PHE ILE ALA ARG MET ARG PRO VAL VAL GLN GLN SEQRES 10 A 400 ILE VAL ASP ASN ALA LEU ASP ASP LEU ALA ALA ALA GLU SEQRES 11 A 400 PRO PRO VAL ASP PHE GLN GLU ILE VAL SER VAL PRO ILE SEQRES 12 A 400 GLY GLU GLN LEU MET ALA LYS LEU LEU GLY VAL GLU PRO SEQRES 13 A 400 LYS THR VAL HIS GLU LEU ALA ALA HIS VAL ASP ALA ALA SEQRES 14 A 400 MET SER VAL CYS GLU ILE GLY ASP GLU GLU VAL SER ARG SEQRES 15 A 400 ARG TRP SER ALA LEU CYS THR MET VAL ILE ASP ILE LEU SEQRES 16 A 400 HIS ARG LYS LEU ALA GLU PRO GLY ASP ASP LEU LEU SER SEQRES 17 A 400 THR ILE ALA GLN ALA ASN ARG GLN GLN SER THR MET THR SEQRES 18 A 400 ASP GLU GLN VAL VAL GLY MET LEU LEU THR VAL VAL ILE SEQRES 19 A 400 GLY GLY VAL ASP THR PRO ILE ALA VAL ILE THR ASN GLY SEQRES 20 A 400 LEU ALA SER LEU LEU HIS HIS ARG ASP GLN TYR GLU ARG SEQRES 21 A 400 LEU VAL GLU ASP PRO GLY ARG VAL ALA ARG ALA VAL GLU SEQRES 22 A 400 GLU ILE VAL ARG PHE ASN PRO ALA THR GLU ILE GLU HIS SEQRES 23 A 400 LEU ARG VAL VAL THR GLU ASP VAL VAL ILE ALA GLY THR SEQRES 24 A 400 ALA LEU SER ALA GLY SER PRO ALA PHE THR SER ILE THR SEQRES 25 A 400 SER ALA ASN ARG ASP SER ASP GLN PHE LEU ASP PRO ASP SEQRES 26 A 400 GLU PHE ASP VAL GLU ARG ASN PRO ASN GLU HIS ILE ALA SEQRES 27 A 400 PHE GLY TYR GLY PRO HIS ALA CYS PRO ALA SER ALA TYR SEQRES 28 A 400 SER ARG MET CYS LEU THR THR PHE PHE THR SER LEU THR SEQRES 29 A 400 GLN ARG PHE PRO GLN LEU GLN LEU ALA ARG PRO PHE GLU SEQRES 30 A 400 ASP LEU GLU ARG ARG GLY LYS GLY LEU HIS SER VAL GLY SEQRES 31 A 400 ILE LYS GLU LEU LEU VAL THR TRP PRO THR HET HEB A 501 73 HETNAM HEB HEME B/C HETSYN HEB HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX HETSYN 2 HEB CONTAINING FE) FORMUL 2 HEB C34 H34 FE N4 O4 FORMUL 3 HOH *174(H2 O) HELIX 1 AA1 SER A 21 ASN A 29 1 9 HELIX 2 AA2 ARG A 49 SER A 58 1 10 HELIX 3 AA3 CYS A 64 HIS A 69 1 6 HELIX 4 AA4 VAL A 76 CYS A 82 1 7 HELIX 5 AA5 SER A 84 ILE A 88 5 5 HELIX 6 AA6 ASP A 89 LEU A 104 1 16 HELIX 7 AA7 ASN A 105 ALA A 130 1 26 HELIX 8 AA8 PHE A 136 VAL A 140 1 5 HELIX 9 AA9 VAL A 140 GLY A 154 1 15 HELIX 10 AB1 GLU A 156 MET A 171 1 16 HELIX 11 AB2 GLY A 177 GLU A 202 1 26 HELIX 12 AB3 ASP A 206 SER A 219 1 14 HELIX 13 AB4 THR A 222 VAL A 238 1 17 HELIX 14 AB5 VAL A 238 HIS A 255 1 18 HELIX 15 AB6 HIS A 255 ASP A 265 1 11 HELIX 16 AB7 ARG A 268 ASN A 280 1 13 HELIX 17 AB8 SER A 311 ASN A 316 1 6 HELIX 18 AB9 ALA A 349 PHE A 368 1 20 HELIX 19 AC1 PRO A 376 LEU A 380 5 5 SHEET 1 AA1 5 VAL A 33 GLU A 37 0 SHEET 2 AA1 5 THR A 43 VAL A 47 -1 O ALA A 44 N ILE A 36 SHEET 3 AA1 5 PRO A 307 THR A 310 1 O PHE A 309 N TRP A 45 SHEET 4 AA1 5 ARG A 289 VAL A 291 -1 N ARG A 289 O ALA A 308 SHEET 5 AA1 5 PHE A 62 SER A 63 -1 N SER A 63 O VAL A 290 SHEET 1 AA2 3 VAL A 134 ASP A 135 0 SHEET 2 AA2 3 LEU A 396 THR A 398 -1 O VAL A 397 N VAL A 134 SHEET 3 AA2 3 GLN A 372 LEU A 373 -1 N GLN A 372 O THR A 398 SHEET 1 AA3 2 VAL A 295 ILE A 297 0 SHEET 2 AA3 2 THR A 300 LEU A 302 -1 O LEU A 302 N VAL A 295 LINK SG CYS A 347 FE HEB A 501 1555 1555 2.30 LINK FE HEB A 501 O HOH A 602 1555 1555 2.10 CISPEP 1 PHE A 10 PRO A 11 0 2.68 CISPEP 2 PRO A 132 PRO A 133 0 -0.36 CISPEP 3 ASN A 333 PRO A 334 0 -2.44 CRYST1 95.019 95.019 264.785 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010524 0.006076 0.000000 0.00000 SCALE2 0.000000 0.012152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003777 0.00000