HEADER SIGNALING PROTEIN 27-JAN-23 8CCW TITLE CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH AN ACETYLATED HIV1 TITLE 2 TAT-46-54 SUBSTRATE PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSIRT3,REGULATORY PROTEIN SIR2 HOMOLOG 3,SIR2-LIKE PROTEIN COMPND 5 3; COMPND 6 EC: 2.3.1.286; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN TAT; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: TRANSACTIVATING REGULATORY PROTEIN; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: ACETYLATED AT K50 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT3, SIR2L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 11 ORGANISM_TAXID: 11676 KEYWDS SIRTUIN, SUBSTRATE, HIV, TAT, COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.S.ADOLPH,C.STEEGBORN REVDAT 2 07-FEB-24 8CCW 1 REMARK REVDAT 1 10-MAY-23 8CCW 0 JRNL AUTH R.S.ADOLPH,E.BECK,K.SCHWEIMER,A.DI FONZO,M.WEYAND,P.ROSCH, JRNL AUTH 2 B.M.WOHRL,C.STEEGBORN JRNL TITL MOLECULAR MECHANISM OF SIRTUIN 1 INHIBITION BY HUMAN JRNL TITL 2 IMMUNODEFICIENCY VIRUS 1 TAT PROTEIN. JRNL REF LIFE V. 13 2023 JRNL REFN ESSN 2075-1729 JRNL PMID 37109478 JRNL DOI 10.3390/LIFE13040949 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3600 - 4.0700 1.00 5942 141 0.1633 0.1910 REMARK 3 2 4.0600 - 3.2300 1.00 5944 143 0.1582 0.1991 REMARK 3 3 3.2300 - 2.8200 1.00 5913 138 0.1707 0.2046 REMARK 3 4 2.8200 - 2.5600 1.00 5940 143 0.1670 0.1686 REMARK 3 5 2.5600 - 2.3800 1.00 5936 138 0.1686 0.1665 REMARK 3 6 2.3800 - 2.2400 1.00 5935 139 0.1710 0.1924 REMARK 3 7 2.2400 - 2.1300 1.00 5896 141 0.1760 0.2745 REMARK 3 8 2.1300 - 2.0300 1.00 5948 139 0.1836 0.1812 REMARK 3 9 2.0300 - 1.9500 1.00 5954 142 0.2192 0.2715 REMARK 3 10 1.9500 - 1.8900 1.00 5920 137 0.2325 0.2425 REMARK 3 11 1.8900 - 1.8300 1.00 5912 140 0.2504 0.2756 REMARK 3 12 1.8300 - 1.7800 1.00 5976 142 0.2729 0.2820 REMARK 3 13 1.7800 - 1.7300 1.00 5958 141 0.3179 0.3394 REMARK 3 14 1.7300 - 1.6900 1.00 5856 133 0.3751 0.4202 REMARK 3 15 1.6900 - 1.6500 0.98 5865 140 0.4454 0.5210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.287 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2302 REMARK 3 ANGLE : 1.382 3134 REMARK 3 CHIRALITY : 0.096 353 REMARK 3 PLANARITY : 0.010 409 REMARK 3 DIHEDRAL : 20.397 867 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292128200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47332 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 39.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FVT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML HUMAN SIRT3-(118-399) IN 20 REMARK 280 MM TRIS/HCL, PH 8.0, 150 MM NACL, 5% (V/V) GLYCEROL, 1 MM TCEP REMARK 280 WERE INCUBATED WITH 2 MM AC-TAT-46-54 FOR 60 MIN AT 293.15 K. REMARK 280 THE COMPLEX WAS CRYSTALLIZED USING THE SITTING-DROP VAPOR- REMARK 280 DIFFUSION METHOD AT 293.15 K WITH 100 MM MES, PH 6.0, 30% (W/V) REMARK 280 PEG 200, 5% (W/V) PEG 3000 AS RESERVOIR SOLUTION., VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.78800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.78800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.36050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.36050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.78800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.36050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.88000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.78800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.36050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.88000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 673 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 118 REMARK 465 ASP A 119 REMARK 465 LYS A 120 REMARK 465 ASP A 395 REMARK 465 GLY A 396 REMARK 465 PRO A 397 REMARK 465 ASP A 398 REMARK 465 LYS A 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 592 O HOH A 752 1.94 REMARK 500 O HOH A 633 O HOH A 681 1.96 REMARK 500 O HOH A 710 O HOH A 758 2.00 REMARK 500 O HOH A 726 O HOH A 764 2.03 REMARK 500 NH1 ARG A 345 O HOH A 501 2.03 REMARK 500 O HOH A 637 O HOH A 712 2.06 REMARK 500 O HOH A 725 O HOH A 765 2.09 REMARK 500 O HOH A 518 O HOH A 726 2.10 REMARK 500 O HOH A 685 O HOH A 697 2.10 REMARK 500 O HOH A 638 O HOH B 108 2.11 REMARK 500 OE1 GLU A 177 O HOH A 502 2.11 REMARK 500 O HOH A 714 O HOH A 747 2.13 REMARK 500 O HOH A 741 O HOH A 775 2.13 REMARK 500 O HOH A 710 O HOH A 764 2.15 REMARK 500 O HOH A 614 O HOH A 753 2.16 REMARK 500 O HOH A 591 O HOH A 707 2.17 REMARK 500 O HOH A 676 O HOH A 748 2.17 REMARK 500 O HOH A 551 O HOH A 591 2.18 REMARK 500 O HOH A 772 O HOH B 109 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 555 O HOH A 670 8445 2.16 REMARK 500 O HOH A 642 O HOH A 642 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 279 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 172 33.59 -99.11 REMARK 500 ASN A 207 -169.38 -116.80 REMARK 500 PRO A 289 151.25 -47.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 256 SG REMARK 620 2 CYS A 259 SG 108.3 REMARK 620 3 CYS A 280 SG 109.0 109.0 REMARK 620 4 CYS A 283 SG 94.8 119.7 114.6 REMARK 620 N 1 2 3 DBREF 8CCW A 118 399 UNP Q9NTG7 SIR3_HUMAN 118 399 DBREF 8CCW B 46 54 UNP P12506 TAT_HV1Z2 46 54 SEQRES 1 A 282 SER ASP LYS GLY LYS LEU SER LEU GLN ASP VAL ALA GLU SEQRES 2 A 282 LEU ILE ARG ALA ARG ALA CYS GLN ARG VAL VAL VAL MET SEQRES 3 A 282 VAL GLY ALA GLY ILE SER THR PRO SER GLY ILE PRO ASP SEQRES 4 A 282 PHE ARG SER PRO GLY SER GLY LEU TYR SER ASN LEU GLN SEQRES 5 A 282 GLN TYR ASP LEU PRO TYR PRO GLU ALA ILE PHE GLU LEU SEQRES 6 A 282 PRO PHE PHE PHE HIS ASN PRO LYS PRO PHE PHE THR LEU SEQRES 7 A 282 ALA LYS GLU LEU TYR PRO GLY ASN TYR LYS PRO ASN VAL SEQRES 8 A 282 THR HIS TYR PHE LEU ARG LEU LEU HIS ASP LYS GLY LEU SEQRES 9 A 282 LEU LEU ARG LEU TYR THR GLN ASN ILE ASP GLY LEU GLU SEQRES 10 A 282 ARG VAL SER GLY ILE PRO ALA SER LYS LEU VAL GLU ALA SEQRES 11 A 282 HIS GLY THR PHE ALA SER ALA THR CYS THR VAL CYS GLN SEQRES 12 A 282 ARG PRO PHE PRO GLY GLU ASP ILE ARG ALA ASP VAL MET SEQRES 13 A 282 ALA ASP ARG VAL PRO ARG CYS PRO VAL CYS THR GLY VAL SEQRES 14 A 282 VAL LYS PRO ASP ILE VAL PHE PHE GLY GLU PRO LEU PRO SEQRES 15 A 282 GLN ARG PHE LEU LEU HIS VAL VAL ASP PHE PRO MET ALA SEQRES 16 A 282 ASP LEU LEU LEU ILE LEU GLY THR SER LEU GLU VAL GLU SEQRES 17 A 282 PRO PHE ALA SER LEU THR GLU ALA VAL ARG SER SER VAL SEQRES 18 A 282 PRO ARG LEU LEU ILE ASN ARG ASP LEU VAL GLY PRO LEU SEQRES 19 A 282 ALA TRP HIS PRO ARG SER ARG ASP VAL ALA GLN LEU GLY SEQRES 20 A 282 ASP VAL VAL HIS GLY VAL GLU SER LEU VAL GLU LEU LEU SEQRES 21 A 282 GLY TRP THR GLU GLU MET ARG ASP LEU VAL GLN ARG GLU SEQRES 22 A 282 THR GLY LYS LEU ASP GLY PRO ASP LYS SEQRES 1 B 9 SER TYR GLY ARG ALY LYS ARG ARG GLN MODRES 8CCW ALY B 50 LYS MODIFIED RESIDUE HET ALY B 50 12 HET ZN A 401 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *287(H2 O) HELIX 1 AA1 SER A 124 ALA A 134 1 11 HELIX 2 AA2 ALA A 146 GLY A 153 5 8 HELIX 3 AA3 SER A 162 GLN A 170 1 9 HELIX 4 AA4 TYR A 175 PHE A 180 5 6 HELIX 5 AA5 GLU A 181 ASN A 188 1 8 HELIX 6 AA6 PRO A 189 TYR A 200 1 12 HELIX 7 AA7 ASN A 207 LYS A 219 1 13 HELIX 8 AA8 GLY A 232 SER A 237 1 6 HELIX 9 AA9 PRO A 240 SER A 242 5 3 HELIX 10 AB1 ILE A 268 ALA A 274 1 7 HELIX 11 AB2 PRO A 299 LEU A 303 5 5 HELIX 12 AB3 LEU A 304 ALA A 312 1 9 HELIX 13 AB4 PHE A 327 ALA A 333 5 7 HELIX 14 AB5 GLY A 349 HIS A 354 1 6 HELIX 15 AB6 ASP A 365 GLY A 378 1 14 HELIX 16 AB7 TRP A 379 LEU A 394 1 16 SHEET 1 AA1 6 LEU A 244 GLU A 246 0 SHEET 2 AA1 6 LEU A 222 THR A 227 1 N THR A 227 O VAL A 245 SHEET 3 AA1 6 VAL A 140 VAL A 144 1 N VAL A 142 O TYR A 226 SHEET 4 AA1 6 LEU A 314 LEU A 318 1 O LEU A 318 N MET A 143 SHEET 5 AA1 6 ARG A 340 ASN A 344 1 O LEU A 341 N LEU A 315 SHEET 6 AA1 6 ASP A 359 LEU A 363 1 O GLN A 362 N LEU A 342 SHEET 1 AA2 3 PRO A 262 PRO A 264 0 SHEET 2 AA2 3 GLY A 249 CYS A 256 -1 N ALA A 254 O PHE A 263 SHEET 3 AA2 3 VAL A 287 ILE A 291 -1 O ASP A 290 N SER A 253 SHEET 1 AA3 2 VAL A 324 GLU A 325 0 SHEET 2 AA3 2 LYS B 51 ARG B 52 -1 O LYS B 51 N GLU A 325 LINK C ARG B 49 N ALY B 50 1555 1555 1.33 LINK C ALY B 50 N LYS B 51 1555 1555 1.33 LINK SG CYS A 256 ZN ZN A 401 1555 1555 2.39 LINK SG CYS A 259 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 280 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 283 ZN ZN A 401 1555 1555 2.29 CISPEP 1 GLU A 325 PRO A 326 0 1.48 CRYST1 78.721 127.760 77.576 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012891 0.00000