HEADER OXIDOREDUCTASE 27-JAN-23 8CCX TITLE HUMAN SOD1 IN COMPLEX WITH S-XL6 CROSS-LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, F; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE 1,HSOD1; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SOD1, AMYOTROPHIC LATERAL SCLEROSIS, ALS, PHARMACOLOGICAL CHAPERONE, KEYWDS 2 CROSS-LINKING, STABILIZATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,A.HOSSAIN,J.N.AGAR,S.S.HASNAIN REVDAT 2 07-FEB-24 8CCX 1 JRNL REVDAT 1 13-DEC-23 8CCX 0 JRNL AUTH M.A.HOSSAIN,R.SARIN,D.P.DONNELLY,B.C.MILLER,A.WEISS, JRNL AUTH 2 L.MCALARY,S.V.ANTONYUK,J.P.SALISBURY,J.AMIN,J.B.CONWAY, JRNL AUTH 3 S.S.WATSON,J.N.WINTERS,Y.XU,N.ALAM,R.R.BRAHME,H.SHAHBAZIAN, JRNL AUTH 4 D.SIVASANKAR,S.PADMAKUMAR,A.SATTAROVA,A.C.PONMUDIYAN, JRNL AUTH 5 T.GAWDE,D.E.VERRILL,W.YANG,S.KANNAPADI,L.D.PLANT, JRNL AUTH 6 J.R.AUCLAIR,L.MAKOWSKI,G.A.PETSKO,D.RINGE,N.Y.R.AGAR, JRNL AUTH 7 D.J.GREENBLATT,M.J.ONDRECHEN,Y.CHEN,J.J.YERBURY,R.MANETSCH, JRNL AUTH 8 S.S.HASNAIN,R.H.BROWN JR.,J.N.AGAR JRNL TITL EVALUATING PROTEIN CROSS-LINKING AS A THERAPEUTIC STRATEGY JRNL TITL 2 TO STABILIZE SOD1 VARIANTS IN A MOUSE MODEL OF FAMILIAL ALS. JRNL REF PLOS BIOL. V. 22 02462 2024 JRNL REFN ESSN 1545-7885 JRNL PMID 38289969 JRNL DOI 10.1371/JOURNAL.PBIO.3002462 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 28270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.952 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1936 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05400 REMARK 3 B22 (A**2) : -0.35900 REMARK 3 B33 (A**2) : 0.14900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2335 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2189 ; 0.010 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3154 ; 1.605 ; 1.629 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5096 ; 1.439 ; 1.601 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 7.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.771 ;24.630 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;12.955 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.865 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2712 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 464 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 469 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 73 ; 0.234 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1096 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 169 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.172 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1235 ; 1.660 ; 1.846 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1234 ; 1.660 ; 1.846 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1543 ; 2.412 ; 2.766 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1544 ; 2.411 ; 2.765 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 2.184 ; 2.114 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1101 ; 2.183 ; 2.114 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1605 ; 3.293 ; 3.053 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1606 ; 3.292 ; 3.054 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8CCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292128287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28274 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.665 REMARK 200 RESOLUTION RANGE LOW (A) : 37.362 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 83.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2C9V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M AMMONIUM SULPHATE, 150MM NACL, REMARK 280 SODIUM ACETATE PH 4.75, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.01000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET F 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 129 HG SER A 134 1.20 REMARK 500 H GLY A 129 HG SER A 134 1.22 REMARK 500 H CYS F 57 H22 DMS F 205 1.26 REMARK 500 H GLY F 129 HG SER F 134 1.33 REMARK 500 H ALA F 55 HG SER F 59 1.35 REMARK 500 NE2 HIS F 120 ZN ZN F 202 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 58.70 -143.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 434 DISTANCE = 6.01 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 376 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 153.0 REMARK 620 3 HIS A 120 NE2 100.1 105.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 114.5 REMARK 620 3 HIS A 120 NE2 92.3 116.8 REMARK 620 4 SO4 A 204 O4 115.4 111.1 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 103.1 REMARK 620 3 HIS A 80 ND1 112.7 117.9 REMARK 620 4 ASP A 83 OD1 105.6 101.3 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU F 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 46 ND1 REMARK 620 2 HIS F 48 NE2 148.7 REMARK 620 3 HIS F 120 NE2 101.3 107.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 63 ND1 REMARK 620 2 HIS F 71 ND1 103.9 REMARK 620 3 HIS F 80 ND1 113.6 118.6 REMARK 620 4 ASP F 83 OD1 104.6 95.1 118.5 REMARK 620 N 1 2 3 DBREF 8CCX A 0 153 UNP P00441 SODC_HUMAN 1 154 DBREF 8CCX F 0 153 UNP P00441 SODC_HUMAN 1 154 SEQRES 1 A 154 MET ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY SEQRES 2 A 154 PRO VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER SEQRES 3 A 154 ASN GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU SEQRES 4 A 154 THR GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY SEQRES 5 A 154 ASP ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE SEQRES 6 A 154 ASN PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU SEQRES 7 A 154 GLU ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP SEQRES 8 A 154 LYS ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL SEQRES 9 A 154 ILE SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR SEQRES 10 A 154 LEU VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY SEQRES 11 A 154 GLY ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER SEQRES 12 A 154 ARG LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 154 MET ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY SEQRES 2 F 154 PRO VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER SEQRES 3 F 154 ASN GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU SEQRES 4 F 154 THR GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY SEQRES 5 F 154 ASP ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE SEQRES 6 F 154 ASN PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU SEQRES 7 F 154 GLU ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP SEQRES 8 F 154 LYS ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL SEQRES 9 F 154 ILE SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR SEQRES 10 F 154 LEU VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY SEQRES 11 F 154 GLY ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER SEQRES 12 F 154 ARG LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET CU A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET SO4 A 204 5 HET UDI A 205 16 HET CU F 201 1 HET ZN F 202 1 HET ZN F 203 1 HET SO4 F 204 5 HET DMS F 205 10 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM UDI BUTANE-1,4-DITHIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN UDI 1,2-DITHIANE 1-OXIDE (REACTED) FORMUL 3 CU 2(CU 2+) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 7 UDI C4 H10 S2 FORMUL 12 DMS C2 H6 O S FORMUL 13 HOH *272(H2 O) HELIX 1 AA1 GLY A 56 GLY A 61 5 6 HELIX 2 AA2 ASN A 131 THR A 135 5 5 HELIX 3 AA3 GLY F 56 GLY F 61 5 6 HELIX 4 AA4 SER F 107 CYS F 111 5 5 HELIX 5 AA5 ASN F 131 LYS F 136 5 6 SHEET 1 AA1 5 ALA A 95 ASP A 101 0 SHEET 2 AA1 5 VAL A 29 LYS A 36 -1 N ILE A 35 O ALA A 95 SHEET 3 AA1 5 GLN A 15 GLN A 22 -1 N ASN A 19 O TRP A 32 SHEET 4 AA1 5 THR A 2 LYS A 9 -1 N THR A 2 O GLN A 22 SHEET 5 AA1 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 AA2 4 ASP A 83 ALA A 89 0 SHEET 2 AA2 4 GLY A 41 HIS A 48 -1 N GLY A 41 O ALA A 89 SHEET 3 AA2 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AA2 4 ARG A 143 VAL A 148 -1 O ALA A 145 N VAL A 119 SHEET 1 AA3 5 ALA F 95 ASP F 101 0 SHEET 2 AA3 5 VAL F 29 LYS F 36 -1 N GLY F 33 O VAL F 97 SHEET 3 AA3 5 VAL F 14 GLN F 22 -1 N ASN F 19 O TRP F 32 SHEET 4 AA3 5 THR F 2 GLY F 10 -1 N THR F 2 O GLN F 22 SHEET 5 AA3 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 AA4 4 ASP F 83 ALA F 89 0 SHEET 2 AA4 4 GLY F 41 HIS F 48 -1 N GLY F 41 O ALA F 89 SHEET 3 AA4 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 AA4 4 ARG F 143 VAL F 148 -1 O GLY F 147 N LEU F 117 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.08 SSBOND 2 CYS F 57 CYS F 146 1555 1555 2.08 LINK SG CYS A 111 S6 UDI A 205 1555 1555 2.05 LINK S1 UDI A 205 SG CYS F 111 1555 1555 2.02 LINK ND1 HIS A 46 CU A CU A 201 1555 1555 1.94 LINK ND1 HIS A 46 ZN B ZN A 202 1555 1555 2.50 LINK NE2 HIS A 48 CU A CU A 201 1555 1555 2.10 LINK NE2 HIS A 48 ZN B ZN A 202 1555 1555 2.16 LINK ND1 HIS A 63 ZN ZN A 203 1555 1555 2.01 LINK ND1 HIS A 71 ZN ZN A 203 1555 1555 2.15 LINK ND1 HIS A 80 ZN ZN A 203 1555 1555 1.85 LINK OD1 ASP A 83 ZN ZN A 203 1555 1555 1.92 LINK NE2 HIS A 120 CU A CU A 201 1555 1555 2.20 LINK NE2 HIS A 120 ZN B ZN A 202 1555 1555 1.86 LINK ZN B ZN A 202 O4 BSO4 A 204 1555 1555 2.05 LINK ND1 HIS F 46 CU A CU F 201 1555 1555 2.07 LINK NE2 HIS F 48 CU A CU F 201 1555 1555 2.09 LINK NE2 HIS F 48 ZN B ZN F 202 1555 1555 2.20 LINK ND1 HIS F 63 ZN ZN F 203 1555 1555 2.10 LINK ND1 HIS F 71 ZN ZN F 203 1555 1555 2.05 LINK ND1 HIS F 80 ZN ZN F 203 1555 1555 2.03 LINK OD1 ASP F 83 ZN ZN F 203 1555 1555 1.86 LINK NE2 HIS F 120 CU A CU F 201 1555 1555 1.98 CISPEP 1 GLY F 12 PRO F 13 0 4.29 CRYST1 38.810 68.020 50.690 90.00 105.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025767 0.000000 0.007315 0.00000 SCALE2 0.000000 0.014702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020507 0.00000