data_8CDN # _entry.id 8CDN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.367 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8CDN pdb_00008cdn 10.2210/pdb8cdn/pdb WWPDB D_1292128341 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8CDN _pdbx_database_status.recvd_initial_deposition_date 2023-01-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Newman, J.A.' 1 ? 'Gavard, A.E.' 2 ? 'von Delft, F.' 3 ? 'Gileadi, O.' 4 ? 'Bountra, C.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of human Brachyury in complex with a single T box binding element DNA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Newman, J.A.' 1 ? primary 'Gavard, A.E.' 2 ? primary 'von Delft, F.' 3 ? primary 'Gileadi, O.' 4 ? primary 'Bountra, C.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8CDN _cell.details ? _cell.formula_units_Z ? _cell.length_a 63.018 _cell.length_a_esd ? _cell.length_b 63.018 _cell.length_b_esd ? _cell.length_c 218.579 _cell.length_c_esd ? _cell.volume 751733.948 _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8CDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'T-box transcription factor T' 22022.357 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*GP*GP*TP*GP*TP*GP*AP*GP*CP*CP*T)-3') ; 3718.427 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*GP*GP*CP*TP*CP*AP*CP*AP*CP*CP*T)-3') ; 3607.369 1 ? ? ? ? 4 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Brachyury protein,Protein T' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQ APSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAY QNEEITALKIKYNPFAKAFLDAKERSHHHHHH ; ;MGELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQ APSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAY QNEEITALKIKYNPFAKAFLDAKERSHHHHHH ; A ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DT)(DG)(DT)(DG)(DA)(DG)(DC)(DC)(DT)' AGGTGTGAGCCT C ? 3 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DC)(DT)(DC)(DA)(DC)(DA)(DC)(DC)(DT)' AGGCTCACACCT D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 GLU n 1 4 LEU n 1 5 ARG n 1 6 VAL n 1 7 GLY n 1 8 LEU n 1 9 GLU n 1 10 GLU n 1 11 SER n 1 12 GLU n 1 13 LEU n 1 14 TRP n 1 15 LEU n 1 16 ARG n 1 17 PHE n 1 18 LYS n 1 19 GLU n 1 20 LEU n 1 21 THR n 1 22 ASN n 1 23 GLU n 1 24 MET n 1 25 ILE n 1 26 VAL n 1 27 THR n 1 28 LYS n 1 29 ASN n 1 30 GLY n 1 31 ARG n 1 32 ARG n 1 33 MET n 1 34 PHE n 1 35 PRO n 1 36 VAL n 1 37 LEU n 1 38 LYS n 1 39 VAL n 1 40 ASN n 1 41 VAL n 1 42 SER n 1 43 GLY n 1 44 LEU n 1 45 ASP n 1 46 PRO n 1 47 ASN n 1 48 ALA n 1 49 MET n 1 50 TYR n 1 51 SER n 1 52 PHE n 1 53 LEU n 1 54 LEU n 1 55 ASP n 1 56 PHE n 1 57 VAL n 1 58 ALA n 1 59 ALA n 1 60 ASP n 1 61 ASN n 1 62 HIS n 1 63 ARG n 1 64 TRP n 1 65 LYS n 1 66 TYR n 1 67 VAL n 1 68 ASN n 1 69 GLY n 1 70 GLU n 1 71 TRP n 1 72 VAL n 1 73 PRO n 1 74 GLY n 1 75 GLY n 1 76 LYS n 1 77 PRO n 1 78 GLU n 1 79 PRO n 1 80 GLN n 1 81 ALA n 1 82 PRO n 1 83 SER n 1 84 CYS n 1 85 VAL n 1 86 TYR n 1 87 ILE n 1 88 HIS n 1 89 PRO n 1 90 ASP n 1 91 SER n 1 92 PRO n 1 93 ASN n 1 94 PHE n 1 95 GLY n 1 96 ALA n 1 97 HIS n 1 98 TRP n 1 99 MET n 1 100 LYS n 1 101 ALA n 1 102 PRO n 1 103 VAL n 1 104 SER n 1 105 PHE n 1 106 SER n 1 107 LYS n 1 108 VAL n 1 109 LYS n 1 110 LEU n 1 111 THR n 1 112 ASN n 1 113 LYS n 1 114 LEU n 1 115 ASN n 1 116 GLY n 1 117 GLY n 1 118 GLY n 1 119 GLN n 1 120 ILE n 1 121 MET n 1 122 LEU n 1 123 ASN n 1 124 SER n 1 125 LEU n 1 126 HIS n 1 127 LYS n 1 128 TYR n 1 129 GLU n 1 130 PRO n 1 131 ARG n 1 132 ILE n 1 133 HIS n 1 134 ILE n 1 135 VAL n 1 136 ARG n 1 137 VAL n 1 138 GLY n 1 139 GLY n 1 140 PRO n 1 141 GLN n 1 142 ARG n 1 143 MET n 1 144 ILE n 1 145 THR n 1 146 SER n 1 147 HIS n 1 148 CYS n 1 149 PHE n 1 150 PRO n 1 151 GLU n 1 152 THR n 1 153 GLN n 1 154 PHE n 1 155 ILE n 1 156 ALA n 1 157 VAL n 1 158 THR n 1 159 ALA n 1 160 TYR n 1 161 GLN n 1 162 ASN n 1 163 GLU n 1 164 GLU n 1 165 ILE n 1 166 THR n 1 167 ALA n 1 168 LEU n 1 169 LYS n 1 170 ILE n 1 171 LYS n 1 172 TYR n 1 173 ASN n 1 174 PRO n 1 175 PHE n 1 176 ALA n 1 177 LYS n 1 178 ALA n 1 179 PHE n 1 180 LEU n 1 181 ASP n 1 182 ALA n 1 183 LYS n 1 184 GLU n 1 185 ARG n 1 186 SER n 1 187 HIS n 1 188 HIS n 1 189 HIS n 1 190 HIS n 1 191 HIS n 1 192 HIS n 2 1 DA n 2 2 DG n 2 3 DG n 2 4 DT n 2 5 DG n 2 6 DT n 2 7 DG n 2 8 DA n 2 9 DG n 2 10 DC n 2 11 DC n 2 12 DT n 3 1 DA n 3 2 DG n 3 3 DG n 3 4 DC n 3 5 DT n 3 6 DC n 3 7 DA n 3 8 DC n 3 9 DA n 3 10 DC n 3 11 DC n 3 12 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 192 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TBXT, T' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'Homo sapiens' ? 9606 ? 3 1 sample 1 12 'Homo sapiens' ? 9606 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP TBXT_HUMAN O15178 ? 1 ;ELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAP SCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAYQN EEITALKIKYNPFAKAFLDAKERS ; 41 2 PDB 8CDN 8CDN ? 2 ? 1 3 PDB 8CDN 8CDN ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8CDN A 3 ? 186 ? O15178 41 ? 224 ? 41 224 2 2 8CDN C 1 ? 12 ? 8CDN -1 ? 10 ? -1 10 3 3 8CDN D 1 ? 12 ? 8CDN 5 ? 16 ? 5 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8CDN MET A 1 ? UNP O15178 ? ? 'initiating methionine' 39 1 1 8CDN GLY A 2 ? UNP O15178 ? ? 'expression tag' 40 2 1 8CDN HIS A 187 ? UNP O15178 ? ? 'expression tag' 225 3 1 8CDN HIS A 188 ? UNP O15178 ? ? 'expression tag' 226 4 1 8CDN HIS A 189 ? UNP O15178 ? ? 'expression tag' 227 5 1 8CDN HIS A 190 ? UNP O15178 ? ? 'expression tag' 228 6 1 8CDN HIS A 191 ? UNP O15178 ? ? 'expression tag' 229 7 1 8CDN HIS A 192 ? UNP O15178 ? ? 'expression tag' 230 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8CDN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M ammonium acetate -- 0.1M bis-tris pH 5.5 -- 16%(w/v) PEG10000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 278 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-05-18 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9159 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9159 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 72.60 _reflns.entry_id 8CDN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.55 _reflns.d_resolution_low 109 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9158 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 17.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.55 _reflns_shell.d_res_low 2.62 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 666 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.593 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.863 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 81.47 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8CDN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.55 _refine.ls_d_res_low 54.57 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9158 _refine.ls_number_reflns_R_free 736 _refine.ls_number_reflns_R_work 15060 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.77 _refine.ls_percent_reflns_R_free 4.66 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2747 _refine.ls_R_factor_R_free 0.3018 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2733 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.04 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.7359 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3260 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.55 _refine_hist.d_res_low 54.57 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1937 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1449 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0061 ? 2035 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0553 ? 2858 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0660 ? 308 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0086 ? 285 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 29.8209 ? 784 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.55 2.75 . . 142 3029 99.72 . . . . 0.3849 . . . . . . . . . . . 0.3827 'X-RAY DIFFRACTION' 2.75 3.02 . . 162 2982 99.59 . . . . 0.3836 . . . . . . . . . . . 0.4101 'X-RAY DIFFRACTION' 3.02 3.46 . . 138 3004 99.62 . . . . 0.3289 . . . . . . . . . . . 0.4048 'X-RAY DIFFRACTION' 3.46 4.36 . . 140 3037 100.00 . . . . 0.2757 . . . . . . . . . . . 0.3347 'X-RAY DIFFRACTION' 4.36 54.57 . . 154 3008 99.94 . . . . 0.2234 . . . . . . . . . . . 0.2288 # _struct.entry_id 8CDN _struct.title 'Crystal structure of human Brachyury in complex with a single T box binding element DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8CDN _struct_keywords.text 'Brachyury, TBXT, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 10 ? LEU A 20 ? GLU A 48 LEU A 58 1 ? 11 HELX_P HELX_P2 AA2 GLY A 95 ? ALA A 101 ? GLY A 133 ALA A 139 1 ? 7 HELX_P HELX_P3 AA3 PRO A 150 ? GLN A 153 ? PRO A 188 GLN A 191 5 ? 4 HELX_P HELX_P4 AA4 ASN A 162 ? ASN A 173 ? ASN A 200 ASN A 211 1 ? 12 HELX_P HELX_P5 AA5 PRO A 174 ? ASP A 181 ? PRO A 212 ASP A 219 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 12 N3 ? ? C DA -1 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 12 O4 ? ? C DA -1 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 11 N3 ? ? C DG 0 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 11 O2 ? ? C DG 0 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 11 N4 ? ? C DG 0 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 10 N3 ? ? C DG 1 D DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 10 O2 ? ? C DG 1 D DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 10 N4 ? ? C DG 1 D DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 9 N1 ? ? C DT 2 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 9 N6 ? ? C DT 2 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 8 N3 ? ? C DG 3 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 8 O2 ? ? C DG 3 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 8 N4 ? ? C DG 3 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 7 N1 ? ? C DT 4 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 7 N6 ? ? C DT 4 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 6 N3 ? ? C DG 5 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? C DG 5 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 6 N4 ? ? C DG 5 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 5 N3 ? ? C DA 6 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 5 O4 ? ? C DA 6 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 4 N3 ? ? C DG 7 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 4 O2 ? ? C DG 7 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 4 N4 ? ? C DG 7 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 3 N1 ? ? C DC 8 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 3 O6 ? ? C DC 8 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 3 N2 ? ? C DC 8 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 2 N1 ? ? C DC 9 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 2 O6 ? ? C DC 9 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 2 N2 ? ? C DC 9 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 1 N1 ? ? C DT 10 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 1 N6 ? ? C DT 10 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 34 A . ? PHE 72 A PRO 35 A ? PRO 73 A 1 1.05 2 SER 91 A . ? SER 129 A PRO 92 A ? PRO 130 A 1 -6.35 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 4 ? AA4 ? 3 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 5 ? LEU A 8 ? ARG A 43 LEU A 46 AA1 2 LYS A 38 ? SER A 42 ? LYS A 76 SER A 80 AA1 3 VAL A 103 ? SER A 104 ? VAL A 141 SER A 142 AA2 1 GLU A 23 ? ILE A 25 ? GLU A 61 ILE A 63 AA2 2 PHE A 154 ? VAL A 157 ? PHE A 192 VAL A 195 AA2 3 LYS A 127 ? ARG A 136 ? LYS A 165 ARG A 174 AA2 4 MET A 49 ? ALA A 58 ? MET A 87 ALA A 96 AA2 5 ASN A 93 ? PHE A 94 ? ASN A 131 PHE A 132 AA3 1 TYR A 86 ? ILE A 87 ? TYR A 124 ILE A 125 AA3 2 MET A 49 ? ALA A 58 ? MET A 87 ALA A 96 AA3 3 LYS A 127 ? ARG A 136 ? LYS A 165 ARG A 174 AA3 4 MET A 143 ? CYS A 148 ? MET A 181 CYS A 186 AA4 1 ARG A 31 ? ARG A 32 ? ARG A 69 ARG A 70 AA4 2 LYS A 109 ? THR A 111 ? LYS A 147 THR A 149 AA4 3 GLN A 119 ? MET A 121 ? GLN A 157 MET A 159 AA5 1 TRP A 64 ? VAL A 67 ? TRP A 102 VAL A 105 AA5 2 GLU A 70 ? PRO A 73 ? GLU A 108 PRO A 111 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 7 ? N GLY A 45 O ASN A 40 ? O ASN A 78 AA1 2 3 N VAL A 39 ? N VAL A 77 O VAL A 103 ? O VAL A 141 AA2 1 2 N MET A 24 ? N MET A 62 O ILE A 155 ? O ILE A 193 AA2 2 3 O PHE A 154 ? O PHE A 192 N TYR A 128 ? N TYR A 166 AA2 3 4 O HIS A 133 ? O HIS A 171 N LEU A 53 ? N LEU A 91 AA2 4 5 N TYR A 50 ? N TYR A 88 O ASN A 93 ? O ASN A 131 AA3 1 2 O TYR A 86 ? O TYR A 124 N LEU A 54 ? N LEU A 92 AA3 2 3 N LEU A 53 ? N LEU A 91 O HIS A 133 ? O HIS A 171 AA3 3 4 N ILE A 132 ? N ILE A 170 O HIS A 147 ? O HIS A 185 AA4 1 2 N ARG A 31 ? N ARG A 69 O LEU A 110 ? O LEU A 148 AA4 2 3 N THR A 111 ? N THR A 149 O ILE A 120 ? O ILE A 158 AA5 1 2 N VAL A 67 ? N VAL A 105 O GLU A 70 ? O GLU A 108 # _atom_sites.entry_id 8CDN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.015868 _atom_sites.fract_transf_matrix[1][2] 0.009162 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018323 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004575 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 39 ? ? ? A . n A 1 2 GLY 2 40 ? ? ? A . n A 1 3 GLU 3 41 41 GLU GLU A . n A 1 4 LEU 4 42 42 LEU LEU A . n A 1 5 ARG 5 43 43 ARG ARG A . n A 1 6 VAL 6 44 44 VAL VAL A . n A 1 7 GLY 7 45 45 GLY GLY A . n A 1 8 LEU 8 46 46 LEU LEU A . n A 1 9 GLU 9 47 47 GLU GLU A . n A 1 10 GLU 10 48 48 GLU GLU A . n A 1 11 SER 11 49 49 SER SER A . n A 1 12 GLU 12 50 50 GLU GLU A . n A 1 13 LEU 13 51 51 LEU LEU A . n A 1 14 TRP 14 52 52 TRP TRP A . n A 1 15 LEU 15 53 53 LEU LEU A . n A 1 16 ARG 16 54 54 ARG ARG A . n A 1 17 PHE 17 55 55 PHE PHE A . n A 1 18 LYS 18 56 56 LYS LYS A . n A 1 19 GLU 19 57 57 GLU GLU A . n A 1 20 LEU 20 58 58 LEU LEU A . n A 1 21 THR 21 59 59 THR THR A . n A 1 22 ASN 22 60 60 ASN ASN A . n A 1 23 GLU 23 61 61 GLU GLU A . n A 1 24 MET 24 62 62 MET MET A . n A 1 25 ILE 25 63 63 ILE ILE A . n A 1 26 VAL 26 64 64 VAL VAL A . n A 1 27 THR 27 65 65 THR THR A . n A 1 28 LYS 28 66 66 LYS LYS A . n A 1 29 ASN 29 67 67 ASN ASN A . n A 1 30 GLY 30 68 68 GLY GLY A . n A 1 31 ARG 31 69 69 ARG ARG A . n A 1 32 ARG 32 70 70 ARG ARG A . n A 1 33 MET 33 71 71 MET MET A . n A 1 34 PHE 34 72 72 PHE PHE A . n A 1 35 PRO 35 73 73 PRO PRO A . n A 1 36 VAL 36 74 74 VAL VAL A . n A 1 37 LEU 37 75 75 LEU LEU A . n A 1 38 LYS 38 76 76 LYS LYS A . n A 1 39 VAL 39 77 77 VAL VAL A . n A 1 40 ASN 40 78 78 ASN ASN A . n A 1 41 VAL 41 79 79 VAL VAL A . n A 1 42 SER 42 80 80 SER SER A . n A 1 43 GLY 43 81 81 GLY GLY A . n A 1 44 LEU 44 82 82 LEU LEU A . n A 1 45 ASP 45 83 83 ASP ASP A . n A 1 46 PRO 46 84 84 PRO PRO A . n A 1 47 ASN 47 85 85 ASN ASN A . n A 1 48 ALA 48 86 86 ALA ALA A . n A 1 49 MET 49 87 87 MET MET A . n A 1 50 TYR 50 88 88 TYR TYR A . n A 1 51 SER 51 89 89 SER SER A . n A 1 52 PHE 52 90 90 PHE PHE A . n A 1 53 LEU 53 91 91 LEU LEU A . n A 1 54 LEU 54 92 92 LEU LEU A . n A 1 55 ASP 55 93 93 ASP ASP A . n A 1 56 PHE 56 94 94 PHE PHE A . n A 1 57 VAL 57 95 95 VAL VAL A . n A 1 58 ALA 58 96 96 ALA ALA A . n A 1 59 ALA 59 97 97 ALA ALA A . n A 1 60 ASP 60 98 98 ASP ASP A . n A 1 61 ASN 61 99 99 ASN ASN A . n A 1 62 HIS 62 100 100 HIS HIS A . n A 1 63 ARG 63 101 101 ARG ARG A . n A 1 64 TRP 64 102 102 TRP TRP A . n A 1 65 LYS 65 103 103 LYS LYS A . n A 1 66 TYR 66 104 104 TYR TYR A . n A 1 67 VAL 67 105 105 VAL VAL A . n A 1 68 ASN 68 106 106 ASN ASN A . n A 1 69 GLY 69 107 107 GLY GLY A . n A 1 70 GLU 70 108 108 GLU GLU A . n A 1 71 TRP 71 109 109 TRP TRP A . n A 1 72 VAL 72 110 110 VAL VAL A . n A 1 73 PRO 73 111 111 PRO PRO A . n A 1 74 GLY 74 112 112 GLY GLY A . n A 1 75 GLY 75 113 113 GLY GLY A . n A 1 76 LYS 76 114 114 LYS LYS A . n A 1 77 PRO 77 115 115 PRO PRO A . n A 1 78 GLU 78 116 116 GLU GLU A . n A 1 79 PRO 79 117 117 PRO PRO A . n A 1 80 GLN 80 118 118 GLN GLN A . n A 1 81 ALA 81 119 119 ALA ALA A . n A 1 82 PRO 82 120 120 PRO PRO A . n A 1 83 SER 83 121 121 SER SER A . n A 1 84 CYS 84 122 122 CYS CYS A . n A 1 85 VAL 85 123 123 VAL VAL A . n A 1 86 TYR 86 124 124 TYR TYR A . n A 1 87 ILE 87 125 125 ILE ILE A . n A 1 88 HIS 88 126 126 HIS HIS A . n A 1 89 PRO 89 127 127 PRO PRO A . n A 1 90 ASP 90 128 128 ASP ASP A . n A 1 91 SER 91 129 129 SER SER A . n A 1 92 PRO 92 130 130 PRO PRO A . n A 1 93 ASN 93 131 131 ASN ASN A . n A 1 94 PHE 94 132 132 PHE PHE A . n A 1 95 GLY 95 133 133 GLY GLY A . n A 1 96 ALA 96 134 134 ALA ALA A . n A 1 97 HIS 97 135 135 HIS HIS A . n A 1 98 TRP 98 136 136 TRP TRP A . n A 1 99 MET 99 137 137 MET MET A . n A 1 100 LYS 100 138 138 LYS LYS A . n A 1 101 ALA 101 139 139 ALA ALA A . n A 1 102 PRO 102 140 140 PRO PRO A . n A 1 103 VAL 103 141 141 VAL VAL A . n A 1 104 SER 104 142 142 SER SER A . n A 1 105 PHE 105 143 143 PHE PHE A . n A 1 106 SER 106 144 144 SER SER A . n A 1 107 LYS 107 145 145 LYS LYS A . n A 1 108 VAL 108 146 146 VAL VAL A . n A 1 109 LYS 109 147 147 LYS LYS A . n A 1 110 LEU 110 148 148 LEU LEU A . n A 1 111 THR 111 149 149 THR THR A . n A 1 112 ASN 112 150 150 ASN ASN A . n A 1 113 LYS 113 151 151 LYS LYS A . n A 1 114 LEU 114 152 152 LEU LEU A . n A 1 115 ASN 115 153 153 ASN ASN A . n A 1 116 GLY 116 154 154 GLY GLY A . n A 1 117 GLY 117 155 155 GLY GLY A . n A 1 118 GLY 118 156 156 GLY GLY A . n A 1 119 GLN 119 157 157 GLN GLN A . n A 1 120 ILE 120 158 158 ILE ILE A . n A 1 121 MET 121 159 159 MET MET A . n A 1 122 LEU 122 160 160 LEU LEU A . n A 1 123 ASN 123 161 161 ASN ASN A . n A 1 124 SER 124 162 162 SER SER A . n A 1 125 LEU 125 163 163 LEU LEU A . n A 1 126 HIS 126 164 164 HIS HIS A . n A 1 127 LYS 127 165 165 LYS LYS A . n A 1 128 TYR 128 166 166 TYR TYR A . n A 1 129 GLU 129 167 167 GLU GLU A . n A 1 130 PRO 130 168 168 PRO PRO A . n A 1 131 ARG 131 169 169 ARG ARG A . n A 1 132 ILE 132 170 170 ILE ILE A . n A 1 133 HIS 133 171 171 HIS HIS A . n A 1 134 ILE 134 172 172 ILE ILE A . n A 1 135 VAL 135 173 173 VAL VAL A . n A 1 136 ARG 136 174 174 ARG ARG A . n A 1 137 VAL 137 175 175 VAL VAL A . n A 1 138 GLY 138 176 176 GLY GLY A . n A 1 139 GLY 139 177 177 GLY GLY A . n A 1 140 PRO 140 178 178 PRO PRO A . n A 1 141 GLN 141 179 179 GLN GLN A . n A 1 142 ARG 142 180 180 ARG ARG A . n A 1 143 MET 143 181 181 MET MET A . n A 1 144 ILE 144 182 182 ILE ILE A . n A 1 145 THR 145 183 183 THR THR A . n A 1 146 SER 146 184 184 SER SER A . n A 1 147 HIS 147 185 185 HIS HIS A . n A 1 148 CYS 148 186 186 CYS CYS A . n A 1 149 PHE 149 187 187 PHE PHE A . n A 1 150 PRO 150 188 188 PRO PRO A . n A 1 151 GLU 151 189 189 GLU GLU A . n A 1 152 THR 152 190 190 THR THR A . n A 1 153 GLN 153 191 191 GLN GLN A . n A 1 154 PHE 154 192 192 PHE PHE A . n A 1 155 ILE 155 193 193 ILE ILE A . n A 1 156 ALA 156 194 194 ALA ALA A . n A 1 157 VAL 157 195 195 VAL VAL A . n A 1 158 THR 158 196 196 THR THR A . n A 1 159 ALA 159 197 197 ALA ALA A . n A 1 160 TYR 160 198 198 TYR TYR A . n A 1 161 GLN 161 199 199 GLN GLN A . n A 1 162 ASN 162 200 200 ASN ASN A . n A 1 163 GLU 163 201 201 GLU GLU A . n A 1 164 GLU 164 202 202 GLU GLU A . n A 1 165 ILE 165 203 203 ILE ILE A . n A 1 166 THR 166 204 204 THR THR A . n A 1 167 ALA 167 205 205 ALA ALA A . n A 1 168 LEU 168 206 206 LEU LEU A . n A 1 169 LYS 169 207 207 LYS LYS A . n A 1 170 ILE 170 208 208 ILE ILE A . n A 1 171 LYS 171 209 209 LYS LYS A . n A 1 172 TYR 172 210 210 TYR TYR A . n A 1 173 ASN 173 211 211 ASN ASN A . n A 1 174 PRO 174 212 212 PRO PRO A . n A 1 175 PHE 175 213 213 PHE PHE A . n A 1 176 ALA 176 214 214 ALA ALA A . n A 1 177 LYS 177 215 215 LYS LYS A . n A 1 178 ALA 178 216 216 ALA ALA A . n A 1 179 PHE 179 217 217 PHE PHE A . n A 1 180 LEU 180 218 218 LEU LEU A . n A 1 181 ASP 181 219 219 ASP ASP A . n A 1 182 ALA 182 220 220 ALA ALA A . n A 1 183 LYS 183 221 221 LYS ALA A . n A 1 184 GLU 184 222 ? ? ? A . n A 1 185 ARG 185 223 ? ? ? A . n A 1 186 SER 186 224 ? ? ? A . n A 1 187 HIS 187 225 ? ? ? A . n A 1 188 HIS 188 226 ? ? ? A . n A 1 189 HIS 189 227 ? ? ? A . n A 1 190 HIS 190 228 ? ? ? A . n A 1 191 HIS 191 229 ? ? ? A . n A 1 192 HIS 192 230 ? ? ? A . n B 2 1 DA 1 -1 -1 DA DA C . n B 2 2 DG 2 0 0 DG DG C . n B 2 3 DG 3 1 1 DG DG C . n B 2 4 DT 4 2 2 DT DT C . n B 2 5 DG 5 3 3 DG DG C . n B 2 6 DT 6 4 4 DT DT C . n B 2 7 DG 7 5 5 DG DG C . n B 2 8 DA 8 6 6 DA DA C . n B 2 9 DG 9 7 7 DG DG C . n B 2 10 DC 10 8 8 DC DC C . n B 2 11 DC 11 9 9 DC DC C . n B 2 12 DT 12 10 10 DT DT C . n C 3 1 DA 1 5 5 DA DA D . n C 3 2 DG 2 6 6 DG DG D . n C 3 3 DG 3 7 7 DG DG D . n C 3 4 DC 4 8 8 DC DC D . n C 3 5 DT 5 9 9 DT DT D . n C 3 6 DC 6 10 10 DC DC D . n C 3 7 DA 7 11 11 DA DA D . n C 3 8 DC 8 12 12 DC DC D . n C 3 9 DA 9 13 13 DA DA D . n C 3 10 DC 10 14 14 DC DC D . n C 3 11 DC 11 15 15 DC DC D . n C 3 12 DT 12 16 16 DT DT D . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email joseph.newman@cmd.ox.ac.uk _pdbx_contact_author.name_first joseph _pdbx_contact_author.name_last Newman _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4488-0516 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3100 ? 1 MORE -26 ? 1 'SSA (A^2)' 12560 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-03-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x-y,x,z+1/6 3 y,-x+y,z+5/6 4 -y,x-y,z+1/3 5 -x+y,-x,z+2/3 6 x-y,-y,-z 7 -x,-x+y,-z+2/3 8 -x,-y,z+1/2 9 y,x,-z+1/3 10 -y,-x,-z+5/6 11 -x+y,y,-z+1/2 12 x,x-y,-z+1/6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLY _pdbx_validate_close_contact.auth_seq_id_1 156 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 59 ? ? 62.35 101.93 2 1 ASN A 106 ? ? 30.33 68.24 3 1 LYS A 114 ? ? 54.28 71.05 4 1 GLN A 118 ? ? -42.74 150.89 5 1 PHE A 143 ? ? -93.81 53.90 6 1 LEU A 152 ? ? -68.90 56.69 7 1 MET A 181 ? ? -176.29 135.34 8 1 ASP A 219 ? ? -62.12 40.05 9 1 ALA A 220 ? ? -56.27 106.69 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 221 ? CG ? A LYS 183 CG 2 1 Y 1 A LYS 221 ? CD ? A LYS 183 CD 3 1 Y 1 A LYS 221 ? CE ? A LYS 183 CE 4 1 Y 1 A LYS 221 ? NZ ? A LYS 183 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 39 ? A MET 1 2 1 Y 1 A GLY 40 ? A GLY 2 3 1 Y 1 A GLU 222 ? A GLU 184 4 1 Y 1 A ARG 223 ? A ARG 185 5 1 Y 1 A SER 224 ? A SER 186 6 1 Y 1 A HIS 225 ? A HIS 187 7 1 Y 1 A HIS 226 ? A HIS 188 8 1 Y 1 A HIS 227 ? A HIS 189 9 1 Y 1 A HIS 228 ? A HIS 190 10 1 Y 1 A HIS 229 ? A HIS 191 11 1 Y 1 A HIS 230 ? A HIS 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8CDN 'double helix' 8CDN 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 12 1_555 0.092 -0.276 -0.009 -5.294 -4.745 8.220 1 C_DA-1:DT16_D C -1 ? D 16 ? 20 1 1 B DG 2 1_555 C DC 11 1_555 -0.176 -0.158 0.082 1.195 -7.742 3.729 2 C_DG0:DC15_D C 0 ? D 15 ? 19 1 1 B DG 3 1_555 C DC 10 1_555 -0.204 -0.111 0.331 1.268 -9.154 0.489 3 C_DG1:DC14_D C 1 ? D 14 ? 19 1 1 B DT 4 1_555 C DA 9 1_555 -0.057 -0.210 -0.054 -6.735 -9.675 1.481 4 C_DT2:DA13_D C 2 ? D 13 ? 20 1 1 B DG 5 1_555 C DC 8 1_555 -0.152 -0.226 -0.415 -0.946 1.839 -0.931 5 C_DG3:DC12_D C 3 ? D 12 ? 19 1 1 B DT 6 1_555 C DA 7 1_555 -0.076 -0.158 0.249 1.643 -2.171 -1.248 6 C_DT4:DA11_D C 4 ? D 11 ? 20 1 1 B DG 7 1_555 C DC 6 1_555 -0.161 -0.149 0.241 1.567 -3.008 -0.848 7 C_DG5:DC10_D C 5 ? D 10 ? 19 1 1 B DA 8 1_555 C DT 5 1_555 0.082 -0.219 0.315 -0.457 -3.265 4.274 8 C_DA6:DT9_D C 6 ? D 9 ? 20 1 1 B DG 9 1_555 C DC 4 1_555 -0.211 -0.117 0.120 -2.343 -6.278 0.768 9 C_DG7:DC8_D C 7 ? D 8 ? 19 1 1 B DC 10 1_555 C DG 3 1_555 0.267 -0.103 -0.177 -2.586 -6.102 2.863 10 C_DC8:DG7_D C 8 ? D 7 ? 19 1 1 B DC 11 1_555 C DG 2 1_555 0.156 -0.172 -0.114 4.972 0.486 0.141 11 C_DC9:DG6_D C 9 ? D 6 ? 19 1 1 B DT 12 1_555 C DA 1 1_555 -0.168 -0.215 0.198 6.435 -11.634 1.809 12 C_DT10:DA5_D C 10 ? D 5 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 12 1_555 B DG 2 1_555 C DC 11 1_555 -0.081 -0.762 3.165 -0.895 4.349 32.416 -2.069 -0.004 3.041 7.745 1.593 32.710 1 CC_DA-1DG0:DC15DT16_DD C -1 ? D 16 ? C 0 ? D 15 ? 1 B DG 2 1_555 C DC 11 1_555 B DG 3 1_555 C DC 10 1_555 -0.889 -0.562 3.192 -4.919 -2.143 38.302 -0.587 0.740 3.303 -3.246 7.452 38.662 2 CC_DG0DG1:DC14DC15_DD C 0 ? D 15 ? C 1 ? D 14 ? 1 B DG 3 1_555 C DC 10 1_555 B DT 4 1_555 C DA 9 1_555 -0.747 -0.740 3.512 3.129 -2.767 33.103 -0.797 1.858 3.478 -4.832 -5.465 33.358 3 CC_DG1DT2:DA13DC14_DD C 1 ? D 14 ? C 2 ? D 13 ? 1 B DT 4 1_555 C DA 9 1_555 B DG 5 1_555 C DC 8 1_555 0.176 1.059 3.455 4.048 6.024 32.163 0.750 0.441 3.584 10.703 -7.192 32.951 4 CC_DT2DG3:DC12DA13_DD C 2 ? D 13 ? C 3 ? D 12 ? 1 B DG 5 1_555 C DC 8 1_555 B DT 6 1_555 C DA 7 1_555 -0.418 -0.633 3.251 -2.541 3.083 32.186 -1.669 0.307 3.201 5.534 4.562 32.426 5 CC_DG3DT4:DA11DC12_DD C 3 ? D 12 ? C 4 ? D 11 ? 1 B DT 6 1_555 C DA 7 1_555 B DG 7 1_555 C DC 6 1_555 0.621 0.503 3.238 -0.309 6.294 35.165 -0.093 -1.057 3.271 10.315 0.506 35.708 6 CC_DT4DG5:DC10DA11_DD C 4 ? D 11 ? C 5 ? D 10 ? 1 B DG 7 1_555 C DC 6 1_555 B DA 8 1_555 C DT 5 1_555 0.145 0.000 3.465 -3.484 2.766 38.169 -0.365 -0.679 3.431 4.212 5.305 38.418 7 CC_DG5DA6:DT9DC10_DD C 5 ? D 10 ? C 6 ? D 9 ? 1 B DA 8 1_555 C DT 5 1_555 B DG 9 1_555 C DC 4 1_555 -0.237 -0.760 3.275 -2.267 1.432 30.024 -1.753 -0.006 3.244 2.757 4.365 30.140 8 CC_DA6DG7:DC8DT9_DD C 6 ? D 9 ? C 7 ? D 8 ? 1 B DG 9 1_555 C DC 4 1_555 B DC 10 1_555 C DG 3 1_555 -0.144 -0.700 3.181 -1.609 2.870 36.506 -1.493 0.016 3.122 4.570 2.562 36.649 9 CC_DG7DC8:DG7DC8_DD C 7 ? D 8 ? C 8 ? D 7 ? 1 B DC 10 1_555 C DG 3 1_555 B DC 11 1_555 C DG 2 1_555 -0.395 -0.044 3.191 1.151 6.189 31.997 -1.127 0.899 3.112 11.093 -2.063 32.594 10 CC_DC8DC9:DG6DG7_DD C 8 ? D 7 ? C 9 ? D 6 ? 1 B DC 11 1_555 C DG 2 1_555 B DT 12 1_555 C DA 1 1_555 0.448 -0.366 3.357 -0.927 5.266 34.086 -1.447 -0.901 3.253 8.915 1.570 34.491 11 CC_DC9DT10:DA5DG6_DD C 9 ? D 6 ? C 10 ? D 5 ? # _pdbx_audit_support.funding_organization 'The Mark Foundation' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6f58 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 61 2 2' _space_group.name_Hall 'P 61 2 (x,y,z+5/12)' _space_group.IT_number 178 _space_group.crystal_system hexagonal _space_group.id 1 #