HEADER CARBOHYDRATE 01-FEB-23 8CE3 TITLE CRYSTAL STRUCTURE OF MGAT5 (ALPHA-1,6-MANNOSYLGLYCOPROTEIN 6-BETA-N- TITLE 2 ACETYLGLUCOSAMINYLTRANSFERASE V) LUMINAL DOMAIN WITH A LYS329-ILE345 TITLE 3 LOOP TRUNCATION, IN COMPLEX WITH 3D FRAGMENT 2548 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,6-MANNOSYLGLYCOPROTEIN 6-BETA-N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE A; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE V, COMPND 6 GLCNAC-T V,GNT-V,MANNOSIDE ACETYLGLUCOSAMINYLTRANSFERASE 5,N- COMPND 7 ACETYLGLUCOSAMINYL-TRANSFERASE V; COMPND 8 EC: 2.4.1.155; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MGAT5, GGNT5; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS GLYCOSYLTRANSFERASE, FRAGMENT, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.GILIO,J.F.DARBY,L.WU,G.J.DAVIES REVDAT 1 21-FEB-24 8CE3 0 JRNL AUTH T.D.DOWNES,S.P.JONES,J.D.FIRTH,J.F.DARBY,A.K.GILIO, JRNL AUTH 2 H.F.KLEIN,D.C.BLAKEMORE,C.DE FUSCO,S.D.ROUGHLEY,L.R.VIDLER, JRNL AUTH 3 M.A.WHATTON,A.J.A.WOOLFORD,G.L.WRIGLEY,R.E.HUBBARD,L.WU, JRNL AUTH 4 G.J.DAVIES,P.O'BRIEN JRNL TITL A MODULAR 3-D FRAGMENT COLLECTION: DESIGN, SYNTHESIS AND JRNL TITL 2 SCREENING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 80017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.743 REMARK 3 FREE R VALUE TEST SET COUNT : 3795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 259 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25800 REMARK 3 B22 (A**2) : -0.06200 REMARK 3 B33 (A**2) : -1.53800 REMARK 3 B12 (A**2) : 1.02500 REMARK 3 B13 (A**2) : 0.56700 REMARK 3 B23 (A**2) : 1.78000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8332 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 7912 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11245 ; 1.510 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18271 ; 0.487 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 983 ; 6.898 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ; 6.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1482 ;15.187 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1203 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9438 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1911 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1625 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 66 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3944 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 355 ; 0.265 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3959 ; 5.456 ; 5.358 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3959 ; 5.456 ; 5.358 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4933 ; 6.839 ; 9.609 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4934 ; 6.839 ; 9.609 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4373 ; 6.459 ; 5.962 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4374 ; 6.459 ; 5.963 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6312 ; 9.087 ;10.670 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6313 ; 9.087 ;10.671 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 214 A 728 1 REMARK 3 1 A 214 A 728 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8CE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80017 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 60.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 8.0, 0.3 M LI2SO4, 30 % REMARK 280 (W/V) PEG 3350, 10 % (V/V) ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 419 REMARK 465 ASN A 420 REMARK 465 SER A 421 REMARK 465 SER A 422 REMARK 465 ASP A 423 REMARK 465 ILE A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 ILE A 427 REMARK 465 ASN A 428 REMARK 465 GLU A 429 REMARK 465 GLY A 468 REMARK 465 SER A 469 REMARK 465 SER A 470 REMARK 465 GLY A 615 REMARK 465 GLN A 616 REMARK 465 VAL A 617 REMARK 465 GLY B 282 REMARK 465 PHE B 283 REMARK 465 LYS B 284 REMARK 465 ILE B 285 REMARK 465 ALA B 286 REMARK 465 GLU B 287 REMARK 465 THR B 288 REMARK 465 ALA B 289 REMARK 465 PHE B 290 REMARK 465 SER B 291 REMARK 465 GLY B 292 REMARK 465 GLY B 293 REMARK 465 PRO B 294 REMARK 465 ASN B 420 REMARK 465 SER B 421 REMARK 465 SER B 422 REMARK 465 GLY B 468 REMARK 465 SER B 469 REMARK 465 SER B 470 REMARK 465 GLN B 616 REMARK 465 VAL B 617 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 608 O HOH A 901 2.06 REMARK 500 O HOH A 994 O HOH A 1048 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 614 CA - C - O ANGL. DEV. = -13.9 DEGREES REMARK 500 TYR B 439 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 319 25.39 -143.20 REMARK 500 SER A 353 1.37 -65.42 REMARK 500 PHE A 413 -175.96 -174.03 REMARK 500 ASN A 448 34.51 73.74 REMARK 500 GLU A 507 -136.26 64.83 REMARK 500 ILE A 558 -64.72 -120.29 REMARK 500 CYS A 613 -63.84 -95.50 REMARK 500 ARG A 706 -47.85 -132.70 REMARK 500 MET B 229 79.76 -107.70 REMARK 500 ALA B 319 27.40 -141.22 REMARK 500 PHE B 413 -177.29 -173.56 REMARK 500 LEU B 645 -169.52 -116.60 REMARK 500 ASP B 726 30.15 -96.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 316 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8CE3 A 214 728 UNP Q09328 MGT5A_HUMAN 214 741 DBREF 8CE3 B 214 728 UNP Q09328 MGT5A_HUMAN 214 741 SEQADV 8CE3 A UNP Q09328 LYS 329 DELETION SEQADV 8CE3 A UNP Q09328 LYS 330 DELETION SEQADV 8CE3 A UNP Q09328 VAL 331 DELETION SEQADV 8CE3 A UNP Q09328 VAL 332 DELETION SEQADV 8CE3 A UNP Q09328 GLY 333 DELETION SEQADV 8CE3 A UNP Q09328 ASN 334 DELETION SEQADV 8CE3 A UNP Q09328 ARG 335 DELETION SEQADV 8CE3 A UNP Q09328 SER 336 DELETION SEQADV 8CE3 A UNP Q09328 GLY 337 DELETION SEQADV 8CE3 A UNP Q09328 CYS 338 DELETION SEQADV 8CE3 A UNP Q09328 PRO 339 DELETION SEQADV 8CE3 A UNP Q09328 THR 340 DELETION SEQADV 8CE3 A UNP Q09328 VAL 341 DELETION SEQADV 8CE3 GLY A 330 UNP Q09328 ASP 343 CONFLICT SEQADV 8CE3 GLY A 331 UNP Q09328 ARG 344 CONFLICT SEQADV 8CE3 GLY A 332 UNP Q09328 ILE 345 CONFLICT SEQADV 8CE3 B UNP Q09328 LYS 329 DELETION SEQADV 8CE3 B UNP Q09328 LYS 330 DELETION SEQADV 8CE3 B UNP Q09328 VAL 331 DELETION SEQADV 8CE3 B UNP Q09328 VAL 332 DELETION SEQADV 8CE3 B UNP Q09328 GLY 333 DELETION SEQADV 8CE3 B UNP Q09328 ASN 334 DELETION SEQADV 8CE3 B UNP Q09328 ARG 335 DELETION SEQADV 8CE3 B UNP Q09328 SER 336 DELETION SEQADV 8CE3 B UNP Q09328 GLY 337 DELETION SEQADV 8CE3 B UNP Q09328 CYS 338 DELETION SEQADV 8CE3 B UNP Q09328 PRO 339 DELETION SEQADV 8CE3 B UNP Q09328 THR 340 DELETION SEQADV 8CE3 B UNP Q09328 VAL 341 DELETION SEQADV 8CE3 GLY B 330 UNP Q09328 ASP 343 CONFLICT SEQADV 8CE3 GLY B 331 UNP Q09328 ARG 344 CONFLICT SEQADV 8CE3 GLY B 332 UNP Q09328 ILE 345 CONFLICT SEQRES 1 A 515 SER LEU ALA GLU ILE ARG THR ASP PHE ASN ILE LEU TYR SEQRES 2 A 515 SER MET MET LYS LYS HIS GLU GLU PHE ARG TRP MET ARG SEQRES 3 A 515 LEU ARG ILE ARG ARG MET ALA ASP ALA TRP ILE GLN ALA SEQRES 4 A 515 ILE LYS SER LEU ALA GLU LYS GLN ASN LEU GLU LYS ARG SEQRES 5 A 515 LYS ARG LYS LYS VAL LEU VAL HIS LEU GLY LEU LEU THR SEQRES 6 A 515 LYS GLU SER GLY PHE LYS ILE ALA GLU THR ALA PHE SER SEQRES 7 A 515 GLY GLY PRO LEU GLY GLU LEU VAL GLN TRP SER ASP LEU SEQRES 8 A 515 ILE THR SER LEU TYR LEU LEU GLY HIS ASP ILE ARG ILE SEQRES 9 A 515 SER ALA SER LEU ALA GLU LEU LYS GLU ILE MET GLY GLY SEQRES 10 A 515 GLY GLY VAL GLU LEU ILE TYR ILE ASP ILE VAL GLY LEU SEQRES 11 A 515 ALA GLN PHE LYS LYS THR LEU GLY PRO SER TRP VAL HIS SEQRES 12 A 515 TYR GLN CYS MET LEU ARG VAL LEU ASP SER PHE GLY THR SEQRES 13 A 515 GLU PRO GLU PHE ASN HIS ALA ASN TYR ALA GLN SER LYS SEQRES 14 A 515 GLY HIS LYS THR PRO TRP GLY LYS TRP ASN LEU ASN PRO SEQRES 15 A 515 GLN GLN PHE TYR THR MET PHE PRO HIS THR PRO ASP ASN SEQRES 16 A 515 SER PHE LEU GLY PHE VAL VAL GLU GLN HIS LEU ASN SER SEQRES 17 A 515 SER ASP ILE HIS HIS ILE ASN GLU ILE LYS ARG GLN ASN SEQRES 18 A 515 GLN SER LEU VAL TYR GLY LYS VAL ASP SER PHE TRP LYS SEQRES 19 A 515 ASN LYS LYS ILE TYR LEU ASP ILE ILE HIS THR TYR MET SEQRES 20 A 515 GLU VAL HIS ALA THR VAL TYR GLY SER SER THR LYS ASN SEQRES 21 A 515 ILE PRO SER TYR VAL LYS ASN HIS GLY ILE LEU SER GLY SEQRES 22 A 515 ARG ASP LEU GLN PHE LEU LEU ARG GLU THR LYS LEU PHE SEQRES 23 A 515 VAL GLY LEU GLY PHE PRO TYR GLU GLY PRO ALA PRO LEU SEQRES 24 A 515 GLU ALA ILE ALA ASN GLY CYS ALA PHE LEU ASN PRO LYS SEQRES 25 A 515 PHE ASN PRO PRO LYS SER SER LYS ASN THR ASP PHE PHE SEQRES 26 A 515 ILE GLY LYS PRO THR LEU ARG GLU LEU THR SER GLN HIS SEQRES 27 A 515 PRO TYR ALA GLU VAL PHE ILE GLY ARG PRO HIS VAL TRP SEQRES 28 A 515 THR VAL ASP LEU ASN ASN GLN GLU GLU VAL GLU ASP ALA SEQRES 29 A 515 VAL LYS ALA ILE LEU ASN GLN LYS ILE GLU PRO TYR MET SEQRES 30 A 515 PRO TYR GLU PHE THR CYS GLU GLY MET LEU GLN ARG ILE SEQRES 31 A 515 ASN ALA PHE ILE GLU LYS GLN ASP PHE CYS HIS GLY GLN SEQRES 32 A 515 VAL MET TRP PRO PRO LEU SER ALA LEU GLN VAL LYS LEU SEQRES 33 A 515 ALA GLU PRO GLY GLN SER CYS LYS GLN VAL CYS GLN GLU SEQRES 34 A 515 SER GLN LEU ILE CYS GLU PRO SER PHE PHE GLN HIS LEU SEQRES 35 A 515 ASN LYS ASP LYS ASP MET LEU LYS TYR LYS VAL THR CYS SEQRES 36 A 515 GLN SER SER GLU LEU ALA LYS ASP ILE LEU VAL PRO SER SEQRES 37 A 515 PHE ASP PRO LYS ASN LYS HIS CYS VAL PHE GLN GLY ASP SEQRES 38 A 515 LEU LEU LEU PHE SER CYS ALA GLY ALA HIS PRO ARG HIS SEQRES 39 A 515 GLN ARG VAL CYS PRO CYS ARG ASP PHE ILE LYS GLY GLN SEQRES 40 A 515 VAL ALA LEU CYS LYS ASP CYS LEU SEQRES 1 B 515 SER LEU ALA GLU ILE ARG THR ASP PHE ASN ILE LEU TYR SEQRES 2 B 515 SER MET MET LYS LYS HIS GLU GLU PHE ARG TRP MET ARG SEQRES 3 B 515 LEU ARG ILE ARG ARG MET ALA ASP ALA TRP ILE GLN ALA SEQRES 4 B 515 ILE LYS SER LEU ALA GLU LYS GLN ASN LEU GLU LYS ARG SEQRES 5 B 515 LYS ARG LYS LYS VAL LEU VAL HIS LEU GLY LEU LEU THR SEQRES 6 B 515 LYS GLU SER GLY PHE LYS ILE ALA GLU THR ALA PHE SER SEQRES 7 B 515 GLY GLY PRO LEU GLY GLU LEU VAL GLN TRP SER ASP LEU SEQRES 8 B 515 ILE THR SER LEU TYR LEU LEU GLY HIS ASP ILE ARG ILE SEQRES 9 B 515 SER ALA SER LEU ALA GLU LEU LYS GLU ILE MET GLY GLY SEQRES 10 B 515 GLY GLY VAL GLU LEU ILE TYR ILE ASP ILE VAL GLY LEU SEQRES 11 B 515 ALA GLN PHE LYS LYS THR LEU GLY PRO SER TRP VAL HIS SEQRES 12 B 515 TYR GLN CYS MET LEU ARG VAL LEU ASP SER PHE GLY THR SEQRES 13 B 515 GLU PRO GLU PHE ASN HIS ALA ASN TYR ALA GLN SER LYS SEQRES 14 B 515 GLY HIS LYS THR PRO TRP GLY LYS TRP ASN LEU ASN PRO SEQRES 15 B 515 GLN GLN PHE TYR THR MET PHE PRO HIS THR PRO ASP ASN SEQRES 16 B 515 SER PHE LEU GLY PHE VAL VAL GLU GLN HIS LEU ASN SER SEQRES 17 B 515 SER ASP ILE HIS HIS ILE ASN GLU ILE LYS ARG GLN ASN SEQRES 18 B 515 GLN SER LEU VAL TYR GLY LYS VAL ASP SER PHE TRP LYS SEQRES 19 B 515 ASN LYS LYS ILE TYR LEU ASP ILE ILE HIS THR TYR MET SEQRES 20 B 515 GLU VAL HIS ALA THR VAL TYR GLY SER SER THR LYS ASN SEQRES 21 B 515 ILE PRO SER TYR VAL LYS ASN HIS GLY ILE LEU SER GLY SEQRES 22 B 515 ARG ASP LEU GLN PHE LEU LEU ARG GLU THR LYS LEU PHE SEQRES 23 B 515 VAL GLY LEU GLY PHE PRO TYR GLU GLY PRO ALA PRO LEU SEQRES 24 B 515 GLU ALA ILE ALA ASN GLY CYS ALA PHE LEU ASN PRO LYS SEQRES 25 B 515 PHE ASN PRO PRO LYS SER SER LYS ASN THR ASP PHE PHE SEQRES 26 B 515 ILE GLY LYS PRO THR LEU ARG GLU LEU THR SER GLN HIS SEQRES 27 B 515 PRO TYR ALA GLU VAL PHE ILE GLY ARG PRO HIS VAL TRP SEQRES 28 B 515 THR VAL ASP LEU ASN ASN GLN GLU GLU VAL GLU ASP ALA SEQRES 29 B 515 VAL LYS ALA ILE LEU ASN GLN LYS ILE GLU PRO TYR MET SEQRES 30 B 515 PRO TYR GLU PHE THR CYS GLU GLY MET LEU GLN ARG ILE SEQRES 31 B 515 ASN ALA PHE ILE GLU LYS GLN ASP PHE CYS HIS GLY GLN SEQRES 32 B 515 VAL MET TRP PRO PRO LEU SER ALA LEU GLN VAL LYS LEU SEQRES 33 B 515 ALA GLU PRO GLY GLN SER CYS LYS GLN VAL CYS GLN GLU SEQRES 34 B 515 SER GLN LEU ILE CYS GLU PRO SER PHE PHE GLN HIS LEU SEQRES 35 B 515 ASN LYS ASP LYS ASP MET LEU LYS TYR LYS VAL THR CYS SEQRES 36 B 515 GLN SER SER GLU LEU ALA LYS ASP ILE LEU VAL PRO SER SEQRES 37 B 515 PHE ASP PRO LYS ASN LYS HIS CYS VAL PHE GLN GLY ASP SEQRES 38 B 515 LEU LEU LEU PHE SER CYS ALA GLY ALA HIS PRO ARG HIS SEQRES 39 B 515 GLN ARG VAL CYS PRO CYS ARG ASP PHE ILE LYS GLY GLN SEQRES 40 B 515 VAL ALA LEU CYS LYS ASP CYS LEU HET EDO A 801 4 HET EDO A 802 4 HET UE0 A 803 19 HET SO4 A 804 5 HET SO4 A 805 5 HET SO4 A 806 5 HET SO4 A 807 5 HET SO4 A 808 5 HET SO4 A 809 5 HET SO4 A 810 5 HET EDO A 811 4 HET EDO A 812 4 HET EDO A 813 4 HET EDO A 814 4 HET EDO A 815 4 HET SO4 B 801 5 HET SO4 B 802 5 HET SO4 B 803 5 HET SO4 B 804 5 HET SO4 B 805 5 HET SO4 B 806 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM UE0 (3~{S})-1-ETHANOYL-3-(4-METHYLPHENYL)PIPERIDINE-3- HETNAM 2 UE0 CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 7(C2 H6 O2) FORMUL 5 UE0 C15 H19 N O3 FORMUL 6 SO4 13(O4 S 2-) FORMUL 24 HOH *349(H2 O) HELIX 1 AA1 PHE A 222 LYS A 230 1 9 HELIX 2 AA2 LYS A 231 GLU A 234 5 4 HELIX 3 AA3 PHE A 235 GLN A 260 1 26 HELIX 4 AA4 GLY A 275 GLY A 282 5 8 HELIX 5 AA5 LYS A 284 GLY A 293 5 10 HELIX 6 AA6 PRO A 294 LEU A 311 1 18 HELIX 7 AA7 SER A 320 GLY A 329 1 10 HELIX 8 AA8 ILE A 340 GLY A 351 1 12 HELIX 9 AA9 PRO A 352 CYS A 359 5 8 HELIX 10 AB1 GLU A 370 HIS A 375 1 6 HELIX 11 AB2 HIS A 375 LYS A 382 1 8 HELIX 12 AB3 ASN A 394 GLN A 396 5 3 HELIX 13 AB4 VAL A 442 LYS A 447 5 6 HELIX 14 AB5 LYS A 449 MET A 460 1 12 HELIX 15 AB6 SER A 485 GLU A 495 1 11 HELIX 16 AB7 PRO A 509 ASN A 517 1 9 HELIX 17 AB8 THR A 535 ILE A 539 5 5 HELIX 18 AB9 HIS A 551 ILE A 558 1 8 HELIX 19 AC1 ASN A 570 GLN A 584 1 15 HELIX 20 AC2 PRO A 591 PHE A 594 5 4 HELIX 21 AC3 THR A 595 GLN A 610 1 16 HELIX 22 AC4 PRO A 621 LEU A 625 5 5 HELIX 23 AC5 SER A 635 SER A 643 1 9 HELIX 24 AC6 PRO A 649 ASN A 656 5 8 HELIX 25 AC7 LYS A 657 LYS A 663 1 7 HELIX 26 AC8 ASP A 694 PHE A 698 5 5 HELIX 27 AC9 PHE B 222 MET B 229 1 8 HELIX 28 AD1 HIS B 232 GLN B 260 1 29 HELIX 29 AD2 GLY B 275 THR B 278 5 4 HELIX 30 AD3 GLY B 296 LEU B 311 1 16 HELIX 31 AD4 SER B 320 GLY B 330 1 11 HELIX 32 AD5 ILE B 340 GLY B 351 1 12 HELIX 33 AD6 PRO B 352 CYS B 359 5 8 HELIX 34 AD7 GLU B 370 HIS B 375 1 6 HELIX 35 AD8 HIS B 375 LYS B 382 1 8 HELIX 36 AD9 ASN B 394 GLN B 396 5 3 HELIX 37 AE1 HIS B 426 LYS B 431 1 6 HELIX 38 AE2 VAL B 442 LYS B 447 5 6 HELIX 39 AE3 LYS B 449 MET B 460 1 12 HELIX 40 AE4 SER B 485 GLU B 495 1 11 HELIX 41 AE5 PRO B 509 ASN B 517 1 9 HELIX 42 AE6 THR B 535 ILE B 539 5 5 HELIX 43 AE7 HIS B 551 ILE B 558 1 8 HELIX 44 AE8 ASN B 570 GLN B 584 1 15 HELIX 45 AE9 PRO B 591 PHE B 594 5 4 HELIX 46 AF1 THR B 595 GLN B 610 1 16 HELIX 47 AF2 PRO B 621 LEU B 625 5 5 HELIX 48 AF3 SER B 635 SER B 643 1 9 HELIX 49 AF4 PRO B 649 ASN B 656 5 8 HELIX 50 AF5 LYS B 657 LYS B 663 1 7 HELIX 51 AF6 ASP B 694 PHE B 698 5 5 SHEET 1 AA1 6 ASP A 314 SER A 318 0 SHEET 2 AA1 6 LYS A 269 HIS A 273 1 N VAL A 270 O ARG A 316 SHEET 3 AA1 6 LEU A 335 ASP A 339 1 O TYR A 337 N LEU A 271 SHEET 4 AA1 6 LEU A 361 LEU A 364 1 O LEU A 364 N ILE A 338 SHEET 5 AA1 6 PHE A 398 THR A 400 1 O TYR A 399 N VAL A 363 SHEET 6 AA1 6 SER A 409 PHE A 410 1 O SER A 409 N PHE A 398 SHEET 1 AA2 6 LYS A 479 ASN A 480 0 SHEET 2 AA2 6 GLU A 461 ALA A 464 1 N VAL A 462 O LYS A 479 SHEET 3 AA2 6 ARG A 432 VAL A 438 1 N SER A 436 O GLU A 461 SHEET 4 AA2 6 THR A 496 VAL A 500 1 O VAL A 500 N LEU A 437 SHEET 5 AA2 6 ALA A 520 LYS A 530 1 O ALA A 520 N PHE A 499 SHEET 6 AA2 6 LEU A 547 SER A 549 -1 O LEU A 547 N LYS A 530 SHEET 1 AA3 6 LYS A 479 ASN A 480 0 SHEET 2 AA3 6 GLU A 461 ALA A 464 1 N VAL A 462 O LYS A 479 SHEET 3 AA3 6 ARG A 432 VAL A 438 1 N SER A 436 O GLU A 461 SHEET 4 AA3 6 THR A 496 VAL A 500 1 O VAL A 500 N LEU A 437 SHEET 5 AA3 6 ALA A 520 LYS A 530 1 O ALA A 520 N PHE A 499 SHEET 6 AA3 6 VAL A 563 VAL A 566 1 O TRP A 564 N ASN A 523 SHEET 1 AA4 3 GLN A 626 ALA A 630 0 SHEET 2 AA4 3 GLN A 708 ARG A 714 -1 O ARG A 709 N ALA A 630 SHEET 3 AA4 3 ILE A 646 CYS A 647 -1 N ILE A 646 O ARG A 714 SHEET 1 AA5 5 GLN A 626 ALA A 630 0 SHEET 2 AA5 5 GLN A 708 ARG A 714 -1 O ARG A 709 N ALA A 630 SHEET 3 AA5 5 SER A 681 ASP A 683 -1 N PHE A 682 O GLN A 708 SHEET 4 AA5 5 HIS A 688 GLN A 692 -1 O HIS A 688 N ASP A 683 SHEET 5 AA5 5 SER A 670 ALA A 674 1 N SER A 670 O CYS A 689 SHEET 1 AA6 6 ASP B 314 SER B 318 0 SHEET 2 AA6 6 LYS B 269 HIS B 273 1 N VAL B 270 O ARG B 316 SHEET 3 AA6 6 LEU B 335 ASP B 339 1 O TYR B 337 N LEU B 271 SHEET 4 AA6 6 LEU B 361 LEU B 364 1 O ARG B 362 N ILE B 336 SHEET 5 AA6 6 PHE B 398 THR B 400 1 O TYR B 399 N VAL B 363 SHEET 6 AA6 6 SER B 409 PHE B 410 1 O SER B 409 N PHE B 398 SHEET 1 AA7 6 LYS B 479 ASN B 480 0 SHEET 2 AA7 6 GLU B 461 ALA B 464 1 N VAL B 462 O LYS B 479 SHEET 3 AA7 6 ARG B 432 VAL B 438 1 N SER B 436 O GLU B 461 SHEET 4 AA7 6 THR B 496 VAL B 500 1 O VAL B 500 N LEU B 437 SHEET 5 AA7 6 ALA B 520 LYS B 530 1 O ALA B 520 N PHE B 499 SHEET 6 AA7 6 LEU B 547 SER B 549 -1 O LEU B 547 N LYS B 530 SHEET 1 AA8 6 LYS B 479 ASN B 480 0 SHEET 2 AA8 6 GLU B 461 ALA B 464 1 N VAL B 462 O LYS B 479 SHEET 3 AA8 6 ARG B 432 VAL B 438 1 N SER B 436 O GLU B 461 SHEET 4 AA8 6 THR B 496 VAL B 500 1 O VAL B 500 N LEU B 437 SHEET 5 AA8 6 ALA B 520 LYS B 530 1 O ALA B 520 N PHE B 499 SHEET 6 AA8 6 VAL B 563 VAL B 566 1 O TRP B 564 N ASN B 523 SHEET 1 AA9 3 GLN B 626 ALA B 630 0 SHEET 2 AA9 3 GLN B 708 ARG B 714 -1 O CYS B 711 N LYS B 628 SHEET 3 AA9 3 ILE B 646 CYS B 647 -1 N ILE B 646 O ARG B 714 SHEET 1 AB1 5 GLN B 626 ALA B 630 0 SHEET 2 AB1 5 GLN B 708 ARG B 714 -1 O CYS B 711 N LYS B 628 SHEET 3 AB1 5 SER B 681 ASP B 683 -1 N PHE B 682 O GLN B 708 SHEET 4 AB1 5 HIS B 688 GLN B 692 -1 O HIS B 688 N ASP B 683 SHEET 5 AB1 5 SER B 670 ALA B 674 1 N SER B 670 O CYS B 689 SSBOND 1 CYS A 359 CYS A 613 1555 1555 1.82 SSBOND 2 CYS A 636 CYS A 711 1555 1555 2.18 SSBOND 3 CYS A 640 CYS A 713 1555 1555 2.06 SSBOND 4 CYS A 647 CYS A 700 1555 1555 2.13 SSBOND 5 CYS A 668 CYS A 689 1555 1555 2.42 SSBOND 6 CYS A 724 CYS A 727 1555 1555 2.09 SSBOND 7 CYS B 359 CYS B 613 1555 1555 2.09 SSBOND 8 CYS B 636 CYS B 711 1555 1555 2.21 SSBOND 9 CYS B 640 CYS B 713 1555 1555 2.21 SSBOND 10 CYS B 647 CYS B 700 1555 1555 2.18 SSBOND 11 CYS B 668 CYS B 689 1555 1555 2.44 SSBOND 12 CYS B 724 CYS B 727 1555 1555 2.26 CISPEP 1 PHE A 504 PRO A 505 0 -1.40 CISPEP 2 ASN A 527 PRO A 528 0 11.59 CISPEP 3 ARG A 560 PRO A 561 0 4.54 CISPEP 4 TRP A 619 PRO A 620 0 -1.88 CISPEP 5 VAL A 679 PRO A 680 0 11.26 CISPEP 6 PHE B 504 PRO B 505 0 4.20 CISPEP 7 ASN B 527 PRO B 528 0 13.09 CISPEP 8 ARG B 560 PRO B 561 0 1.70 CISPEP 9 TRP B 619 PRO B 620 0 1.19 CISPEP 10 VAL B 679 PRO B 680 0 11.15 CRYST1 46.860 68.540 91.310 107.30 92.16 107.05 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021340 0.006545 0.003083 0.00000 SCALE2 0.000000 0.015261 0.005205 0.00000 SCALE3 0.000000 0.000000 0.011580 0.00000