HEADER SUGAR BINDING PROTEIN 02-FEB-23 8CF7 TITLE DIMETHYLATED RSL-R5 IN COMPLEX WITH CUCURBIT[7]URIL, C121 SHEET TITLE 2 ASSEMBLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: RSL-R5; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 ORGANISM_TAXID: 305; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LECTIN, CUCURBITURIL, BIOMATERIALS, SUPRAMOLECULAR, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.RAMBERG,P.B.CROWLEY REVDAT 1 05-JUL-23 8CF7 0 JRNL AUTH K.O.RAMBERG,P.B.CROWLEY JRNL TITL CAGE VERSUS SHEET: PROBING THE DETERMINANTS OF PROTEIN - JRNL TITL 2 CUCURBIT[7]URIL CRYSTALLINE ARCHITECTURES. JRNL REF J.STRUCT.BIOL. V. 215 07969 2023 JRNL REFN ESSN 1095-8657 JRNL PMID 37137399 JRNL DOI 10.1016/J.JSB.2023.107969 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.17 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 212341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 10549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7400 - 3.5400 0.97 7145 387 0.1606 0.1563 REMARK 3 2 3.5400 - 2.8100 1.00 7052 396 0.1671 0.1791 REMARK 3 3 2.8100 - 2.4500 0.99 7123 433 0.1812 0.1932 REMARK 3 4 2.4500 - 2.2300 1.00 7045 391 0.1812 0.1926 REMARK 3 5 2.2300 - 2.0700 1.00 7041 442 0.1755 0.1925 REMARK 3 6 2.0700 - 1.9500 1.00 7063 319 0.1672 0.1869 REMARK 3 7 1.9500 - 1.8500 1.00 7229 306 0.1636 0.1856 REMARK 3 8 1.8500 - 1.7700 1.00 7070 391 0.1811 0.1915 REMARK 3 9 1.7700 - 1.7000 1.00 7095 325 0.1818 0.1912 REMARK 3 10 1.7000 - 1.6400 1.00 7007 385 0.1739 0.2063 REMARK 3 11 1.6400 - 1.5900 1.00 7015 392 0.1738 0.1821 REMARK 3 12 1.5900 - 1.5500 0.99 7046 372 0.1776 0.1917 REMARK 3 13 1.5500 - 1.5100 0.99 6992 357 0.1776 0.2040 REMARK 3 14 1.5100 - 1.4700 0.99 7073 362 0.1812 0.1748 REMARK 3 15 1.4700 - 1.4300 0.99 6906 375 0.1808 0.1892 REMARK 3 16 1.4300 - 1.4000 0.99 6946 357 0.1893 0.1925 REMARK 3 17 1.4000 - 1.3800 0.99 7103 326 0.1908 0.1997 REMARK 3 18 1.3800 - 1.3500 0.99 6999 345 0.1909 0.1813 REMARK 3 19 1.3500 - 1.3300 0.99 6919 324 0.1880 0.1864 REMARK 3 20 1.3300 - 1.3000 0.99 7022 373 0.1938 0.1870 REMARK 3 21 1.3000 - 1.2800 0.98 6807 407 0.1945 0.2024 REMARK 3 22 1.2800 - 1.2600 0.96 6733 346 0.2005 0.2052 REMARK 3 23 1.2600 - 1.2400 0.95 6753 398 0.1957 0.2362 REMARK 3 24 1.2400 - 1.2300 0.93 6602 297 0.2009 0.2338 REMARK 3 25 1.2300 - 1.2100 0.92 6474 336 0.2094 0.2155 REMARK 3 26 1.2100 - 1.1900 0.90 6369 295 0.2105 0.2055 REMARK 3 27 1.1900 - 1.1800 0.85 5950 325 0.2175 0.1883 REMARK 3 28 1.1800 - 1.1700 0.79 5611 285 0.2213 0.2427 REMARK 3 29 1.1700 - 1.1500 0.72 5032 293 0.2362 0.2568 REMARK 3 30 1.1500 - 1.1400 0.64 4570 209 0.2395 0.2523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5155 REMARK 3 ANGLE : 0.899 7311 REMARK 3 CHIRALITY : 0.082 665 REMARK 3 PLANARITY : 0.016 1111 REMARK 3 DIHEDRAL : 9.473 1260 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 212450 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 46.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.3 REMARK 200 DATA REDUNDANCY IN SHELL : 33.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG3350 0.1 M BIS-TRIS PH 5.5 0.2 REMARK 280 M NACL, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.84750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.19800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.84750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.19800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 241 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 90 REMARK 465 ASN B 90 REMARK 465 ASN D 90 REMARK 465 ASN E 90 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SNM A 1 CB OG REMARK 480 THR B 69 CB OG1 CG2 REMARK 480 THR C 70 CB OG1 CG2 REMARK 480 ASN C 90 CG OD1 ND2 REMARK 480 THR D 69 CB OG1 CG2 REMARK 480 THR F 69 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 67 O HOH A 201 2.04 REMARK 500 O HOH D 202 O HOH D 322 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 69 OG1 THR C 69 4555 1.71 REMARK 500 OG1 THR E 69 OG1 THR F 69 4556 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 67 -164.41 -101.52 REMARK 500 ASN A 79 53.80 -144.23 REMARK 500 ASN B 79 52.70 -144.06 REMARK 500 ASN C 79 48.37 -143.24 REMARK 500 ASN D 79 48.70 -143.14 REMARK 500 ASN E 79 43.50 -141.40 REMARK 500 ASN F 79 51.31 -143.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 356 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 357 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 358 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH B 355 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH C 352 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH D 359 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH E 348 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH E 349 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH F 356 DISTANCE = 6.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QQ7 A 101 O07 REMARK 620 2 QQ7 A 101 O10 89.1 REMARK 620 3 QQ7 B 101 O06 48.0 42.9 REMARK 620 4 QQ7 B 101 O 51.1 39.2 4.0 REMARK 620 5 QQ7 C 101 O07 52.8 38.8 4.8 3.6 REMARK 620 6 QQ7 C 101 O02 49.7 42.6 3.4 5.6 3.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QQ7 D 101 O07 REMARK 620 2 QQ7 D 101 O10 89.3 REMARK 620 3 QQ7 E 101 O06 48.2 42.9 REMARK 620 4 QQ7 E 101 O 51.4 39.1 4.0 REMARK 620 5 QQ7 F 101 O02 49.9 42.5 3.4 5.6 REMARK 620 6 QQ7 F 101 O07 53.0 38.7 4.8 3.6 3.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8CF6 RELATED DB: PDB REMARK 900 SAME PROTEIN AND LIGAND DIFFERENT ASSEMBLY DBREF 8CF7 A 1 90 PDB 8CF7 8CF7 1 90 DBREF 8CF7 B 1 90 PDB 8CF7 8CF7 1 90 DBREF 8CF7 C 1 90 PDB 8CF7 8CF7 1 90 DBREF 8CF7 D 1 90 PDB 8CF7 8CF7 1 90 DBREF 8CF7 E 1 90 PDB 8CF7 8CF7 1 90 DBREF 8CF7 F 1 90 PDB 8CF7 8CF7 1 90 SEQRES 1 A 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 A 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY ARG ILE SEQRES 3 A 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 A 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 A 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 A 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 A 90 ASN GLY TRP THR ARG GLY ALA TYR THR ALA THR ASN SEQRES 1 B 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 B 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY ARG ILE SEQRES 3 B 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 B 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 B 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 B 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 B 90 ASN GLY TRP THR ARG GLY ALA TYR THR ALA THR ASN SEQRES 1 C 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 C 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY ARG ILE SEQRES 3 C 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 C 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 C 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 C 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 C 90 ASN GLY TRP THR ARG GLY ALA TYR THR ALA THR ASN SEQRES 1 D 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 D 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY ARG ILE SEQRES 3 D 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 D 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 D 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 D 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 D 90 ASN GLY TRP THR ARG GLY ALA TYR THR ALA THR ASN SEQRES 1 E 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 E 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY ARG ILE SEQRES 3 E 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 E 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 E 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 E 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 E 90 ASN GLY TRP THR ARG GLY ALA TYR THR ALA THR ASN SEQRES 1 F 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 F 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY ARG ILE SEQRES 3 F 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 F 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 F 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 F 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 F 90 ASN GLY TRP THR ARG GLY ALA TYR THR ALA THR ASN HET SNM A 1 8 HET MLY A 34 11 HET SNM B 1 8 HET MLY B 34 19 HET SNM C 1 8 HET MLY C 34 19 HET SNM D 1 8 HET MLY D 34 11 HET SNM E 1 8 HET MLY E 34 11 HET SNM F 1 8 HET MLY F 34 11 HET QQ7 A 101 84 HET GOL A 102 6 HET GOL A 103 6 HET GOL A 104 6 HET QQ7 B 101 84 HET GOL B 102 6 HET GOL B 103 6 HET NA B 104 1 HET QQ7 C 101 84 HET GOL C 102 6 HET GOL C 103 6 HET QQ7 D 101 84 HET GOL D 102 6 HET GOL D 103 6 HET GOL D 104 6 HET QQ7 E 101 84 HET GOL E 102 6 HET GOL E 103 6 HET NA E 104 1 HET QQ7 F 101 84 HET GOL F 102 6 HET GOL F 103 6 HET GOL F 104 6 HETNAM SNM N,N-DIMETHYL-L-SERINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM QQ7 CUCURBIT[7]URIL HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SNM 6(C5 H11 N O3) FORMUL 1 MLY 6(C8 H18 N2 O2) FORMUL 7 QQ7 6(C42 H42 N28 O14) FORMUL 8 GOL 15(C3 H8 O3) FORMUL 14 NA 2(NA 1+) FORMUL 30 HOH *929(H2 O) SHEET 1 AA1 4 GLN A 4 TRP A 10 0 SHEET 2 AA1 4 SER A 15 ASN A 22 -1 O ALA A 21 N GLN A 4 SHEET 3 AA1 4 ARG A 25 TRP A 31 -1 O ARG A 25 N ASN A 22 SHEET 4 AA1 4 TRP A 36 PRO A 44 -1 O GLU A 43 N ILE A 26 SHEET 1 AA2 4 ASN A 47 VAL A 55 0 SHEET 2 AA2 4 ALA A 58 THR A 67 -1 O TYR A 64 N SER A 49 SHEET 3 AA2 4 THR A 70 TRP A 76 -1 O THR A 70 N THR A 67 SHEET 4 AA2 4 TRP A 81 ARG A 83 -1 O THR A 82 N CYS A 75 SHEET 1 AA3 4 GLN B 4 TRP B 10 0 SHEET 2 AA3 4 SER B 15 ASN B 22 -1 O ALA B 21 N GLN B 4 SHEET 3 AA3 4 ARG B 25 TRP B 31 -1 O ARG B 25 N ASN B 22 SHEET 4 AA3 4 TRP B 36 PRO B 44 -1 O GLU B 43 N ILE B 26 SHEET 1 AA4 4 ASN B 47 VAL B 55 0 SHEET 2 AA4 4 ALA B 58 THR B 67 -1 O ARG B 62 N THR B 51 SHEET 3 AA4 4 THR B 70 TRP B 76 -1 O THR B 70 N THR B 67 SHEET 4 AA4 4 TRP B 81 ARG B 83 -1 O THR B 82 N CYS B 75 SHEET 1 AA5 4 GLN C 4 TRP C 10 0 SHEET 2 AA5 4 SER C 15 ASN C 22 -1 O ALA C 21 N GLN C 4 SHEET 3 AA5 4 ARG C 25 TRP C 31 -1 O ARG C 25 N ASN C 22 SHEET 4 AA5 4 TRP C 36 PRO C 44 -1 O GLU C 43 N ILE C 26 SHEET 1 AA6 4 ASN C 47 VAL C 55 0 SHEET 2 AA6 4 ALA C 58 THR C 67 -1 O ARG C 62 N THR C 51 SHEET 3 AA6 4 THR C 70 TRP C 76 -1 O THR C 70 N THR C 67 SHEET 4 AA6 4 TRP C 81 ARG C 83 -1 O THR C 82 N CYS C 75 SHEET 1 AA7 4 GLN D 4 TRP D 10 0 SHEET 2 AA7 4 SER D 15 ASN D 22 -1 O ALA D 21 N GLN D 4 SHEET 3 AA7 4 ARG D 25 TRP D 31 -1 O ARG D 25 N ASN D 22 SHEET 4 AA7 4 TRP D 36 PRO D 44 -1 O GLU D 43 N ILE D 26 SHEET 1 AA8 4 ASN D 47 VAL D 55 0 SHEET 2 AA8 4 ALA D 58 THR D 67 -1 O ARG D 62 N THR D 51 SHEET 3 AA8 4 THR D 70 TRP D 76 -1 O THR D 70 N THR D 67 SHEET 4 AA8 4 TRP D 81 ARG D 83 -1 O THR D 82 N CYS D 75 SHEET 1 AA9 4 GLN E 4 TRP E 10 0 SHEET 2 AA9 4 SER E 15 ASN E 22 -1 O ALA E 21 N GLN E 4 SHEET 3 AA9 4 ARG E 25 TRP E 31 -1 O ARG E 25 N ASN E 22 SHEET 4 AA9 4 TRP E 36 PRO E 44 -1 O GLU E 43 N ILE E 26 SHEET 1 AB1 4 ASN E 47 VAL E 55 0 SHEET 2 AB1 4 ALA E 58 THR E 67 -1 O ARG E 62 N THR E 51 SHEET 3 AB1 4 THR E 70 TRP E 76 -1 O THR E 72 N ALA E 65 SHEET 4 AB1 4 TRP E 81 ARG E 83 -1 O THR E 82 N CYS E 75 SHEET 1 AB2 4 GLN F 4 TRP F 10 0 SHEET 2 AB2 4 SER F 15 ASN F 22 -1 O ALA F 21 N GLN F 4 SHEET 3 AB2 4 ARG F 25 TRP F 31 -1 O ARG F 25 N ASN F 22 SHEET 4 AB2 4 TRP F 36 PRO F 44 -1 O GLU F 43 N ILE F 26 SHEET 1 AB3 4 ASN F 47 VAL F 55 0 SHEET 2 AB3 4 ALA F 58 THR F 67 -1 O ARG F 62 N THR F 51 SHEET 3 AB3 4 THR F 70 TRP F 76 -1 O THR F 70 N THR F 67 SHEET 4 AB3 4 TRP F 81 ARG F 83 -1 O THR F 82 N CYS F 75 LINK C SNM A 1 N SER A 2 1555 1555 1.34 LINK C GLY A 33 N MLY A 34 1555 1555 1.33 LINK C MLY A 34 N GLY A 35 1555 1555 1.32 LINK C SNM B 1 N SER B 2 1555 1555 1.33 LINK C GLY B 33 N MLY B 34 1555 1555 1.33 LINK C MLY B 34 N GLY B 35 1555 1555 1.32 LINK C SNM C 1 N SER C 2 1555 1555 1.33 LINK C GLY C 33 N MLY C 34 1555 1555 1.33 LINK C MLY C 34 N GLY C 35 1555 1555 1.32 LINK C SNM D 1 N SER D 2 1555 1555 1.33 LINK C GLY D 33 N MLY D 34 1555 1555 1.33 LINK C MLY D 34 N GLY D 35 1555 1555 1.32 LINK C SNM E 1 N SER E 2 1555 1555 1.33 LINK C GLY E 33 N MLY E 34 1555 1555 1.33 LINK C MLY E 34 N GLY E 35 1555 1555 1.32 LINK C SNM F 1 N SER F 2 1555 1555 1.33 LINK C GLY F 33 N MLY F 34 1555 1555 1.33 LINK C MLY F 34 N GLY F 35 1555 1555 1.32 LINK O07 QQ7 A 101 NA NA B 104 1555 3455 2.67 LINK O10 QQ7 A 101 NA NA B 104 1555 3455 2.37 LINK O06 QQ7 B 101 NA NA B 104 1555 1555 2.66 LINK O QQ7 B 101 NA NA B 104 1555 1555 2.37 LINK NA NA B 104 O07 QQ7 C 101 1555 1545 2.37 LINK NA NA B 104 O02 QQ7 C 101 1555 1545 2.66 LINK O07 QQ7 D 101 NA NA E 104 1555 1565 2.68 LINK O10 QQ7 D 101 NA NA E 104 1555 1565 2.36 LINK O06 QQ7 E 101 NA NA E 104 1555 1555 2.67 LINK O QQ7 E 101 NA NA E 104 1555 1555 2.35 LINK NA NA E 104 O02 QQ7 F 101 1555 3545 2.66 LINK NA NA E 104 O07 QQ7 F 101 1555 3545 2.36 CISPEP 1 VAL A 13 PRO A 14 0 -5.29 CISPEP 2 VAL B 13 PRO B 14 0 -5.01 CISPEP 3 VAL C 13 PRO C 14 0 -5.36 CISPEP 4 VAL D 13 PRO D 14 0 -4.64 CISPEP 5 VAL E 13 PRO E 14 0 -4.37 CISPEP 6 VAL F 13 PRO F 14 0 -4.67 CRYST1 87.695 50.396 140.219 90.00 90.05 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011403 0.000000 0.000009 0.00000 SCALE2 0.000000 0.019843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007132 0.00000 HETATM 1 N SNM A 1 8.981 -1.938 -4.209 1.00 42.14 N ANISOU 1 N SNM A 1 5214 6812 3987 956 2215 881 N HETATM 2 CA SNM A 1 9.141 -3.264 -3.562 1.00 40.69 C ANISOU 2 CA SNM A 1 4994 6631 3834 954 2054 846 C HETATM 3 CB SNM A 1 10.613 -3.638 -3.397 0.00 41.73 C ANISOU 3 CB SNM A 1 5153 6774 3927 956 2198 822 C HETATM 4 OG SNM A 1 10.783 -5.009 -3.780 0.00 42.07 O ANISOU 4 OG SNM A 1 5193 6854 3939 971 2204 857 O HETATM 5 C SNM A 1 8.374 -3.465 -2.271 1.00 37.92 C ANISOU 5 C SNM A 1 4567 6222 3619 875 2016 733 C HETATM 6 O SNM A 1 7.591 -4.441 -2.222 1.00 38.64 O ANISOU 6 O SNM A 1 4676 6329 3677 871 1906 761 O HETATM 7 C1 SNM A 1 7.601 -1.446 -4.074 1.00 42.63 C ANISOU 7 C1 SNM A 1 5293 6877 4026 1007 2215 845 C HETATM 8 C2 SNM A 1 9.934 -0.949 -3.677 1.00 42.67 C ANISOU 8 C2 SNM A 1 5302 6869 4043 1005 2167 846 C