data_8CH5 # _entry.id 8CH5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8CH5 pdb_00008ch5 10.2210/pdb8ch5/pdb WWPDB D_1292128495 ? ? EMDB EMD-16657 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-12-20 2 'Structure model' 1 1 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation 3 2 'Structure model' citation_author 4 2 'Structure model' em_author_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.name' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation_author.identifier_ORCID' 9 2 'Structure model' '_citation_author.name' 10 2 'Structure model' '_em_author_list.author' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8CH5 _pdbx_database_status.recvd_initial_deposition_date 2023-02-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of the fd bacteriophage capsid major coat protein pVIII' _pdbx_database_related.db_id EMD-16657 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email tbharat@mrc-lmb.cam.ac.uk _pdbx_contact_author.name_first Tanmay _pdbx_contact_author.name_last Bharat _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0168-0277 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Boehning, J.' 1 0000-0002-6242-1041 'Bharat, T.A.M.' 2 0000-0002-0168-0277 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nat Commun' ? ? 2041-1723 ? ? 14 ? 8429 8429 'Biophysical basis of filamentous phage tactoid-mediated antibiotic tolerance in P. aeruginosa.' 2023 ? 10.1038/s41467-023-44160-8 38114502 ? ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? 2692-8205 ? ? ? ? ? ? 'Biophysical basis of phage liquid crystalline droplet-mediated antibiotic tolerance in pathogenic bacteria' 2023 ? 10.1101/2022.12.13.520211 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bohning, J.' 1 0000-0002-6242-1041 primary 'Graham, M.' 2 0000-0002-0611-8224 primary 'Letham, S.C.' 3 0000-0002-3558-3221 primary 'Davis, L.K.' 4 0000-0003-4487-4159 primary 'Schulze, U.' 5 ? primary 'Stansfeld, P.J.' 6 0000-0001-8800-7669 primary 'Corey, R.A.' 7 0000-0003-1820-7993 primary 'Pearce, P.' 8 0000-0001-5788-3826 primary 'Tarafder, A.K.' 9 0000-0002-0368-6111 primary 'Bharat, T.A.M.' 10 0000-0002-0168-0277 1 'Bohning, J.' 11 ? 1 'Graham, M.' 12 ? 1 'Letham, S.' 13 ? 1 'Davis, L.' 14 ? 1 'Schulze, U.' 15 ? 1 'Stansfeld, P.' 16 ? 1 'Corey, R.' 17 ? 1 'Pearce, P.' 18 ? 1 'Tarafder, A.' 19 ? 1 'Bharat, T.' 20 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Major capsid protein pVIII' _entity.formula_weight 5244.000 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Coat protein B,Gene 8 protein,G8P,Major coat protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AEGDDPAKAAFDSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS _entity_poly.pdbx_seq_one_letter_code_can AEGDDPAKAAFDSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 GLY n 1 4 ASP n 1 5 ASP n 1 6 PRO n 1 7 ALA n 1 8 LYS n 1 9 ALA n 1 10 ALA n 1 11 PHE n 1 12 ASP n 1 13 SER n 1 14 LEU n 1 15 GLN n 1 16 ALA n 1 17 SER n 1 18 ALA n 1 19 THR n 1 20 GLU n 1 21 TYR n 1 22 ILE n 1 23 GLY n 1 24 TYR n 1 25 ALA n 1 26 TRP n 1 27 ALA n 1 28 MET n 1 29 VAL n 1 30 VAL n 1 31 VAL n 1 32 ILE n 1 33 VAL n 1 34 GLY n 1 35 ALA n 1 36 THR n 1 37 ILE n 1 38 GLY n 1 39 ILE n 1 40 LYS n 1 41 LEU n 1 42 PHE n 1 43 LYS n 1 44 LYS n 1 45 PHE n 1 46 THR n 1 47 SER n 1 48 LYS n 1 49 ALA n 1 50 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 50 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Escherichia coli' _entity_src_nat.pdbx_ncbi_taxonomy_id 562 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 ASP 4 4 ? ? ? A . n A 1 5 ASP 5 5 ? ? ? A . n A 1 6 PRO 6 6 29 PRO PRO A . n A 1 7 ALA 7 7 30 ALA ALA A . n A 1 8 LYS 8 8 31 LYS LYS A . n A 1 9 ALA 9 9 32 ALA ALA A . n A 1 10 ALA 10 10 33 ALA ALA A . n A 1 11 PHE 11 11 34 PHE PHE A . n A 1 12 ASP 12 12 35 ASP ASP A . n A 1 13 SER 13 13 36 SER SER A . n A 1 14 LEU 14 14 37 LEU LEU A . n A 1 15 GLN 15 15 38 GLN GLN A . n A 1 16 ALA 16 16 39 ALA ALA A . n A 1 17 SER 17 17 40 SER SER A . n A 1 18 ALA 18 18 41 ALA ALA A . n A 1 19 THR 19 19 42 THR THR A . n A 1 20 GLU 20 20 43 GLU GLU A . n A 1 21 TYR 21 21 44 TYR TYR A . n A 1 22 ILE 22 22 45 ILE ILE A . n A 1 23 GLY 23 23 46 GLY GLY A . n A 1 24 TYR 24 24 47 TYR TYR A . n A 1 25 ALA 25 25 48 ALA ALA A . n A 1 26 TRP 26 26 49 TRP TRP A . n A 1 27 ALA 27 27 50 ALA ALA A . n A 1 28 MET 28 28 51 MET MET A . n A 1 29 VAL 29 29 52 VAL VAL A . n A 1 30 VAL 30 30 53 VAL VAL A . n A 1 31 VAL 31 31 54 VAL VAL A . n A 1 32 ILE 32 32 55 ILE ILE A . n A 1 33 VAL 33 33 56 VAL VAL A . n A 1 34 GLY 34 34 57 GLY GLY A . n A 1 35 ALA 35 35 58 ALA ALA A . n A 1 36 THR 36 36 59 THR THR A . n A 1 37 ILE 37 37 60 ILE ILE A . n A 1 38 GLY 38 38 61 GLY GLY A . n A 1 39 ILE 39 39 62 ILE ILE A . n A 1 40 LYS 40 40 63 LYS LYS A . n A 1 41 LEU 41 41 64 LEU LEU A . n A 1 42 PHE 42 42 65 PHE PHE A . n A 1 43 LYS 43 43 66 LYS LYS A . n A 1 44 LYS 44 44 67 LYS LYS A . n A 1 45 PHE 45 45 68 PHE PHE A . n A 1 46 THR 46 46 69 THR THR A . n A 1 47 SER 47 47 70 SER SER A . n A 1 48 LYS 48 48 71 LYS LYS A . n A 1 49 ALA 49 49 72 ALA ALA A . n A 1 50 SER 50 50 73 SER SER A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8CH5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8CH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8CH5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8CH5 _struct.title 'Cryo-EM structure of the fd bacteriophage capsid major coat protein pVIII' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8CH5 _struct_keywords.text 'Bacteriophage, fd, inovirus, ff, helical, phage, filamentous, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CAPSD_BPFD _struct_ref.pdbx_db_accession P69539 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AEGDDPAKAAFDSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS _struct_ref.pdbx_align_begin 24 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8CH5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 50 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P69539 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 73 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 50 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 50-meric _pdbx_struct_assembly.oligomeric_count 50 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,10,11,12,13,14,15,16,17,18,19,2,20,21,22,23,24,25,26,27,28,29,3,30,31,32,33,34,35,36,37,38,39,4,40,41,42,43,44,45,46,47,48,49,5,6,7,8,9,50 ; _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 ? 1.00000000 0.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 2 'point symmetry operation' ? ? 0.32239971 -0.94660325 -0.00084736 266.33306660 0.94660245 0.32239776 0.00186857 -44.10694665 -0.00149561 -0.00140454 0.99999790 0.44469609 3 'point symmetry operation' ? ? -0.82155191 -0.57007676 0.00805936 390.93459275 0.57009654 -0.82157769 0.00019362 204.67323622 0.00651101 0.00475368 0.99996750 -1.70229229 4 'point symmetry operation' ? ? -0.79863272 0.60181389 0.00241263 195.98853015 -0.60179172 -0.79862843 0.00627332 392.47667015 0.00570217 0.00355818 0.99997741 -1.40405113 5 'point symmetry operation' ? ? 0.30639111 0.95190558 -0.00050487 -42.27920960 -0.95190437 0.30639153 0.00151895 269.25745507 0.00160059 0.00001520 0.99999872 -0.26709309 6 'point symmetry operation' ? ? -0.78585435 -0.61841161 -0.00016453 393.84384833 0.61841161 -0.78585436 0.00001135 191.22979171 -0.00013631 -0.00009283 0.99999999 -66.44249249 7 'point symmetry operation' ? ? -0.83873885 0.54453349 -0.00064840 211.81639464 -0.54453145 -0.83873808 -0.00198415 390.59633526 -0.00162428 -0.00131111 0.99999782 -66.02954149 8 'point symmetry operation' ? ? 0.29304951 0.95607445 -0.00660566 -39.94570784 -0.95607475 0.29308303 0.00483818 272.14845671 0.00656167 0.00489767 0.99996648 -68.21415342 9 'point symmetry operation' ? ? 0.99976296 0.02094848 -0.00593107 -2.88847531 -0.02096905 0.99977425 -0.00342757 4.00302768 0.00585793 0.00355113 0.99997654 -67.90840701 10 'point symmetry operation' ? ? 0.34789351 -0.93753379 -0.00070192 260.55588138 0.93753261 0.34789419 -0.00149895 -46.51296009 0.00164951 -0.00013660 0.99999863 -66.73019083 11 'point symmetry operation' ? ? -0.28149603 -0.95956239 -0.00012955 367.10556240 0.95956239 -0.28149603 0.00005054 52.72997306 -0.00008496 -0.00011009 0.99999999 -49.82808672 12 'point symmetry operation' ? ? -0.99907867 -0.04288348 -0.00167930 334.45459984 0.04288567 -0.99907915 -0.00129350 320.71159655 -0.00162228 -0.00136432 0.99999775 -49.40119663 13 'point symmetry operation' ? ? -0.31578965 0.94882573 -0.00257464 60.66294904 -0.94880685 -0.31576240 0.00772445 370.24244354 0.00651619 0.00488214 0.99996685 -51.58416474 14 'point symmetry operation' ? ? 0.80227198 0.59691973 -0.00681995 -64.67114840 -0.59693026 0.80229291 0.00059264 130.31169606 0.00582536 0.00359558 0.99997657 -51.29028655 15 'point symmetry operation' ? ? 0.82716092 -0.56196328 -0.00144107 120.63829199 0.56196263 0.82716217 -0.00086212 -63.63486253 0.00167648 -0.00009672 0.99999859 -50.12116901 16 'point symmetry operation' ? ? 0.32720637 -0.94495290 -0.00007614 264.99926965 0.94495290 0.32720637 0.00005975 -44.58508792 -0.00003154 -0.00009150 1.00000000 -33.21980625 17 'point symmetry operation' ? ? -0.78900819 -0.61437904 -0.00211459 393.82356962 0.61438063 -0.78900978 -0.00013040 192.65692025 -0.00158832 -0.00140205 0.99999776 -32.78047667 18 'point symmetry operation' ? ? -0.80754333 0.58980345 0.00237840 199.51352945 -0.58977259 -0.80753228 0.00773959 391.79924259 0.00648547 0.00484733 0.99996722 -34.95343767 19 'point symmetry operation' ? ? 0.30731774 0.95159269 -0.00521088 -41.74106285 -0.95158942 0.30734072 0.00438968 269.04212505 0.00577870 0.00360959 0.99997679 -34.66500358 20 'point symmetry operation' ? ? 0.99975727 0.02196805 -0.00167337 -3.27429289 -0.02196794 0.99975867 0.00008271 3.56953151 0.00167479 -0.00004593 0.99999860 -33.50921642 21 'point symmetry operation' ? ? 0.81461538 -0.58000154 -0.00003086 125.37549097 0.58000154 0.81461538 0.00003995 -64.64224058 0.00000197 -0.00005045 1.00000000 -16.61199872 22 'point symmetry operation' ? ? -0.28639448 -0.95811010 -0.00180201 367.91589362 0.95811055 -0.28639663 0.00107358 53.89976053 -0.00154470 -0.00141906 0.99999780 -16.16485976 23 'point symmetry operation' ? ? -0.99990617 0.01209686 0.00642800 325.12939949 -0.01206565 -0.99991534 0.00487092 328.82640754 0.00648638 0.00479290 0.99996748 -18.32471631 24 'point symmetry operation' ? ? -0.30155652 0.95344679 -0.00169668 57.39669680 -0.95343109 -0.30153991 0.00654598 368.75142374 0.00572962 0.00359165 0.99997714 -18.03412185 25 'point symmetry operation' ? ? 0.80168735 0.59774213 -0.00132041 -65.23622733 -0.59774132 0.80168843 0.00098739 130.18015397 0.00164876 -0.00000232 0.99999864 -16.89204459 26 'point symmetry operation' ? ? 0.81462400 0.57998943 0.00000046 -64.64029407 -0.57998943 0.81462400 -0.00004985 125.37254521 -0.00002929 0.00004034 1.00000000 16.61817852 27 'point symmetry operation' ? ? 0.81165358 -0.58413895 0.00039324 126.73967110 0.58413724 0.81165253 0.00196315 -65.02834355 -0.00146593 -0.00136369 0.99999800 17.05314349 28 'point symmetry operation' ? ? -0.33859230 -0.94090953 0.00667240 372.53206031 0.94091034 -0.33862498 -0.00456705 65.36370190 0.00655662 0.00473176 0.99996731 14.91380349 29 'point symmetry operation' ? ? -0.99961820 0.02705746 0.00559824 322.64977954 -0.02703722 -0.99962773 0.00366035 331.42266203 0.00569520 0.00350759 0.99997763 15.22534334 30 'point symmetry operation' ? ? -0.30250138 0.95314883 0.00046900 57.08477131 -0.95314768 -0.30250174 0.00148265 369.23742950 0.00155506 0.00000148 0.99999879 16.36266770 31 'point symmetry operation' ? ? 0.32722141 0.94494769 -0.00003151 -44.58199799 -0.94494769 0.32722141 -0.00009396 264.99481279 -0.00007848 0.00006052 1.00000000 33.24294202 32 'point symmetry operation' ? ? 0.99998593 -0.00510164 0.00145476 0.88963387 0.00509972 0.99998613 0.00131784 -1.10905622 -0.00146147 -0.00131040 0.99999807 33.66369557 33 'point symmetry operation' ? ? 0.26990774 -0.96288216 0.00278392 276.74122500 0.96286353 0.26988043 -0.00764084 -37.44777099 0.00660590 0.00474285 0.99996693 31.52388563 34 'point symmetry operation' ? ? -0.82998519 -0.55774545 0.00667734 390.42133684 0.55775610 -0.83000484 -0.00031731 208.21967075 0.00571921 0.00346096 0.99997766 31.84892289 35 'point symmetry operation' ? ? -0.79924219 0.60100781 0.00124032 196.01740056 -0.60100716 -0.79924315 0.00088207 393.05305075 0.00152145 -0.00004046 0.99999884 32.99494097 36 'point symmetry operation' ? ? -0.28151246 0.95955757 -0.00007709 52.73929848 -0.95955756 -0.28151247 -0.00011040 367.10073106 -0.00012763 0.00004289 0.99999999 49.87376098 37 'point symmetry operation' ? ? 0.81757364 0.57582076 0.00194832 -64.55823910 -0.57582214 0.81757497 0.00018133 123.94975897 -0.00148849 -0.00127014 0.99999809 50.28146036 38 'point symmetry operation' ? ? 0.77832419 -0.62785888 -0.00216513 139.08079081 0.62782752 0.77831252 -0.00788874 -65.64215345 0.00663816 0.00478067 0.99996654 48.13240941 39 'point symmetry operation' ? ? -0.35261502 -0.93575374 0.00525200 374.17031884 0.93575073 -0.35263734 -0.00417929 68.54707358 0.00576284 0.00344088 0.99997747 48.46507612 40 'point symmetry operation' ? ? -0.99965984 0.02603628 0.00152213 323.00810219 -0.02603638 -0.99966099 -0.00004730 331.87151668 0.00152039 -0.00008691 0.99999884 49.62282713 41 'point symmetry operation' ? ? -0.78585826 0.61840664 -0.00012631 191.23654425 -0.61840664 -0.78585827 -0.00009187 393.83023266 -0.00015608 0.00000591 0.99999999 66.50453908 42 'point symmetry operation' ? ? 0.33203355 0.94326606 0.00169397 -45.34031581 -0.94326632 0.33203550 -0.00103528 263.78802447 -0.00153900 -0.00125412 0.99999803 66.90702898 43 'point symmetry operation' ? ? 0.99817568 -0.06004256 -0.00634021 10.58475752 0.06000991 0.99818413 -0.00522047 -8.76715746 0.00664215 0.00483047 0.99996627 64.74363111 44 'point symmetry operation' ? ? 0.25548661 -0.96681082 0.00184998 279.92343016 0.96679512 0.25547002 -0.00650171 -35.80575710 0.00581331 0.00344965 0.99997715 65.07535676 45 'point symmetry operation' ? ? -0.82944990 -0.55857981 0.00121210 390.97211299 0.55857897 -0.82945077 -0.00097688 208.38057688 0.00155104 -0.00013322 0.99999879 66.24527967 46 'point symmetry operation' ? ? -0.99884175 0.04811587 -0.00015634 319.54268836 -0.04811586 -0.99884176 -0.00004437 335.29683197 -0.00015830 -0.00003679 0.99999999 83.13155106 47 'point symmetry operation' ? ? -0.27660319 0.96098391 0.00077779 51.41943825 -0.96098291 -0.27660138 -0.00187545 366.55394221 -0.00158714 -0.00126620 0.99999794 83.53695681 48 'point symmetry operation' ? ? 0.84794308 0.53002394 -0.00819470 -61.10199669 -0.53004598 0.84796867 -0.00062518 112.08798786 0.00661749 0.00487368 0.99996623 81.36057911 49 'point symmetry operation' ? ? 0.76883865 -0.63943881 -0.00226644 142.63162350 0.63941601 0.76883404 -0.00643387 -66.15069412 0.00585659 0.00349741 0.99997673 81.68064359 50 'point symmetry operation' ? ? -0.35170853 -0.93610947 0.00041707 374.71309836 0.93610820 -0.35170874 -0.00154750 68.35849751 0.00159531 -0.00015384 0.99999872 82.86145727 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 6 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 50 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 6 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 50 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 45 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8CH5 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 79.94 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 8CH5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'Relion 3.1' _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 84458 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'Phosphate-buffered saline' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Enterobacteria phage fd' _em_entity_assembly.details 'Purified by PEG precipitation from the supernatant of infected E. coli cells.' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8CH5 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 3000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER/RHODIUM _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.details '15 mA' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 8CH5 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 283 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8CH5 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A ASP 4 ? A ASP 4 5 1 Y 1 A ASP 5 ? A ASP 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLN N N N N 30 GLN CA C N S 31 GLN C C N N 32 GLN O O N N 33 GLN CB C N N 34 GLN CG C N N 35 GLN CD C N N 36 GLN OE1 O N N 37 GLN NE2 N N N 38 GLN OXT O N N 39 GLN H H N N 40 GLN H2 H N N 41 GLN HA H N N 42 GLN HB2 H N N 43 GLN HB3 H N N 44 GLN HG2 H N N 45 GLN HG3 H N N 46 GLN HE21 H N N 47 GLN HE22 H N N 48 GLN HXT H N N 49 GLU N N N N 50 GLU CA C N S 51 GLU C C N N 52 GLU O O N N 53 GLU CB C N N 54 GLU CG C N N 55 GLU CD C N N 56 GLU OE1 O N N 57 GLU OE2 O N N 58 GLU OXT O N N 59 GLU H H N N 60 GLU H2 H N N 61 GLU HA H N N 62 GLU HB2 H N N 63 GLU HB3 H N N 64 GLU HG2 H N N 65 GLU HG3 H N N 66 GLU HE2 H N N 67 GLU HXT H N N 68 GLY N N N N 69 GLY CA C N N 70 GLY C C N N 71 GLY O O N N 72 GLY OXT O N N 73 GLY H H N N 74 GLY H2 H N N 75 GLY HA2 H N N 76 GLY HA3 H N N 77 GLY HXT H N N 78 ILE N N N N 79 ILE CA C N S 80 ILE C C N N 81 ILE O O N N 82 ILE CB C N S 83 ILE CG1 C N N 84 ILE CG2 C N N 85 ILE CD1 C N N 86 ILE OXT O N N 87 ILE H H N N 88 ILE H2 H N N 89 ILE HA H N N 90 ILE HB H N N 91 ILE HG12 H N N 92 ILE HG13 H N N 93 ILE HG21 H N N 94 ILE HG22 H N N 95 ILE HG23 H N N 96 ILE HD11 H N N 97 ILE HD12 H N N 98 ILE HD13 H N N 99 ILE HXT H N N 100 LEU N N N N 101 LEU CA C N S 102 LEU C C N N 103 LEU O O N N 104 LEU CB C N N 105 LEU CG C N N 106 LEU CD1 C N N 107 LEU CD2 C N N 108 LEU OXT O N N 109 LEU H H N N 110 LEU H2 H N N 111 LEU HA H N N 112 LEU HB2 H N N 113 LEU HB3 H N N 114 LEU HG H N N 115 LEU HD11 H N N 116 LEU HD12 H N N 117 LEU HD13 H N N 118 LEU HD21 H N N 119 LEU HD22 H N N 120 LEU HD23 H N N 121 LEU HXT H N N 122 LYS N N N N 123 LYS CA C N S 124 LYS C C N N 125 LYS O O N N 126 LYS CB C N N 127 LYS CG C N N 128 LYS CD C N N 129 LYS CE C N N 130 LYS NZ N N N 131 LYS OXT O N N 132 LYS H H N N 133 LYS H2 H N N 134 LYS HA H N N 135 LYS HB2 H N N 136 LYS HB3 H N N 137 LYS HG2 H N N 138 LYS HG3 H N N 139 LYS HD2 H N N 140 LYS HD3 H N N 141 LYS HE2 H N N 142 LYS HE3 H N N 143 LYS HZ1 H N N 144 LYS HZ2 H N N 145 LYS HZ3 H N N 146 LYS HXT H N N 147 MET N N N N 148 MET CA C N S 149 MET C C N N 150 MET O O N N 151 MET CB C N N 152 MET CG C N N 153 MET SD S N N 154 MET CE C N N 155 MET OXT O N N 156 MET H H N N 157 MET H2 H N N 158 MET HA H N N 159 MET HB2 H N N 160 MET HB3 H N N 161 MET HG2 H N N 162 MET HG3 H N N 163 MET HE1 H N N 164 MET HE2 H N N 165 MET HE3 H N N 166 MET HXT H N N 167 PHE N N N N 168 PHE CA C N S 169 PHE C C N N 170 PHE O O N N 171 PHE CB C N N 172 PHE CG C Y N 173 PHE CD1 C Y N 174 PHE CD2 C Y N 175 PHE CE1 C Y N 176 PHE CE2 C Y N 177 PHE CZ C Y N 178 PHE OXT O N N 179 PHE H H N N 180 PHE H2 H N N 181 PHE HA H N N 182 PHE HB2 H N N 183 PHE HB3 H N N 184 PHE HD1 H N N 185 PHE HD2 H N N 186 PHE HE1 H N N 187 PHE HE2 H N N 188 PHE HZ H N N 189 PHE HXT H N N 190 PRO N N N N 191 PRO CA C N S 192 PRO C C N N 193 PRO O O N N 194 PRO CB C N N 195 PRO CG C N N 196 PRO CD C N N 197 PRO OXT O N N 198 PRO H H N N 199 PRO HA H N N 200 PRO HB2 H N N 201 PRO HB3 H N N 202 PRO HG2 H N N 203 PRO HG3 H N N 204 PRO HD2 H N N 205 PRO HD3 H N N 206 PRO HXT H N N 207 SER N N N N 208 SER CA C N S 209 SER C C N N 210 SER O O N N 211 SER CB C N N 212 SER OG O N N 213 SER OXT O N N 214 SER H H N N 215 SER H2 H N N 216 SER HA H N N 217 SER HB2 H N N 218 SER HB3 H N N 219 SER HG H N N 220 SER HXT H N N 221 THR N N N N 222 THR CA C N S 223 THR C C N N 224 THR O O N N 225 THR CB C N R 226 THR OG1 O N N 227 THR CG2 C N N 228 THR OXT O N N 229 THR H H N N 230 THR H2 H N N 231 THR HA H N N 232 THR HB H N N 233 THR HG1 H N N 234 THR HG21 H N N 235 THR HG22 H N N 236 THR HG23 H N N 237 THR HXT H N N 238 TRP N N N N 239 TRP CA C N S 240 TRP C C N N 241 TRP O O N N 242 TRP CB C N N 243 TRP CG C Y N 244 TRP CD1 C Y N 245 TRP CD2 C Y N 246 TRP NE1 N Y N 247 TRP CE2 C Y N 248 TRP CE3 C Y N 249 TRP CZ2 C Y N 250 TRP CZ3 C Y N 251 TRP CH2 C Y N 252 TRP OXT O N N 253 TRP H H N N 254 TRP H2 H N N 255 TRP HA H N N 256 TRP HB2 H N N 257 TRP HB3 H N N 258 TRP HD1 H N N 259 TRP HE1 H N N 260 TRP HE3 H N N 261 TRP HZ2 H N N 262 TRP HZ3 H N N 263 TRP HH2 H N N 264 TRP HXT H N N 265 TYR N N N N 266 TYR CA C N S 267 TYR C C N N 268 TYR O O N N 269 TYR CB C N N 270 TYR CG C Y N 271 TYR CD1 C Y N 272 TYR CD2 C Y N 273 TYR CE1 C Y N 274 TYR CE2 C Y N 275 TYR CZ C Y N 276 TYR OH O N N 277 TYR OXT O N N 278 TYR H H N N 279 TYR H2 H N N 280 TYR HA H N N 281 TYR HB2 H N N 282 TYR HB3 H N N 283 TYR HD1 H N N 284 TYR HD2 H N N 285 TYR HE1 H N N 286 TYR HE2 H N N 287 TYR HH H N N 288 TYR HXT H N N 289 VAL N N N N 290 VAL CA C N S 291 VAL C C N N 292 VAL O O N N 293 VAL CB C N N 294 VAL CG1 C N N 295 VAL CG2 C N N 296 VAL OXT O N N 297 VAL H H N N 298 VAL H2 H N N 299 VAL HA H N N 300 VAL HB H N N 301 VAL HG11 H N N 302 VAL HG12 H N N 303 VAL HG13 H N N 304 VAL HG21 H N N 305 VAL HG22 H N N 306 VAL HG23 H N N 307 VAL HXT H N N 308 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLN N CA sing N N 28 GLN N H sing N N 29 GLN N H2 sing N N 30 GLN CA C sing N N 31 GLN CA CB sing N N 32 GLN CA HA sing N N 33 GLN C O doub N N 34 GLN C OXT sing N N 35 GLN CB CG sing N N 36 GLN CB HB2 sing N N 37 GLN CB HB3 sing N N 38 GLN CG CD sing N N 39 GLN CG HG2 sing N N 40 GLN CG HG3 sing N N 41 GLN CD OE1 doub N N 42 GLN CD NE2 sing N N 43 GLN NE2 HE21 sing N N 44 GLN NE2 HE22 sing N N 45 GLN OXT HXT sing N N 46 GLU N CA sing N N 47 GLU N H sing N N 48 GLU N H2 sing N N 49 GLU CA C sing N N 50 GLU CA CB sing N N 51 GLU CA HA sing N N 52 GLU C O doub N N 53 GLU C OXT sing N N 54 GLU CB CG sing N N 55 GLU CB HB2 sing N N 56 GLU CB HB3 sing N N 57 GLU CG CD sing N N 58 GLU CG HG2 sing N N 59 GLU CG HG3 sing N N 60 GLU CD OE1 doub N N 61 GLU CD OE2 sing N N 62 GLU OE2 HE2 sing N N 63 GLU OXT HXT sing N N 64 GLY N CA sing N N 65 GLY N H sing N N 66 GLY N H2 sing N N 67 GLY CA C sing N N 68 GLY CA HA2 sing N N 69 GLY CA HA3 sing N N 70 GLY C O doub N N 71 GLY C OXT sing N N 72 GLY OXT HXT sing N N 73 ILE N CA sing N N 74 ILE N H sing N N 75 ILE N H2 sing N N 76 ILE CA C sing N N 77 ILE CA CB sing N N 78 ILE CA HA sing N N 79 ILE C O doub N N 80 ILE C OXT sing N N 81 ILE CB CG1 sing N N 82 ILE CB CG2 sing N N 83 ILE CB HB sing N N 84 ILE CG1 CD1 sing N N 85 ILE CG1 HG12 sing N N 86 ILE CG1 HG13 sing N N 87 ILE CG2 HG21 sing N N 88 ILE CG2 HG22 sing N N 89 ILE CG2 HG23 sing N N 90 ILE CD1 HD11 sing N N 91 ILE CD1 HD12 sing N N 92 ILE CD1 HD13 sing N N 93 ILE OXT HXT sing N N 94 LEU N CA sing N N 95 LEU N H sing N N 96 LEU N H2 sing N N 97 LEU CA C sing N N 98 LEU CA CB sing N N 99 LEU CA HA sing N N 100 LEU C O doub N N 101 LEU C OXT sing N N 102 LEU CB CG sing N N 103 LEU CB HB2 sing N N 104 LEU CB HB3 sing N N 105 LEU CG CD1 sing N N 106 LEU CG CD2 sing N N 107 LEU CG HG sing N N 108 LEU CD1 HD11 sing N N 109 LEU CD1 HD12 sing N N 110 LEU CD1 HD13 sing N N 111 LEU CD2 HD21 sing N N 112 LEU CD2 HD22 sing N N 113 LEU CD2 HD23 sing N N 114 LEU OXT HXT sing N N 115 LYS N CA sing N N 116 LYS N H sing N N 117 LYS N H2 sing N N 118 LYS CA C sing N N 119 LYS CA CB sing N N 120 LYS CA HA sing N N 121 LYS C O doub N N 122 LYS C OXT sing N N 123 LYS CB CG sing N N 124 LYS CB HB2 sing N N 125 LYS CB HB3 sing N N 126 LYS CG CD sing N N 127 LYS CG HG2 sing N N 128 LYS CG HG3 sing N N 129 LYS CD CE sing N N 130 LYS CD HD2 sing N N 131 LYS CD HD3 sing N N 132 LYS CE NZ sing N N 133 LYS CE HE2 sing N N 134 LYS CE HE3 sing N N 135 LYS NZ HZ1 sing N N 136 LYS NZ HZ2 sing N N 137 LYS NZ HZ3 sing N N 138 LYS OXT HXT sing N N 139 MET N CA sing N N 140 MET N H sing N N 141 MET N H2 sing N N 142 MET CA C sing N N 143 MET CA CB sing N N 144 MET CA HA sing N N 145 MET C O doub N N 146 MET C OXT sing N N 147 MET CB CG sing N N 148 MET CB HB2 sing N N 149 MET CB HB3 sing N N 150 MET CG SD sing N N 151 MET CG HG2 sing N N 152 MET CG HG3 sing N N 153 MET SD CE sing N N 154 MET CE HE1 sing N N 155 MET CE HE2 sing N N 156 MET CE HE3 sing N N 157 MET OXT HXT sing N N 158 PHE N CA sing N N 159 PHE N H sing N N 160 PHE N H2 sing N N 161 PHE CA C sing N N 162 PHE CA CB sing N N 163 PHE CA HA sing N N 164 PHE C O doub N N 165 PHE C OXT sing N N 166 PHE CB CG sing N N 167 PHE CB HB2 sing N N 168 PHE CB HB3 sing N N 169 PHE CG CD1 doub Y N 170 PHE CG CD2 sing Y N 171 PHE CD1 CE1 sing Y N 172 PHE CD1 HD1 sing N N 173 PHE CD2 CE2 doub Y N 174 PHE CD2 HD2 sing N N 175 PHE CE1 CZ doub Y N 176 PHE CE1 HE1 sing N N 177 PHE CE2 CZ sing Y N 178 PHE CE2 HE2 sing N N 179 PHE CZ HZ sing N N 180 PHE OXT HXT sing N N 181 PRO N CA sing N N 182 PRO N CD sing N N 183 PRO N H sing N N 184 PRO CA C sing N N 185 PRO CA CB sing N N 186 PRO CA HA sing N N 187 PRO C O doub N N 188 PRO C OXT sing N N 189 PRO CB CG sing N N 190 PRO CB HB2 sing N N 191 PRO CB HB3 sing N N 192 PRO CG CD sing N N 193 PRO CG HG2 sing N N 194 PRO CG HG3 sing N N 195 PRO CD HD2 sing N N 196 PRO CD HD3 sing N N 197 PRO OXT HXT sing N N 198 SER N CA sing N N 199 SER N H sing N N 200 SER N H2 sing N N 201 SER CA C sing N N 202 SER CA CB sing N N 203 SER CA HA sing N N 204 SER C O doub N N 205 SER C OXT sing N N 206 SER CB OG sing N N 207 SER CB HB2 sing N N 208 SER CB HB3 sing N N 209 SER OG HG sing N N 210 SER OXT HXT sing N N 211 THR N CA sing N N 212 THR N H sing N N 213 THR N H2 sing N N 214 THR CA C sing N N 215 THR CA CB sing N N 216 THR CA HA sing N N 217 THR C O doub N N 218 THR C OXT sing N N 219 THR CB OG1 sing N N 220 THR CB CG2 sing N N 221 THR CB HB sing N N 222 THR OG1 HG1 sing N N 223 THR CG2 HG21 sing N N 224 THR CG2 HG22 sing N N 225 THR CG2 HG23 sing N N 226 THR OXT HXT sing N N 227 TRP N CA sing N N 228 TRP N H sing N N 229 TRP N H2 sing N N 230 TRP CA C sing N N 231 TRP CA CB sing N N 232 TRP CA HA sing N N 233 TRP C O doub N N 234 TRP C OXT sing N N 235 TRP CB CG sing N N 236 TRP CB HB2 sing N N 237 TRP CB HB3 sing N N 238 TRP CG CD1 doub Y N 239 TRP CG CD2 sing Y N 240 TRP CD1 NE1 sing Y N 241 TRP CD1 HD1 sing N N 242 TRP CD2 CE2 doub Y N 243 TRP CD2 CE3 sing Y N 244 TRP NE1 CE2 sing Y N 245 TRP NE1 HE1 sing N N 246 TRP CE2 CZ2 sing Y N 247 TRP CE3 CZ3 doub Y N 248 TRP CE3 HE3 sing N N 249 TRP CZ2 CH2 doub Y N 250 TRP CZ2 HZ2 sing N N 251 TRP CZ3 CH2 sing Y N 252 TRP CZ3 HZ3 sing N N 253 TRP CH2 HH2 sing N N 254 TRP OXT HXT sing N N 255 TYR N CA sing N N 256 TYR N H sing N N 257 TYR N H2 sing N N 258 TYR CA C sing N N 259 TYR CA CB sing N N 260 TYR CA HA sing N N 261 TYR C O doub N N 262 TYR C OXT sing N N 263 TYR CB CG sing N N 264 TYR CB HB2 sing N N 265 TYR CB HB3 sing N N 266 TYR CG CD1 doub Y N 267 TYR CG CD2 sing Y N 268 TYR CD1 CE1 sing Y N 269 TYR CD1 HD1 sing N N 270 TYR CD2 CE2 doub Y N 271 TYR CD2 HD2 sing N N 272 TYR CE1 CZ doub Y N 273 TYR CE1 HE1 sing N N 274 TYR CE2 CZ sing Y N 275 TYR CE2 HE2 sing N N 276 TYR CZ OH sing N N 277 TYR OH HH sing N N 278 TYR OXT HXT sing N N 279 VAL N CA sing N N 280 VAL N H sing N N 281 VAL N H2 sing N N 282 VAL CA C sing N N 283 VAL CA CB sing N N 284 VAL CA HA sing N N 285 VAL C O doub N N 286 VAL C OXT sing N N 287 VAL CB CG1 sing N N 288 VAL CB CG2 sing N N 289 VAL CB HB sing N N 290 VAL CG1 HG11 sing N N 291 VAL CG1 HG12 sing N N 292 VAL CG1 HG13 sing N N 293 VAL CG2 HG21 sing N N 294 VAL CG2 HG22 sing N N 295 VAL CG2 HG23 sing N N 296 VAL OXT HXT sing N N 297 # _em_ctf_correction.details 'Performed in RELION 3.1' _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 10864 _em_entity_assembly_naturalsource.organism 'Enterobacteria phage fd' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C5 _em_helical_entity.angular_rotation_per_subunit -35.46 _em_helical_entity.axial_rise_per_subunit 16.62 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 53.9 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 2.9 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9 OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.2 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 3.1 # _em_specimen.concentration ? _em_specimen.details 'fd phage in PBS' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 562 _em_virus_natural_host.organism 'Escherichia coli' _em_virus_natural_host.strain ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'UK Research and Innovation (UKRI)' 'United Kingdom' MC_UP_1201/31 1 'Human Frontier Science Program (HFSP)' France RGY0074/2021 2 'The Vallee Foundation Inc.' 'United States' 'Vallee Scholarship' 3 'Leverhulme Trust' 'United Kingdom' 'Philip Leverhulme Prize' 4 'European Molecular Biology Organization (EMBO)' 'European Union' 'EMBO YIP' 5 'The Lister Institute of Preventive Medicine' 'United Kingdom' 'Lister Prize' 6 'UK Research and Innovation (UKRI)' 'United Kingdom' MR/V022385/1 7 # _atom_sites.entry_id 8CH5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_