HEADER PEPTIDE BINDING PROTEIN 08-FEB-23 8CHG TITLE SH3 DOMAIN SOLVED BY THE EXACT SOLID-STATE METHOD FROM THE BRUKER TITLE 2 DYNAMICS CENTER USING THE CORRECTION FOR DIPOLAR TRUNCATION WITH PDB TITLE 3 2NUZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECTRIN ALPHA CHAIN, NON-ERYTHROCYTIC 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-II SPECTRIN,FODRIN ALPHA CHAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SPTAN1, SPTA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SOLID-STATE NMR SPECTROSCOPY, STRUCTURE ELUCIDATION, INTEGRATED KEYWDS 2 STRUCTURAL BIOLOGY, PROTEIN DYNAMICS, PEPTIDE BINDING PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR B.SOELDNER REVDAT 2 19-JUN-24 8CHG 1 REMARK REVDAT 1 08-MAR-23 8CHG 0 JRNL AUTH B.SOLDNER,K.GROHE,P.NEIDIG,J.AUCH,S.BLACH,A.KLEIN,S.K.VASA, JRNL AUTH 2 L.V.SCHAFER,R.LINSER JRNL TITL INTEGRATED ASSESSMENT OF THE STRUCTURE AND DYNAMICS OF SOLID JRNL TITL 2 PROTEINS. JRNL REF J PHYS CHEM LETT V. 14 1725 2023 JRNL REFN ESSN 1948-7185 JRNL PMID 36757335 JRNL DOI 10.1021/ACS.JPCLETT.2C03398 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT OF THE 10 LOWEST REMARK 3 ENERGY STRUCTURES REMARK 4 REMARK 4 8CHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128258. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 NA [U-100% 13C; U-100% 15N] REMARK 210 SH3 OF CHICKEN ALPHA-SPECTRIN, REMARK 210 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D S2B PULSE SEQUENCE WITH MOCCA REMARK 210 -MIXING BETWEEN CARBONS; 5D S2B REMARK 210 COMBINED WITH A SIMULTANEOUS 4D REMARK 210 HCCH; 15 TIME-SHARED 15N/13C- REMARK 210 EDITED H-RFDR-H(N/C)H RFDR PULSE REMARK 210 SEQUENCE WITH 1H-1H HOMONUCLEAR REMARK 210 MIXING TIMES FROM 150 US TO 1.9 REMARK 210 MS REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3.2, CCPNMR ANALYSIS REMARK 210 2.5.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 47 -80.58 64.02 REMARK 500 2 ASN A 47 -72.94 68.38 REMARK 500 2 ASP A 48 2.30 -153.84 REMARK 500 3 GLU A 7 109.52 67.39 REMARK 500 3 LYS A 18 -67.87 -103.38 REMARK 500 3 SER A 36 45.71 -99.75 REMARK 500 3 ASN A 47 -70.77 65.78 REMARK 500 3 ASP A 48 -45.44 -131.58 REMARK 500 4 ASN A 47 -81.59 66.84 REMARK 500 5 ASP A 2 89.05 58.70 REMARK 500 5 GLU A 3 79.51 58.78 REMARK 500 5 LYS A 18 -44.67 -131.97 REMARK 500 5 ASN A 47 -61.38 66.89 REMARK 500 5 ASP A 48 -29.11 -147.95 REMARK 500 6 ASN A 47 -79.48 64.60 REMARK 500 7 ASN A 47 -84.35 63.56 REMARK 500 7 ASP A 48 19.71 -148.55 REMARK 500 8 GLU A 7 78.38 59.14 REMARK 500 8 LEU A 34 -60.94 -107.85 REMARK 500 8 SER A 36 42.80 -108.62 REMARK 500 8 ASN A 47 -87.15 61.57 REMARK 500 9 GLU A 3 82.53 -173.60 REMARK 500 9 LYS A 18 -58.35 -130.40 REMARK 500 9 ASN A 47 -84.35 63.03 REMARK 500 10 LEU A 34 -66.85 -96.25 REMARK 500 10 ASN A 47 -87.04 62.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NUZ RELATED DB: PDB REMARK 900 REFERENCE STRUCTURE FOR CORRECTION OF SPIN DIFFUSION AND DIPOLAR REMARK 900 TRUNCATION REMARK 900 RELATED ID: 34785 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS FROM SAME SAMPLE REMARK 900 RELATED ID: 34788 RELATED DB: BMRB REMARK 900 SH3 DOMAIN OF CHICKEN ALPHA SPECTRIN SOLVED BY SOLID-STATE NMR REMARK 900 RESTRAINTS WERE DETERMINED USING THE "EXACT SOLID-STATE DISTANCES" REMARK 900 MODULE NEWLY IMPLEMENTED IN THE BRUKER DYNAMICS CENTER. 15 TIME- REMARK 900 SHARED 15N/13C-EDITED 3D H(N/C)H-RFDR-H SPECTRA WERE USED FOR REMARK 900 DETERMINATION OF MAGNETISATION TRANSFER BUILDUP RATES D. THE REMARK 900 CORRECTION METHOD FOR DIPOLAR TRUNCATION WAS APPLIED USING THE X- REMARK 900 RAY STRUCTURE PDB 2NUZ AS TEMPLATE FOR THE CORRECTION METHOD. DBREF 8CHG A 2 62 UNP P07751 SPTN1_CHICK 965 1025 SEQADV 8CHG MET A 1 UNP P07751 INITIATING METHIONINE SEQRES 1 A 62 MET ASP GLU THR GLY LYS GLU LEU VAL LEU ALA LEU TYR SEQRES 2 A 62 ASP TYR GLN GLU LYS SER PRO ARG GLU VAL THR MET LYS SEQRES 3 A 62 LYS GLY ASP ILE LEU THR LEU LEU ASN SER THR ASN LYS SEQRES 4 A 62 ASP TRP TRP LYS VAL GLU VAL ASN ASP ARG GLN GLY PHE SEQRES 5 A 62 VAL PRO ALA ALA TYR VAL LYS LYS LEU ASP SHEET 1 AA1 5 ARG A 49 PRO A 54 0 SHEET 2 AA1 5 TRP A 41 VAL A 46 -1 N VAL A 46 O ARG A 49 SHEET 3 AA1 5 ILE A 30 ASN A 35 -1 N ASN A 35 O LYS A 43 SHEET 4 AA1 5 LEU A 8 ALA A 11 -1 N VAL A 9 O LEU A 31 SHEET 5 AA1 5 VAL A 58 LYS A 60 -1 O LYS A 59 N LEU A 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1