HEADER RNA BINDING PROTEIN 08-FEB-23 8CHT TITLE CRYSTAL STRUCTURE OF HUMAN PURA (FRAGMENT GLU57-GLU212, PUR REPEAT I TITLE 2 AND II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ACTIVATOR PROTEIN PUR-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PURINE-RICH SINGLE-STRANDED DNA-BINDING PROTEIN ALPHA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PURA, PUR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA/DNA BINDING, PUR REPEAT, PC4-LIKE FOLD, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,D.NIESSING REVDAT 2 08-MAY-24 8CHT 1 JRNL REVDAT 1 21-FEB-24 8CHT 0 JRNL AUTH M.PROSKE,R.JANOWSKI,S.BACHER,H.S.KANG,T.MONECKE,T.KOEHLER, JRNL AUTH 2 S.HUTTEN,J.TRETTER,A.CROIS,L.MOLITOR,A.VARELA-RIAL,R.FINO, JRNL AUTH 3 E.DONATI,G.DE FABRITIIS,D.DORMANN,M.SATTLER,D.NIESSING JRNL TITL PURA SYNDROME-CAUSING MUTATIONS IMPAIR PUR-DOMAIN INTEGRITY JRNL TITL 2 AND AFFECT P-BODY ASSOCIATION. JRNL REF ELIFE V. 13 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38655849 JRNL DOI 10.7554/ELIFE.93561 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 41016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2122 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2983 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.155 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4746 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4580 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6365 ; 2.314 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10569 ; 1.157 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 7.087 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;31.790 ;22.903 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 904 ;16.682 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;20.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5322 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1050 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2717 -3.4485 -37.0732 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.0267 REMARK 3 T33: 0.0768 T12: -0.0125 REMARK 3 T13: -0.0152 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.5181 L22: 0.8020 REMARK 3 L33: 0.6912 L12: 0.2096 REMARK 3 L13: -0.2761 L23: 0.1379 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: 0.0304 S13: -0.0762 REMARK 3 S21: -0.0712 S22: 0.0500 S23: 0.0430 REMARK 3 S31: -0.0424 S32: -0.0068 S33: -0.0468 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 191 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2461 -3.5971 -37.4256 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: 0.0121 REMARK 3 T33: 0.1211 T12: -0.0029 REMARK 3 T13: -0.0168 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.4710 L22: 0.2185 REMARK 3 L33: 0.7724 L12: 0.1397 REMARK 3 L13: 0.0320 L23: 0.1630 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.0307 S13: -0.0786 REMARK 3 S21: -0.0036 S22: -0.0055 S23: 0.0693 REMARK 3 S31: -0.0348 S32: -0.0032 S33: -0.0201 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 36 C 191 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9056 5.4189 -7.9945 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.0405 REMARK 3 T33: 0.0496 T12: 0.0129 REMARK 3 T13: 0.0116 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.0932 L22: 0.2232 REMARK 3 L33: 1.3094 L12: 0.0713 REMARK 3 L13: 0.3198 L23: 0.3468 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: -0.0062 S13: 0.0045 REMARK 3 S21: 0.0334 S22: 0.0765 S23: -0.0237 REMARK 3 S31: 0.0039 S32: 0.0161 S33: -0.0826 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 36 D 191 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3038 3.6326 -8.4885 REMARK 3 T TENSOR REMARK 3 T11: 0.0726 T22: 0.0404 REMARK 3 T33: 0.0622 T12: -0.0174 REMARK 3 T13: 0.0625 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.3223 L22: 0.8381 REMARK 3 L33: 0.6975 L12: -0.3027 REMARK 3 L13: 0.4613 L23: -0.2896 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: -0.0567 S13: -0.0358 REMARK 3 S21: 0.0428 S22: 0.1510 S23: -0.0404 REMARK 3 S31: -0.1303 S32: -0.0557 S33: -0.0693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8CHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43138 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS BUFFER PH 8.2, 0.2 M SODIUM REMARK 280 ACETATE, AND 30% (W/V) PEG 4,000, VAPOR DIFFUSION, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.07000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 57 REMARK 465 PRO A 129 REMARK 465 PRO A 130 REMARK 465 ASP A 131 REMARK 465 LEU A 132 REMARK 465 ALA A 133 REMARK 465 GLN A 134 REMARK 465 ALA A 135 REMARK 465 GLN A 136 REMARK 465 ASP A 137 REMARK 465 GLU A 138 REMARK 465 PRO A 139 REMARK 465 ARG A 140 REMARK 465 GLU A 212 REMARK 465 GLU B 57 REMARK 465 PRO B 129 REMARK 465 PRO B 130 REMARK 465 ASP B 131 REMARK 465 LEU B 132 REMARK 465 ALA B 133 REMARK 465 GLN B 134 REMARK 465 ALA B 135 REMARK 465 GLN B 136 REMARK 465 ASP B 137 REMARK 465 GLU B 138 REMARK 465 PRO B 139 REMARK 465 GLU B 212 REMARK 465 PRO C 129 REMARK 465 PRO C 130 REMARK 465 ASP C 131 REMARK 465 LEU C 132 REMARK 465 ALA C 133 REMARK 465 GLN C 134 REMARK 465 ALA C 135 REMARK 465 GLN C 136 REMARK 465 ASP C 137 REMARK 465 GLU C 138 REMARK 465 PRO C 139 REMARK 465 ARG C 140 REMARK 465 PRO D 130 REMARK 465 ASP D 131 REMARK 465 LEU D 132 REMARK 465 ALA D 133 REMARK 465 GLN D 134 REMARK 465 ALA D 135 REMARK 465 GLN D 136 REMARK 465 ASP D 137 REMARK 465 GLU D 138 REMARK 465 PRO D 139 REMARK 465 ARG D 140 REMARK 465 GLU D 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 128 CA C O CB CG CD OE1 REMARK 470 GLN B 128 NE2 REMARK 470 ARG B 140 N CB CG CD NE CZ NH1 REMARK 470 ARG B 140 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 451 O HOH C 445 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 98 CB SER B 98 OG -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP B 76 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 76 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG B 99 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 150 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 MET B 157 CG - SD - CE ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG B 176 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 176 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG C 72 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG C 84 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 84 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG C 111 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP C 116 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG C 166 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG C 199 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG D 166 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG D 166 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG D 169 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG D 169 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG D 169 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP D 200 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 -120.82 46.16 REMARK 500 LEU A 180 80.38 3.59 REMARK 500 GLN B 69 -120.27 45.33 REMARK 500 ASN B 152 15.30 55.63 REMARK 500 ASN B 162 -167.88 -127.65 REMARK 500 LEU B 180 114.25 -24.77 REMARK 500 GLN C 69 -122.64 54.64 REMARK 500 ASN C 162 -160.54 -126.12 REMARK 500 THR C 183 172.13 -59.11 REMARK 500 VAL C 211 -67.17 -96.83 REMARK 500 GLN D 69 -119.93 50.57 REMARK 500 ASN D 80 -166.17 -128.20 REMARK 500 GLU D 151 -133.88 59.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CHT A 57 212 UNP Q00577 PURA_HUMAN 57 212 DBREF 8CHT B 57 212 UNP Q00577 PURA_HUMAN 57 212 DBREF 8CHT C 57 212 UNP Q00577 PURA_HUMAN 57 212 DBREF 8CHT D 57 212 UNP Q00577 PURA_HUMAN 57 212 SEQRES 1 A 156 GLU THR GLN GLU LEU ALA SER LYS ARG VAL ASP ILE GLN SEQRES 2 A 156 ASN LYS ARG PHE TYR LEU ASP VAL LYS GLN ASN ALA LYS SEQRES 3 A 156 GLY ARG PHE LEU LYS ILE ALA GLU VAL GLY ALA GLY GLY SEQRES 4 A 156 ASN LYS SER ARG LEU THR LEU SER MET SER VAL ALA VAL SEQRES 5 A 156 GLU PHE ARG ASP TYR LEU GLY ASP PHE ILE GLU HIS TYR SEQRES 6 A 156 ALA GLN LEU GLY PRO SER GLN PRO PRO ASP LEU ALA GLN SEQRES 7 A 156 ALA GLN ASP GLU PRO ARG ARG ALA LEU LYS SER GLU PHE SEQRES 8 A 156 LEU VAL ARG GLU ASN ARG LYS TYR TYR MET ASP LEU LYS SEQRES 9 A 156 GLU ASN GLN ARG GLY ARG PHE LEU ARG ILE ARG GLN THR SEQRES 10 A 156 VAL ASN ARG GLY PRO GLY LEU GLY SER THR GLN GLY GLN SEQRES 11 A 156 THR ILE ALA LEU PRO ALA GLN GLY LEU ILE GLU PHE ARG SEQRES 12 A 156 ASP ALA LEU ALA LYS LEU ILE ASP ASP TYR GLY VAL GLU SEQRES 1 B 156 GLU THR GLN GLU LEU ALA SER LYS ARG VAL ASP ILE GLN SEQRES 2 B 156 ASN LYS ARG PHE TYR LEU ASP VAL LYS GLN ASN ALA LYS SEQRES 3 B 156 GLY ARG PHE LEU LYS ILE ALA GLU VAL GLY ALA GLY GLY SEQRES 4 B 156 ASN LYS SER ARG LEU THR LEU SER MET SER VAL ALA VAL SEQRES 5 B 156 GLU PHE ARG ASP TYR LEU GLY ASP PHE ILE GLU HIS TYR SEQRES 6 B 156 ALA GLN LEU GLY PRO SER GLN PRO PRO ASP LEU ALA GLN SEQRES 7 B 156 ALA GLN ASP GLU PRO ARG ARG ALA LEU LYS SER GLU PHE SEQRES 8 B 156 LEU VAL ARG GLU ASN ARG LYS TYR TYR MET ASP LEU LYS SEQRES 9 B 156 GLU ASN GLN ARG GLY ARG PHE LEU ARG ILE ARG GLN THR SEQRES 10 B 156 VAL ASN ARG GLY PRO GLY LEU GLY SER THR GLN GLY GLN SEQRES 11 B 156 THR ILE ALA LEU PRO ALA GLN GLY LEU ILE GLU PHE ARG SEQRES 12 B 156 ASP ALA LEU ALA LYS LEU ILE ASP ASP TYR GLY VAL GLU SEQRES 1 C 156 GLU THR GLN GLU LEU ALA SER LYS ARG VAL ASP ILE GLN SEQRES 2 C 156 ASN LYS ARG PHE TYR LEU ASP VAL LYS GLN ASN ALA LYS SEQRES 3 C 156 GLY ARG PHE LEU LYS ILE ALA GLU VAL GLY ALA GLY GLY SEQRES 4 C 156 ASN LYS SER ARG LEU THR LEU SER MET SER VAL ALA VAL SEQRES 5 C 156 GLU PHE ARG ASP TYR LEU GLY ASP PHE ILE GLU HIS TYR SEQRES 6 C 156 ALA GLN LEU GLY PRO SER GLN PRO PRO ASP LEU ALA GLN SEQRES 7 C 156 ALA GLN ASP GLU PRO ARG ARG ALA LEU LYS SER GLU PHE SEQRES 8 C 156 LEU VAL ARG GLU ASN ARG LYS TYR TYR MET ASP LEU LYS SEQRES 9 C 156 GLU ASN GLN ARG GLY ARG PHE LEU ARG ILE ARG GLN THR SEQRES 10 C 156 VAL ASN ARG GLY PRO GLY LEU GLY SER THR GLN GLY GLN SEQRES 11 C 156 THR ILE ALA LEU PRO ALA GLN GLY LEU ILE GLU PHE ARG SEQRES 12 C 156 ASP ALA LEU ALA LYS LEU ILE ASP ASP TYR GLY VAL GLU SEQRES 1 D 156 GLU THR GLN GLU LEU ALA SER LYS ARG VAL ASP ILE GLN SEQRES 2 D 156 ASN LYS ARG PHE TYR LEU ASP VAL LYS GLN ASN ALA LYS SEQRES 3 D 156 GLY ARG PHE LEU LYS ILE ALA GLU VAL GLY ALA GLY GLY SEQRES 4 D 156 ASN LYS SER ARG LEU THR LEU SER MET SER VAL ALA VAL SEQRES 5 D 156 GLU PHE ARG ASP TYR LEU GLY ASP PHE ILE GLU HIS TYR SEQRES 6 D 156 ALA GLN LEU GLY PRO SER GLN PRO PRO ASP LEU ALA GLN SEQRES 7 D 156 ALA GLN ASP GLU PRO ARG ARG ALA LEU LYS SER GLU PHE SEQRES 8 D 156 LEU VAL ARG GLU ASN ARG LYS TYR TYR MET ASP LEU LYS SEQRES 9 D 156 GLU ASN GLN ARG GLY ARG PHE LEU ARG ILE ARG GLN THR SEQRES 10 D 156 VAL ASN ARG GLY PRO GLY LEU GLY SER THR GLN GLY GLN SEQRES 11 D 156 THR ILE ALA LEU PRO ALA GLN GLY LEU ILE GLU PHE ARG SEQRES 12 D 156 ASP ALA LEU ALA LYS LEU ILE ASP ASP TYR GLY VAL GLU HET ACT A 301 4 HET ACT B 301 4 HET EDO C 301 4 HET ACT D 301 4 HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 7 EDO C2 H6 O2 FORMUL 9 HOH *311(H2 O) HELIX 1 AA1 MET A 104 GLN A 123 1 20 HELIX 2 AA2 GLY A 194 GLY A 210 1 17 HELIX 3 AA3 MET B 104 GLN B 123 1 20 HELIX 4 AA4 GLY B 194 GLY B 210 1 17 HELIX 5 AA5 MET C 104 GLN C 123 1 20 HELIX 6 AA6 GLY C 194 GLY C 210 1 17 HELIX 7 AA7 GLY D 94 LYS D 97 5 4 HELIX 8 AA8 MET D 104 GLN D 123 1 20 HELIX 9 AA9 GLY D 194 GLY D 210 1 17 SHEET 1 AA1 4 GLN A 59 ILE A 68 0 SHEET 2 AA1 4 LYS A 71 ASN A 80 -1 O PHE A 73 N VAL A 66 SHEET 3 AA1 4 GLY A 83 VAL A 91 -1 O PHE A 85 N LYS A 78 SHEET 4 AA1 4 ASN A 96 SER A 103 -1 O LEU A 102 N LEU A 86 SHEET 1 AA2 4 LYS A 144 ARG A 150 0 SHEET 2 AA2 4 ARG A 153 ASN A 162 -1 O MET A 157 N GLU A 146 SHEET 3 AA2 4 GLY A 165 VAL A 174 -1 O ARG A 171 N TYR A 156 SHEET 4 AA2 4 THR A 187 PRO A 191 -1 O LEU A 190 N LEU A 168 SHEET 1 AA3 4 GLN B 59 ILE B 68 0 SHEET 2 AA3 4 LYS B 71 ASN B 80 -1 O PHE B 73 N VAL B 66 SHEET 3 AA3 4 GLY B 83 VAL B 91 -1 O PHE B 85 N LYS B 78 SHEET 4 AA3 4 ASN B 96 SER B 103 -1 O LEU B 102 N LEU B 86 SHEET 1 AA4 4 LYS B 144 ARG B 150 0 SHEET 2 AA4 4 ARG B 153 GLU B 161 -1 O TYR B 155 N LEU B 148 SHEET 3 AA4 4 ARG B 166 VAL B 174 -1 O PHE B 167 N LYS B 160 SHEET 4 AA4 4 THR B 187 PRO B 191 -1 O LEU B 190 N LEU B 168 SHEET 1 AA5 4 GLN C 59 ILE C 68 0 SHEET 2 AA5 4 LYS C 71 ASN C 80 -1 O GLN C 79 N GLN C 59 SHEET 3 AA5 4 GLY C 83 VAL C 91 -1 O PHE C 85 N LYS C 78 SHEET 4 AA5 4 LYS C 97 SER C 103 -1 O LEU C 102 N LEU C 86 SHEET 1 AA6 4 LYS C 144 ARG C 150 0 SHEET 2 AA6 4 ARG C 153 GLU C 161 -1 O MET C 157 N GLU C 146 SHEET 3 AA6 4 ARG C 166 GLY C 177 -1 O ARG C 169 N ASP C 158 SHEET 4 AA6 4 GLY C 181 SER C 182 -1 O GLY C 181 N ARG C 176 SHEET 1 AA7 4 LYS C 144 ARG C 150 0 SHEET 2 AA7 4 ARG C 153 GLU C 161 -1 O MET C 157 N GLU C 146 SHEET 3 AA7 4 ARG C 166 GLY C 177 -1 O ARG C 169 N ASP C 158 SHEET 4 AA7 4 GLN C 186 PRO C 191 -1 O GLN C 186 N GLN C 172 SHEET 1 AA8 4 GLN D 59 ILE D 68 0 SHEET 2 AA8 4 LYS D 71 GLN D 79 -1 O VAL D 77 N LEU D 61 SHEET 3 AA8 4 ARG D 84 GLU D 90 -1 O PHE D 85 N LYS D 78 SHEET 4 AA8 4 ARG D 99 SER D 103 -1 O LEU D 102 N LEU D 86 SHEET 1 AA9 4 LYS D 144 ARG D 150 0 SHEET 2 AA9 4 ARG D 153 ASN D 162 -1 O LEU D 159 N LYS D 144 SHEET 3 AA9 4 GLY D 165 GLY D 177 -1 O PHE D 167 N LYS D 160 SHEET 4 AA9 4 GLY D 181 SER D 182 -1 O GLY D 181 N ARG D 176 SHEET 1 AB1 4 LYS D 144 ARG D 150 0 SHEET 2 AB1 4 ARG D 153 ASN D 162 -1 O LEU D 159 N LYS D 144 SHEET 3 AB1 4 GLY D 165 GLY D 177 -1 O PHE D 167 N LYS D 160 SHEET 4 AB1 4 GLN D 186 PRO D 191 -1 O ILE D 188 N ILE D 170 CRYST1 64.920 58.140 81.940 90.00 100.65 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015404 0.000000 0.002898 0.00000 SCALE2 0.000000 0.017200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012418 0.00000