HEADER RNA BINDING PROTEIN 08-FEB-23 8CHV TITLE CRYSTAL STRUCTURE OF HUMAN PURA (FRAGMENT GLU57-GLU212, PUR REPEAT I TITLE 2 AND II) R140P MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ACTIVATOR PROTEIN PUR-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PURINE-RICH SINGLE-STRANDED DNA-BINDING PROTEIN ALPHA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PURA, PUR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA/DNA BINDING, PUR REPEAT, PC4-LIKE FOLD, RNA BINDING PROTEIN, PURA KEYWDS 2 SYNDROME EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,D.NIESSING REVDAT 2 08-MAY-24 8CHV 1 JRNL REVDAT 1 21-FEB-24 8CHV 0 JRNL AUTH M.PROSKE,R.JANOWSKI,S.BACHER,H.S.KANG,T.MONECKE,T.KOEHLER, JRNL AUTH 2 S.HUTTEN,J.TRETTER,A.CROIS,L.MOLITOR,A.VARELA-RIAL,R.FINO, JRNL AUTH 3 E.DONATI,G.DE FABRITIIS,D.DORMANN,M.SATTLER,D.NIESSING JRNL TITL PURA SYNDROME-CAUSING MUTATIONS IMPAIR PUR-DOMAIN INTEGRITY JRNL TITL 2 AND AFFECT P-BODY ASSOCIATION. JRNL REF ELIFE V. 13 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38655849 JRNL DOI 10.7554/ELIFE.93561 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2191 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.31000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : -1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4663 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4365 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6247 ; 1.455 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10166 ; 0.493 ; 1.563 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 566 ; 7.867 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ; 8.280 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 876 ;18.807 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5424 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 960 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9327 0.4661 7.7234 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0144 REMARK 3 T33: 0.1187 T12: 0.0005 REMARK 3 T13: -0.0101 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.7488 L22: 3.2358 REMARK 3 L33: 2.7768 L12: -0.0174 REMARK 3 L13: 0.6029 L23: -0.5710 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0356 S13: -0.0228 REMARK 3 S21: -0.1386 S22: 0.0428 S23: 0.3859 REMARK 3 S31: -0.1595 S32: -0.1653 S33: -0.0430 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1034 -8.9836 36.0093 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.0427 REMARK 3 T33: 0.0684 T12: -0.0142 REMARK 3 T13: -0.0432 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.0374 L22: 2.4356 REMARK 3 L33: 3.9585 L12: 0.2733 REMARK 3 L13: 0.8539 L23: 0.2291 REMARK 3 S TENSOR REMARK 3 S11: 0.1230 S12: -0.1452 S13: -0.1324 REMARK 3 S21: 0.2768 S22: 0.0800 S23: -0.1773 REMARK 3 S31: -0.0134 S32: 0.1085 S33: -0.2029 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 57 C 211 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2005 -8.4536 38.0906 REMARK 3 T TENSOR REMARK 3 T11: 0.2304 T22: 0.0496 REMARK 3 T33: 0.1918 T12: -0.0313 REMARK 3 T13: -0.0970 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.2061 L22: 1.6907 REMARK 3 L33: 4.3505 L12: -1.4186 REMARK 3 L13: 1.7300 L23: -1.5028 REMARK 3 S TENSOR REMARK 3 S11: 0.2235 S12: -0.1125 S13: -0.3771 REMARK 3 S21: 0.2446 S22: 0.0495 S23: 0.1537 REMARK 3 S31: 0.1669 S32: -0.1120 S33: -0.2730 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 58 D 212 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2474 -0.3462 8.3215 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.1389 REMARK 3 T33: 0.0883 T12: 0.0407 REMARK 3 T13: -0.0003 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.6528 L22: 2.2014 REMARK 3 L33: 5.7120 L12: -0.6457 REMARK 3 L13: 1.2300 L23: -0.2619 REMARK 3 S TENSOR REMARK 3 S11: 0.2646 S12: 0.5306 S13: -0.0221 REMARK 3 S21: -0.0512 S22: 0.0173 S23: -0.0522 REMARK 3 S31: -0.0749 S32: 0.5171 S33: -0.2819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8CHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32410 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 20 MM HEPES, 2 MM DTT, REMARK 280 SMALL TUBES, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.78650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 129 REMARK 465 PRO A 130 REMARK 465 ASP A 131 REMARK 465 LEU A 132 REMARK 465 ALA A 133 REMARK 465 GLN A 134 REMARK 465 ALA A 135 REMARK 465 GLN A 136 REMARK 465 ASP A 137 REMARK 465 GLU A 138 REMARK 465 LEU B 132 REMARK 465 ALA B 133 REMARK 465 GLN B 134 REMARK 465 ALA B 135 REMARK 465 GLN B 136 REMARK 465 ASP B 137 REMARK 465 GLU B 138 REMARK 465 PRO B 139 REMARK 465 PRO B 140 REMARK 465 GLY C 92 REMARK 465 ALA C 93 REMARK 465 GLY C 94 REMARK 465 GLY C 95 REMARK 465 ASN C 96 REMARK 465 LYS C 97 REMARK 465 GLN C 128 REMARK 465 PRO C 129 REMARK 465 PRO C 130 REMARK 465 ASP C 131 REMARK 465 LEU C 132 REMARK 465 ALA C 133 REMARK 465 GLN C 134 REMARK 465 ALA C 135 REMARK 465 GLN C 136 REMARK 465 ASP C 137 REMARK 465 GLU C 138 REMARK 465 PRO C 139 REMARK 465 PRO C 140 REMARK 465 ARG C 141 REMARK 465 GLU C 212 REMARK 465 GLU D 57 REMARK 465 GLN D 128 REMARK 465 PRO D 129 REMARK 465 PRO D 130 REMARK 465 ASP D 131 REMARK 465 LEU D 132 REMARK 465 ALA D 133 REMARK 465 GLN D 134 REMARK 465 ALA D 135 REMARK 465 GLN D 136 REMARK 465 ASP D 137 REMARK 465 GLU D 138 REMARK 465 PRO D 139 REMARK 465 PRO D 140 REMARK 465 ARG D 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY C 181 N - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 -121.79 51.66 REMARK 500 GLN A 69 -119.72 51.66 REMARK 500 ALA A 93 -55.28 71.60 REMARK 500 SER A 98 58.86 -106.68 REMARK 500 PRO A 140 143.04 -36.89 REMARK 500 ASN A 162 -169.95 -123.48 REMARK 500 VAL A 211 -69.15 -103.48 REMARK 500 GLN B 69 -124.18 50.42 REMARK 500 ASN B 80 -169.52 -120.82 REMARK 500 PRO B 130 167.01 -48.15 REMARK 500 GLU B 151 -115.01 51.88 REMARK 500 ASN B 162 -168.37 -124.24 REMARK 500 ALA C 62 141.92 -170.33 REMARK 500 GLN C 69 -123.14 46.01 REMARK 500 ASN C 70 63.99 -114.49 REMARK 500 ASN C 152 2.82 80.57 REMARK 500 THR C 183 -12.72 -149.03 REMARK 500 GLN D 69 -114.30 50.15 REMARK 500 LYS D 82 -22.98 103.37 REMARK 500 GLU D 151 -114.13 57.27 REMARK 500 PRO D 178 88.09 -29.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CHV A 57 212 UNP Q00577 PURA_HUMAN 57 212 DBREF 8CHV B 57 212 UNP Q00577 PURA_HUMAN 57 212 DBREF 8CHV C 57 212 UNP Q00577 PURA_HUMAN 57 212 DBREF 8CHV D 57 212 UNP Q00577 PURA_HUMAN 57 212 SEQADV 8CHV PRO A 140 UNP Q00577 ARG 140 ENGINEERED MUTATION SEQADV 8CHV PRO B 140 UNP Q00577 ARG 140 ENGINEERED MUTATION SEQADV 8CHV PRO C 140 UNP Q00577 ARG 140 ENGINEERED MUTATION SEQADV 8CHV PRO D 140 UNP Q00577 ARG 140 ENGINEERED MUTATION SEQRES 1 A 156 GLU THR GLN GLU LEU ALA SER LYS ARG VAL ASP ILE GLN SEQRES 2 A 156 ASN LYS ARG PHE TYR LEU ASP VAL LYS GLN ASN ALA LYS SEQRES 3 A 156 GLY ARG PHE LEU LYS ILE ALA GLU VAL GLY ALA GLY GLY SEQRES 4 A 156 ASN LYS SER ARG LEU THR LEU SER MET SER VAL ALA VAL SEQRES 5 A 156 GLU PHE ARG ASP TYR LEU GLY ASP PHE ILE GLU HIS TYR SEQRES 6 A 156 ALA GLN LEU GLY PRO SER GLN PRO PRO ASP LEU ALA GLN SEQRES 7 A 156 ALA GLN ASP GLU PRO PRO ARG ALA LEU LYS SER GLU PHE SEQRES 8 A 156 LEU VAL ARG GLU ASN ARG LYS TYR TYR MET ASP LEU LYS SEQRES 9 A 156 GLU ASN GLN ARG GLY ARG PHE LEU ARG ILE ARG GLN THR SEQRES 10 A 156 VAL ASN ARG GLY PRO GLY LEU GLY SER THR GLN GLY GLN SEQRES 11 A 156 THR ILE ALA LEU PRO ALA GLN GLY LEU ILE GLU PHE ARG SEQRES 12 A 156 ASP ALA LEU ALA LYS LEU ILE ASP ASP TYR GLY VAL GLU SEQRES 1 B 156 GLU THR GLN GLU LEU ALA SER LYS ARG VAL ASP ILE GLN SEQRES 2 B 156 ASN LYS ARG PHE TYR LEU ASP VAL LYS GLN ASN ALA LYS SEQRES 3 B 156 GLY ARG PHE LEU LYS ILE ALA GLU VAL GLY ALA GLY GLY SEQRES 4 B 156 ASN LYS SER ARG LEU THR LEU SER MET SER VAL ALA VAL SEQRES 5 B 156 GLU PHE ARG ASP TYR LEU GLY ASP PHE ILE GLU HIS TYR SEQRES 6 B 156 ALA GLN LEU GLY PRO SER GLN PRO PRO ASP LEU ALA GLN SEQRES 7 B 156 ALA GLN ASP GLU PRO PRO ARG ALA LEU LYS SER GLU PHE SEQRES 8 B 156 LEU VAL ARG GLU ASN ARG LYS TYR TYR MET ASP LEU LYS SEQRES 9 B 156 GLU ASN GLN ARG GLY ARG PHE LEU ARG ILE ARG GLN THR SEQRES 10 B 156 VAL ASN ARG GLY PRO GLY LEU GLY SER THR GLN GLY GLN SEQRES 11 B 156 THR ILE ALA LEU PRO ALA GLN GLY LEU ILE GLU PHE ARG SEQRES 12 B 156 ASP ALA LEU ALA LYS LEU ILE ASP ASP TYR GLY VAL GLU SEQRES 1 C 156 GLU THR GLN GLU LEU ALA SER LYS ARG VAL ASP ILE GLN SEQRES 2 C 156 ASN LYS ARG PHE TYR LEU ASP VAL LYS GLN ASN ALA LYS SEQRES 3 C 156 GLY ARG PHE LEU LYS ILE ALA GLU VAL GLY ALA GLY GLY SEQRES 4 C 156 ASN LYS SER ARG LEU THR LEU SER MET SER VAL ALA VAL SEQRES 5 C 156 GLU PHE ARG ASP TYR LEU GLY ASP PHE ILE GLU HIS TYR SEQRES 6 C 156 ALA GLN LEU GLY PRO SER GLN PRO PRO ASP LEU ALA GLN SEQRES 7 C 156 ALA GLN ASP GLU PRO PRO ARG ALA LEU LYS SER GLU PHE SEQRES 8 C 156 LEU VAL ARG GLU ASN ARG LYS TYR TYR MET ASP LEU LYS SEQRES 9 C 156 GLU ASN GLN ARG GLY ARG PHE LEU ARG ILE ARG GLN THR SEQRES 10 C 156 VAL ASN ARG GLY PRO GLY LEU GLY SER THR GLN GLY GLN SEQRES 11 C 156 THR ILE ALA LEU PRO ALA GLN GLY LEU ILE GLU PHE ARG SEQRES 12 C 156 ASP ALA LEU ALA LYS LEU ILE ASP ASP TYR GLY VAL GLU SEQRES 1 D 156 GLU THR GLN GLU LEU ALA SER LYS ARG VAL ASP ILE GLN SEQRES 2 D 156 ASN LYS ARG PHE TYR LEU ASP VAL LYS GLN ASN ALA LYS SEQRES 3 D 156 GLY ARG PHE LEU LYS ILE ALA GLU VAL GLY ALA GLY GLY SEQRES 4 D 156 ASN LYS SER ARG LEU THR LEU SER MET SER VAL ALA VAL SEQRES 5 D 156 GLU PHE ARG ASP TYR LEU GLY ASP PHE ILE GLU HIS TYR SEQRES 6 D 156 ALA GLN LEU GLY PRO SER GLN PRO PRO ASP LEU ALA GLN SEQRES 7 D 156 ALA GLN ASP GLU PRO PRO ARG ALA LEU LYS SER GLU PHE SEQRES 8 D 156 LEU VAL ARG GLU ASN ARG LYS TYR TYR MET ASP LEU LYS SEQRES 9 D 156 GLU ASN GLN ARG GLY ARG PHE LEU ARG ILE ARG GLN THR SEQRES 10 D 156 VAL ASN ARG GLY PRO GLY LEU GLY SER THR GLN GLY GLN SEQRES 11 D 156 THR ILE ALA LEU PRO ALA GLN GLY LEU ILE GLU PHE ARG SEQRES 12 D 156 ASP ALA LEU ALA LYS LEU ILE ASP ASP TYR GLY VAL GLU FORMUL 5 HOH *197(H2 O) HELIX 1 AA1 MET A 104 LEU A 124 1 21 HELIX 2 AA2 GLY A 194 GLY A 210 1 17 HELIX 3 AA3 MET B 104 LEU B 124 1 21 HELIX 4 AA4 THR B 183 GLY B 185 5 3 HELIX 5 AA5 GLY B 194 GLY B 210 1 17 HELIX 6 AA6 MET C 104 GLY C 125 1 22 HELIX 7 AA7 GLY C 194 GLY C 210 1 17 HELIX 8 AA8 GLY D 94 LYS D 97 5 4 HELIX 9 AA9 MET D 104 GLN D 123 1 20 HELIX 10 AB1 GLY D 194 GLY D 210 1 17 SHEET 1 AA1 4 GLN A 59 ILE A 68 0 SHEET 2 AA1 4 LYS A 71 ASN A 80 -1 O LEU A 75 N LYS A 64 SHEET 3 AA1 4 GLY A 83 VAL A 91 -1 O LYS A 87 N ASP A 76 SHEET 4 AA1 4 ARG A 99 SER A 103 -1 O LEU A 102 N LEU A 86 SHEET 1 AA2 4 ARG A 141 ARG A 150 0 SHEET 2 AA2 4 ARG A 153 ASN A 162 -1 O LEU A 159 N LYS A 144 SHEET 3 AA2 4 GLY A 165 VAL A 174 -1 O ARG A 171 N TYR A 156 SHEET 4 AA2 4 GLN A 186 PRO A 191 -1 O GLN A 186 N GLN A 172 SHEET 1 AA3 4 GLN B 59 ILE B 68 0 SHEET 2 AA3 4 LYS B 71 GLN B 79 -1 O VAL B 77 N LEU B 61 SHEET 3 AA3 4 ARG B 84 VAL B 91 -1 O PHE B 85 N LYS B 78 SHEET 4 AA3 4 LYS B 97 SER B 103 -1 O LEU B 102 N LEU B 86 SHEET 1 AA4 4 LYS B 144 ARG B 150 0 SHEET 2 AA4 4 ARG B 153 ASN B 162 -1 O LEU B 159 N LYS B 144 SHEET 3 AA4 4 GLY B 165 VAL B 174 -1 O ARG B 171 N TYR B 156 SHEET 4 AA4 4 THR B 187 PRO B 191 -1 O LEU B 190 N LEU B 168 SHEET 1 AA5 3 GLN C 59 ALA C 62 0 SHEET 2 AA5 3 LYS C 71 ASN C 80 -1 O VAL C 77 N LEU C 61 SHEET 3 AA5 3 ARG C 65 ILE C 68 -1 N ILE C 68 O LYS C 71 SHEET 1 AA6 4 GLN C 59 ALA C 62 0 SHEET 2 AA6 4 LYS C 71 ASN C 80 -1 O VAL C 77 N LEU C 61 SHEET 3 AA6 4 GLY C 83 GLU C 90 -1 O LYS C 87 N ASP C 76 SHEET 4 AA6 4 ARG C 99 SER C 103 -1 O LEU C 102 N LEU C 86 SHEET 1 AA7 4 LYS C 144 ARG C 150 0 SHEET 2 AA7 4 ARG C 153 ASN C 162 -1 O TYR C 155 N LEU C 148 SHEET 3 AA7 4 GLY C 165 VAL C 174 -1 O THR C 173 N LYS C 154 SHEET 4 AA7 4 GLN C 186 PRO C 191 -1 O ILE C 188 N ILE C 170 SHEET 1 AA8 4 GLN D 59 ILE D 68 0 SHEET 2 AA8 4 LYS D 71 ASN D 80 -1 O LEU D 75 N LYS D 64 SHEET 3 AA8 4 GLY D 83 GLU D 90 -1 O PHE D 85 N LYS D 78 SHEET 4 AA8 4 ARG D 99 SER D 103 -1 O LEU D 102 N LEU D 86 SHEET 1 AA9 4 LYS D 144 ARG D 150 0 SHEET 2 AA9 4 ARG D 153 ASN D 162 -1 O TYR D 155 N LEU D 148 SHEET 3 AA9 4 GLY D 165 VAL D 174 -1 O ARG D 171 N TYR D 156 SHEET 4 AA9 4 GLN D 186 PRO D 191 -1 O GLN D 186 N GLN D 172 CRYST1 63.307 57.573 84.879 90.00 102.33 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015796 0.000000 0.003454 0.00000 SCALE2 0.000000 0.017369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012060 0.00000