HEADER TRANSPORT PROTEIN 13-FEB-23 8CJU TITLE PBP ACCA FROM A. VITIS S4 IN COMPLEX WITH AGROCIN84 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER SUBSTRATE BINDING PROTEIN (AGROCINOPINE); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALLORHIZOBIUM AMPELINUM S4; SOURCE 3 ORGANISM_TAXID: 311402; SOURCE 4 GENE: ACCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PERIPLASMIC BINDING PROTEIN, SOLUTE BINDING PROTEIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX REVDAT 2 07-FEB-24 8CJU 1 JRNL REVDAT 1 24-JAN-24 8CJU 0 JRNL AUTH S.MORERA,A.VIGOUROUX,M.AUMONT-NICAISE,M.AHMAR,T.MEYER, JRNL AUTH 2 A.EL SAHILI,G.DEICSICS,A.GONZALEZ-MULA,S.LI,J.DORE,S.SIRIGU, JRNL AUTH 3 P.LEGRAND,C.PENOT,F.ANDRE,D.FAURE,L.SOULERE,Y.QUENEAU,L.VIAL JRNL TITL A HIGHLY CONSERVED LIGAND-BINDING SITE FOR ACCA TRANSPORTERS JRNL TITL 2 OF ANTIBIOTIC AND QUORUM-SENSING REGULATOR IN AGROBACTERIUM JRNL TITL 3 LEADS TO A DIFFERENT SPECIFICITY. JRNL REF BIOCHEM.J. V. 481 93 2024 JRNL REFN ESSN 1470-8728 JRNL PMID 38058289 JRNL DOI 10.1042/BCJ20230273 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 96419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4821 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3347 REMARK 3 BIN FREE R VALUE : 0.3107 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 96 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 496 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.41640 REMARK 3 B22 (A**2) : 4.43150 REMARK 3 B33 (A**2) : -0.01500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.073 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.073 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.077 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.070 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7856 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 14219 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2296 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1211 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7856 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 521 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7676 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 5.10 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 11.72 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 38.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.06500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRIS-HCL, PH 8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.50500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.94500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.94500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.50500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CONJUGATE CONTAINS ALPHA-D-GLUCOSE (GLC) AND PURINE (ADE). THE REMARK 400 NUCLEOSIDE CORE, WHICH IS ESSENTIAL FOR TOXICITY, CONTAINS 3'- REMARK 400 DEOXYARABINOSE RATHER THAN RIBOSE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 29 REMARK 465 ALA A 30 REMARK 465 PHE A 509 REMARK 465 GLU A 510 REMARK 465 MET A 511 REMARK 465 MET A 512 REMARK 465 GLU A 513 REMARK 465 PHE A 514 REMARK 465 ARG A 515 REMARK 465 ASN A 516 REMARK 465 ASN A 517 REMARK 465 LEU A 518 REMARK 465 ALA A 519 REMARK 465 PHE A 520 REMARK 465 GLY A 521 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 362 O THR A 365 1.53 REMARK 500 HH TYR A 375 OAE UKU A 601 1.55 REMARK 500 OE1 GLU A 115 HH TYR A 158 1.57 REMARK 500 HD22 ASN A 334 O HOH A 725 1.59 REMARK 500 HH TYR A 335 OE1 GLN A 422 1.59 REMARK 500 HZ1 LYS A 234 O HOH A 708 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 109 SD MET A 109 CE -0.340 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 -177.65 -179.21 REMARK 500 SER A 87 -107.91 -145.11 REMARK 500 ASP A 215 -64.19 -142.81 REMARK 500 ASN A 331 111.53 -161.50 REMARK 500 ASN A 349 87.51 -153.14 REMARK 500 ASN A 374 44.53 -107.80 REMARK 500 TYR A 414 -77.12 -125.32 REMARK 500 THR A 425 48.73 -91.01 REMARK 500 GLN A 462 11.55 -141.15 REMARK 500 SER A 466 -177.35 -177.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 255 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 433 12.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE NUTRIENT REMARK 630 MOLECULE NAME: [(2S,3R,4S,5S,6R)-6-(HYDROXYMETHYL)-2,4,5- REMARK 630 TRIS(OXIDANYL)OXAN-3-YL]OXY-N-[9-[(2R,3S,5R)-5-[[[(2R,3S)-4-METHYL- REMARK 630 2,3-BIS(OXIDANYL)PENTANOYL]AMINO]-OXIDANYL-PHOSPHORYL]OXY-3- REMARK 630 OXIDANYL-OXOLAN-2-YL]PURIN-6-YL]PHOSPHONAMIDIC ACID REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 UKU A 601 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: UNUSUAL GLYCAN PURINE CONJUGATE (CONTAINING GLC AND ADE) DBREF 8CJU A 29 521 UNP B9JXG4 B9JXG4_AGRVS 29 521 SEQADV 8CJU HIS A 522 UNP B9JXG4 EXPRESSION TAG SEQADV 8CJU HIS A 523 UNP B9JXG4 EXPRESSION TAG SEQADV 8CJU HIS A 524 UNP B9JXG4 EXPRESSION TAG SEQADV 8CJU HIS A 525 UNP B9JXG4 EXPRESSION TAG SEQADV 8CJU HIS A 526 UNP B9JXG4 EXPRESSION TAG SEQADV 8CJU HIS A 527 UNP B9JXG4 EXPRESSION TAG SEQRES 1 A 499 SER ALA GLU ARG ARG ALA LEU LYS ILE GLY VAL ASN GLY SEQRES 2 A 499 ILE PRO VAL THR LEU GLU PRO ILE ASN ALA ILE SER ASN SEQRES 3 A 499 VAL GLY PRO ARG ILE VAL ASN GLN ILE PHE ASP THR LEU SEQRES 4 A 499 VAL VAL ARG ASP PHE PHE SER ASN GLY ALA PRO GLY ASN SEQRES 5 A 499 GLY ILE ASN LEU MET PRO SER LEU ALA GLU SER TRP GLU SEQRES 6 A 499 ARG ILE ASP ASP LYS SER VAL ARG PHE LYS LEU ARG GLN SEQRES 7 A 499 LYS VAL MET PHE HIS ASP GLY VAL GLU MET THR ALA ASP SEQRES 8 A 499 ASP VAL ALA TYR THR PHE SER SER GLU ARG LEU TRP GLY SEQRES 9 A 499 PRO ASP ALA ILE LYS VAL ILE PRO LEU GLY GLY SER TYR SEQRES 10 A 499 ALA LEU ASP PHE ASP GLU PRO VAL VAL GLU ASP LYS TYR SEQRES 11 A 499 THR VAL VAL ILE ARG THR LYS THR PRO THR PRO LEU THR SEQRES 12 A 499 GLU SER TYR MET ALA SER TRP MET GLY ARG ILE VAL PRO SEQRES 13 A 499 LYS ALA TYR TYR LYS THR LEU GLY THR ALA ALA PHE GLY SEQRES 14 A 499 ASN LYS PRO VAL GLY THR GLY PRO TYR LYS PHE VAL GLU SEQRES 15 A 499 PHE VAL ALA ASN ASP ARG VAL VAL ILE GLU ALA ASN ASP SEQRES 16 A 499 ALA TYR TRP GLY LEU LYS PRO THR ALA SER LYS ILE THR SEQRES 17 A 499 TYR GLN LEU VAL ALA GLU PRO ALA THR ARG VAL ALA GLY SEQRES 18 A 499 LEU ILE SER GLY GLU TYR ASP ILE VAL THR THR LEU THR SEQRES 19 A 499 PRO ASP ASP MET ALA LEU ILE ASN SER TYR PRO ASP LEU SEQRES 20 A 499 GLU THR ARG GLY ASN ILE VAL GLU ASN PHE HIS MET PHE SEQRES 21 A 499 THR PHE ASN MET ASN GLN PRO VAL PHE GLN SER LYS PRO SEQRES 22 A 499 LEU ARG ARG ALA LEU ALA LEU ALA VAL ASN ARG PRO LEU SEQRES 23 A 499 ILE VAL GLN SER LEU TRP MET ASN LYS ALA THR ILE PRO SEQRES 24 A 499 ASN GLY PHE ASN PHE PRO ASN TYR GLY LYS THR PHE ASP SEQRES 25 A 499 PRO ASN ARG ARG ALA MET GLU TYR ASN ILE GLU GLU ALA SEQRES 26 A 499 LYS ARG LEU VAL LYS GLU SER GLY TYR ASP GLY THR PRO SEQRES 27 A 499 ILE THR TYR HIS THR MET GLY ASN TYR TYR ALA ASN ALA SEQRES 28 A 499 VAL PRO ALA LEU MET MET MET ILE GLU MET TRP LYS GLN SEQRES 29 A 499 ILE GLY VAL THR VAL VAL PRO LYS VAL TYR ALA PRO GLY SEQRES 30 A 499 GLY ALA PRO LYS ASP GLN ASP SER TYR MET ARG ASN TRP SEQRES 31 A 499 SER ASN GLY GLN TRP MET THR ASP ALA TRP ALA THR MET SEQRES 32 A 499 ILE CYS GLU PHE GLY PRO LYS GLY GLN VAL GLN LYS ARG SEQRES 33 A 499 TRP GLY TRP LYS ALA PRO ALA GLU PHE ASN ASP LEU CYS SEQRES 34 A 499 THR LYS VAL SER GLN ILE PRO ASP SER LYS GLU ARG PHE SEQRES 35 A 499 ASP ALA PHE ASN ARG LEU ARG ASP ILE PHE GLU GLU GLU SEQRES 36 A 499 ALA PRO ALA VAL ILE LEU TYR GLN PRO PHE ASP VAL TYR SEQRES 37 A 499 ALA ALA ARG LYS ASP VAL HIS TRP ARG PRO ILE SER PHE SEQRES 38 A 499 GLU MET MET GLU PHE ARG ASN ASN LEU ALA PHE GLY HIS SEQRES 39 A 499 HIS HIS HIS HIS HIS HET UKU A 601 75 HETNAM UKU [(2S,3R,4S,5S,6R)-6-(HYDROXYMETHYL)-2,4,5- HETNAM 2 UKU TRIS(OXIDANYL)OXAN-3-YL]OXY-N-[9-[(2R,3S,5R)-5-[[[(2R, HETNAM 3 UKU 3S)-4-METHYL-2,3-BIS(OXIDANYL)PENTANOYL]AMINO]- HETNAM 4 UKU OXIDANYL-PHOSPHORYL]OXY-3-OXIDANYL-OXOLAN-2-YL]PURIN- HETNAM 5 UKU 6-YL]PHOSPHONAMIDIC ACID HETSYN UKU AGROCIN 84 (ALPHA-D-GLUCOPYRANOSE FORM) FORMUL 2 UKU C21 H34 N6 O16 P2 FORMUL 3 HOH *496(H2 O) HELIX 1 AA1 GLY A 56 PHE A 64 1 9 HELIX 2 AA2 PHE A 73 ALA A 77 5 5 HELIX 3 AA3 THR A 117 PHE A 125 1 9 HELIX 4 AA4 ASP A 134 ILE A 139 1 6 HELIX 5 AA5 LEU A 141 ALA A 146 1 6 HELIX 6 AA6 LEU A 170 ALA A 176 1 7 HELIX 7 AA7 PRO A 184 GLY A 197 1 14 HELIX 8 AA8 GLU A 242 SER A 252 1 11 HELIX 9 AA9 THR A 262 ASP A 264 5 3 HELIX 10 AB1 ASP A 265 SER A 271 1 7 HELIX 11 AB2 GLN A 294 GLN A 298 5 5 HELIX 12 AB3 SER A 299 ALA A 309 1 11 HELIX 13 AB4 ASN A 311 TRP A 320 1 10 HELIX 14 AB5 PHE A 332 PHE A 339 5 8 HELIX 15 AB6 ASN A 349 SER A 360 1 12 HELIX 16 AB7 ASN A 378 GLN A 392 1 15 HELIX 17 AB8 LYS A 409 SER A 413 5 5 HELIX 18 AB9 ALA A 427 GLY A 436 1 10 HELIX 19 AC1 GLY A 439 ARG A 444 1 6 HELIX 20 AC2 PRO A 450 SER A 461 1 12 HELIX 21 AC3 SER A 466 ALA A 484 1 19 SHEET 1 AA1 7 TYR A 206 VAL A 212 0 SHEET 2 AA1 7 ARG A 216 ALA A 221 -1 O ARG A 216 N VAL A 212 SHEET 3 AA1 7 LYS A 234 LEU A 239 -1 O TYR A 237 N VAL A 217 SHEET 4 AA1 7 ALA A 34 VAL A 39 1 N ILE A 37 O GLN A 238 SHEET 5 AA1 7 ILE A 257 LEU A 261 1 O ILE A 257 N GLY A 38 SHEET 6 AA1 7 PHE A 493 ARG A 499 -1 O VAL A 495 N LEU A 261 SHEET 7 AA1 7 LEU A 275 ILE A 281 -1 N ARG A 278 O TYR A 496 SHEET 1 AA2 2 VAL A 68 ARG A 70 0 SHEET 2 AA2 2 LEU A 84 PRO A 86 -1 O MET A 85 N VAL A 69 SHEET 1 AA3 4 ALA A 89 ASP A 96 0 SHEET 2 AA3 4 SER A 99 LEU A 104 -1 O ARG A 101 N GLU A 93 SHEET 3 AA3 4 THR A 159 ARG A 163 -1 O VAL A 160 N PHE A 102 SHEET 4 AA3 4 VAL A 153 ASP A 156 -1 N VAL A 153 O VAL A 161 SHEET 1 AA4 5 VAL A 397 VAL A 401 0 SHEET 2 AA4 5 ILE A 367 THR A 371 1 N TYR A 369 O LYS A 400 SHEET 3 AA4 5 MET A 415 GLY A 421 1 O MET A 415 N HIS A 370 SHEET 4 AA4 5 ASN A 284 PHE A 290 -1 N THR A 289 O ARG A 416 SHEET 5 AA4 5 ALA A 486 TYR A 490 -1 O TYR A 490 N HIS A 286 CISPEP 1 ALA A 429 THR A 430 0 -1.63 CRYST1 47.010 60.740 151.890 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006584 0.00000