HEADER TRANSPORT PROTEIN 15-FEB-23 8CKE TITLE PBP ACCA FROM A.TUMEFACIENS C58 IN COMPLEX WITH AGROCINOPINE A IN TITLE 2 SPACE GROUP I222 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-521; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 GENE: ACCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PERIPLASMIC BINDING PROTEIN, SOLUTE BINDING PROTEIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX REVDAT 2 07-FEB-24 8CKE 1 JRNL REVDAT 1 24-JAN-24 8CKE 0 JRNL AUTH S.MORERA,A.VIGOUROUX,M.AUMONT-NICAISE,M.AHMAR,T.MEYER, JRNL AUTH 2 A.EL SAHILI,G.DEICSICS,A.GONZALEZ-MULA,S.LI,J.DORE,S.SIRIGU, JRNL AUTH 3 P.LEGRAND,C.PENOT,F.ANDRE,D.FAURE,L.SOULERE,Y.QUENEAU,L.VIAL JRNL TITL A HIGHLY CONSERVED LIGAND-BINDING SITE FOR ACCA TRANSPORTERS JRNL TITL 2 OF ANTIBIOTIC AND QUORUM-SENSING REGULATOR IN AGROBACTERIUM JRNL TITL 3 LEADS TO A DIFFERENT SPECIFICITY. JRNL REF BIOCHEM.J. V. 481 93 2024 JRNL REFN ESSN 1470-8728 JRNL PMID 38058289 JRNL DOI 10.1042/BCJ20230273 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (21-NOV-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.2 REMARK 3 NUMBER OF REFLECTIONS : 78623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 4033 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.84 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1573 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2366 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1476 REMARK 3 BIN R VALUE (WORKING SET) : 0.2342 REMARK 3 BIN FREE R VALUE : 0.2733 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.17 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 457 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30290 REMARK 3 B22 (A**2) : 0.12320 REMARK 3 B33 (A**2) : -0.42620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.150 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.064 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.068 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.072 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.066 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8093 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 14631 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2365 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1232 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8093 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 527 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8121 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 5.66 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.21 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 22.1558 13.2318 144.5850 REMARK 3 T TENSOR REMARK 3 T11: -0.1134 T22: -0.1144 REMARK 3 T33: -0.0974 T12: 0.0078 REMARK 3 T13: 0.0095 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.5177 L22: 0.2734 REMARK 3 L33: 0.4490 L12: 0.2650 REMARK 3 L13: -0.1262 L23: 0.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: -0.0599 S13: -0.0878 REMARK 3 S21: -0.0001 S22: -0.0532 S23: -0.0590 REMARK 3 S31: 0.0257 S32: 0.0357 S33: 0.0644 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE FULLY REFINED REMARK 3 WITH FULL OCCUPANCY AT NUCLEAR POSITION. REMARK 4 REMARK 4 8CKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.298 REMARK 200 RESOLUTION RANGE LOW (A) : 78.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.1 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NH4 ACETATE, CITRATE NA, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.96150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.01650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.37950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.96150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.01650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.37950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.96150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.01650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.37950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.96150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.01650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.37950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 863 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1146 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 A MEMBER OF THE CLASS OF AGROCINOPINES THAT CONSISTS OF SUCROSE AND REMARK 400 L-ARABINOSE UNITS JOINED VIA A PHOSPHODIESTER LINKAGE BETWEEN REMARK 400 POSITION 4F OF SUCROSE AND POSITION 2 OF ARABINOSE. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 189 O HOH A 739 1.59 REMARK 500 O HOH A 946 O HOH A 1046 2.13 REMARK 500 O HOH A 1079 O HOH A 1144 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 174.49 174.48 REMARK 500 ALA A 87 -105.37 -137.20 REMARK 500 LYS A 98 19.51 -140.75 REMARK 500 ASP A 215 -60.77 -136.19 REMARK 500 LYS A 322 -0.50 75.45 REMARK 500 ASN A 374 43.65 -107.35 REMARK 500 TRP A 414 -84.42 -118.30 REMARK 500 LEU A 489 -61.41 -97.77 REMARK 500 SER A 508 46.91 -82.71 REMARK 500 ASN A 517 39.76 -151.68 REMARK 500 LEU A 518 114.28 -160.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 369 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE NUTRIENT REMARK 630 MOLECULE NAME: 2-O-PHOSPHONO-BETA-L-ARABINOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 VDF A 601 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: PHOSPHODIESTER OF SUCROSE AND L-ARABINOSE REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE NUTRIENT REMARK 630 MOLECULE NAME: 2-O-PHOSPHONO-ALPHA-L-ARABINOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 LAO A 604 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: PHOSPHODIESTER OF SUCROSE AND L-ARABINOSE DBREF 8CKE A 31 521 UNP Q52012 Q52012_AGRFC 31 521 SEQRES 1 A 491 GLU ARG ARG ALA LEU ARG LEU GLY VAL ASN GLY LEU PRO SEQRES 2 A 491 ASN SER LEU GLU PRO VAL ASN ALA ILE SER ASN VAL GLY SEQRES 3 A 491 PRO ARG ILE VAL ASN GLN ILE PHE ASP THR LEU ILE ALA SEQRES 4 A 491 ARG ASP PHE PHE ALA LYS GLY ALA PRO GLY ASN ALA ILE SEQRES 5 A 491 ASP LEU VAL PRO ALA LEU ALA GLU SER TRP GLU ARG ILE SEQRES 6 A 491 ASP GLU LYS SER VAL ARG PHE LYS LEU ARG GLN LYS VAL SEQRES 7 A 491 MET PHE HIS ASP GLY VAL GLU LEU THR ALA ASP ASP VAL SEQRES 8 A 491 ALA TYR THR PHE SER SER GLU ARG LEU TRP GLY PRO GLU SEQRES 9 A 491 ALA ILE LYS LYS ILE PRO LEU GLY LYS SER TYR SER LEU SEQRES 10 A 491 ASP PHE ASP GLU PRO VAL VAL GLU ASP LYS TYR THR VAL SEQRES 11 A 491 THR LEU ARG THR LYS THR PRO SER TYR LEU ILE GLU THR SEQRES 12 A 491 PHE VAL ALA SER TRP MET SER ARG ILE VAL PRO LYS GLU SEQRES 13 A 491 TYR TYR LYS LYS LEU GLY ALA VAL ASP PHE GLY ASN LYS SEQRES 14 A 491 PRO VAL GLY THR GLY PRO TYR LYS PHE VAL GLU PHE VAL SEQRES 15 A 491 ALA GLY ASP ARG VAL VAL LEU GLU ALA ASN ASP ALA TYR SEQRES 16 A 491 TRP GLY PRO LYS PRO THR ALA SER LYS ILE THR TYR GLN SEQRES 17 A 491 ILE VAL ALA GLU PRO ALA THR ARG VAL ALA GLY LEU ILE SEQRES 18 A 491 SER GLY GLU TYR ASP ILE ILE THR THR LEU THR PRO ASP SEQRES 19 A 491 ASP ILE GLN LEU ILE ASN SER TYR PRO ASP LEU GLU THR SEQRES 20 A 491 ARG GLY THR LEU ILE GLU ASN PHE HIS MET PHE THR PHE SEQRES 21 A 491 ASN MET ASN GLN GLU VAL PHE LYS ASP LYS LYS LEU ARG SEQRES 22 A 491 ARG ALA LEU ALA LEU ALA VAL ASN ARG PRO ILE MET VAL SEQRES 23 A 491 GLU ALA LEU TRP LYS LYS GLN ALA SER ILE PRO ALA GLY SEQRES 24 A 491 PHE ASN PHE PRO ASN TYR GLY GLU THR PHE ASP PRO LYS SEQRES 25 A 491 ARG LYS ALA MET GLU TYR ASN VAL GLU GLU ALA LYS ARG SEQRES 26 A 491 LEU VAL LYS GLU SER GLY TYR ASP GLY THR PRO ILE THR SEQRES 27 A 491 TYR HIS THR MET GLY ASN TYR TYR ALA ASN ALA MET PRO SEQRES 28 A 491 ALA LEU MET MET MET ILE GLU MET TRP LYS GLN ILE GLY SEQRES 29 A 491 VAL ASN VAL VAL MET LYS THR TYR ALA PRO GLY SER PHE SEQRES 30 A 491 PRO PRO ASP ASN GLN THR TRP MET ARG ASN TRP SER ASN SEQRES 31 A 491 GLY GLN TRP MET THR ASP ALA TYR ALA THR ILE VAL PRO SEQRES 32 A 491 GLU PHE GLY PRO ASN GLY GLN VAL GLN LYS ARG TRP GLY SEQRES 33 A 491 TRP LYS ALA PRO ALA GLU PHE ASN GLU LEU CYS GLN LYS SEQRES 34 A 491 VAL THR VAL LEU PRO ASN GLY LYS GLU ARG PHE ASP ALA SEQRES 35 A 491 TYR ASN ARG MET ARG ASP ILE PHE GLU GLU GLU ALA PRO SEQRES 36 A 491 ALA VAL ILE LEU TYR GLN PRO TYR ASP VAL TYR ALA ALA SEQRES 37 A 491 ARG LYS ASP VAL HIS TRP LYS PRO VAL SER PHE GLU MET SEQRES 38 A 491 MET GLU PHE ARG ASN ASN LEU SER PHE GLY HET GLC B 1 22 HET FRU B 2 19 HET GLC C 1 22 HET FRU C 2 20 HET VDF A 601 22 HET EDO A 602 10 HET ACT A 603 7 HET LAO A 604 21 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM VDF 2-O-PHOSPHONO-BETA-L-ARABINOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM LAO 2-O-PHOSPHONO-ALPHA-L-ARABINOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN VDF 2-O-PHOSPHONO-BETA-L-ARABINOSE; 2-O-PHOSPHONO-L- HETSYN 2 VDF ARABINOSE; 2-O-PHOSPHONO-ARABINOSE; [(2S,3R,4S,5S)-2, HETSYN 3 VDF 4,5-TRIS(OXIDANYL)OXAN-3-YL] DIHYDROGEN PHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN LAO 2-O-PHOSPHONO-ALPHA-L-ARABINOSE; 2-O-PHOSPHONO-L- HETSYN 2 LAO ARABINOSE; 2-O-PHOSPHONO-ARABINOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 FRU 2(C6 H12 O6) FORMUL 4 VDF C5 H11 O8 P FORMUL 5 EDO C2 H6 O2 FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 LAO C5 H11 O8 P FORMUL 8 HOH *457(H2 O) HELIX 1 AA1 GLY A 56 PHE A 64 1 9 HELIX 2 AA2 PHE A 73 ALA A 77 5 5 HELIX 3 AA3 THR A 117 PHE A 125 1 9 HELIX 4 AA4 GLY A 132 LYS A 138 5 7 HELIX 5 AA5 LEU A 141 SER A 146 1 6 HELIX 6 AA6 LEU A 170 ALA A 176 1 7 HELIX 7 AA7 PRO A 184 LYS A 199 1 16 HELIX 8 AA8 GLU A 242 SER A 252 1 11 HELIX 9 AA9 THR A 262 ASP A 264 5 3 HELIX 10 AB1 ASP A 265 TYR A 272 1 8 HELIX 11 AB2 GLN A 294 LYS A 298 5 5 HELIX 12 AB3 ASP A 299 ALA A 309 1 11 HELIX 13 AB4 ASN A 311 LYS A 321 1 11 HELIX 14 AB5 PHE A 332 PHE A 339 5 8 HELIX 15 AB6 ASN A 349 SER A 360 1 12 HELIX 16 AB7 ASN A 378 GLN A 392 1 15 HELIX 17 AB8 PRO A 409 THR A 413 5 5 HELIX 18 AB9 ALA A 427 GLY A 436 1 10 HELIX 19 AC1 GLY A 439 ARG A 444 1 6 HELIX 20 AC2 PRO A 450 LEU A 463 1 14 HELIX 21 AC3 GLY A 466 ALA A 484 1 19 SHEET 1 AA1 7 TYR A 206 VAL A 212 0 SHEET 2 AA1 7 ARG A 216 ALA A 221 -1 O GLU A 220 N LYS A 207 SHEET 3 AA1 7 LYS A 234 ILE A 239 -1 O TYR A 237 N VAL A 217 SHEET 4 AA1 7 ALA A 34 VAL A 39 1 N LEU A 37 O THR A 236 SHEET 5 AA1 7 ILE A 257 LEU A 261 1 O ILE A 257 N GLY A 38 SHEET 6 AA1 7 TYR A 493 ARG A 499 -1 O VAL A 495 N LEU A 261 SHEET 7 AA1 7 LEU A 275 LEU A 281 -1 N GLU A 276 O ALA A 498 SHEET 1 AA2 2 ILE A 68 ARG A 70 0 SHEET 2 AA2 2 LEU A 84 PRO A 86 -1 O VAL A 85 N ALA A 69 SHEET 1 AA3 4 ALA A 89 ASP A 96 0 SHEET 2 AA3 4 SER A 99 LEU A 104 -1 O ARG A 101 N GLU A 93 SHEET 3 AA3 4 THR A 159 THR A 164 -1 O VAL A 160 N PHE A 102 SHEET 4 AA3 4 PHE A 149 ASP A 156 -1 N VAL A 153 O THR A 161 SHEET 1 AA4 5 VAL A 397 THR A 401 0 SHEET 2 AA4 5 ILE A 367 THR A 371 1 N TYR A 369 O LYS A 400 SHEET 3 AA4 5 MET A 415 GLY A 421 1 O MET A 415 N HIS A 370 SHEET 4 AA4 5 ASN A 284 PHE A 290 -1 N THR A 289 O ARG A 416 SHEET 5 AA4 5 ALA A 486 TYR A 490 -1 O VAL A 487 N PHE A 288 SHEET 1 AA5 2 VAL A 502 HIS A 503 0 SHEET 2 AA5 2 SER A 519 PHE A 520 -1 O SER A 519 N HIS A 503 LINK OP3BVDF A 601 C4 BFRU B 2 1555 1555 1.44 LINK P ALAO A 604 O4 AFRU C 2 1555 1555 1.61 LINK C1 BGLC B 1 O2 BFRU B 2 1555 1555 1.46 LINK C1 AGLC C 1 O2 AFRU C 2 1555 1555 1.46 CISPEP 1 ALA A 429 THR A 430 0 -3.98 CRYST1 77.923 108.033 112.759 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008868 0.00000