data_8CKL # _entry.id 8CKL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8CKL pdb_00008ckl 10.2210/pdb8ckl/pdb WWPDB D_1292128198 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-02-28 2 'Structure model' 1 1 2024-09-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_struct_ncs_dom_lim.beg_auth_asym_id' 13 2 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 14 2 'Structure model' '_struct_ncs_dom_lim.beg_auth_seq_id' 15 2 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 16 2 'Structure model' '_struct_ncs_dom_lim.end_auth_asym_id' 17 2 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 18 2 'Structure model' '_struct_ncs_dom_lim.end_auth_seq_id' 19 2 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8CKL _pdbx_database_status.recvd_initial_deposition_date 2023-02-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '8CKG contains the same protein complexed with sulfate' 8CKG unspecified PDB '8CKK contains the same protein complexed with nitrate' 8CKK unspecified PDB '8CKM contains the same protein in apo state' 8CKM unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email yvonne.jones@strubi.ox.ac.uk _pdbx_contact_author.name_first E.Yvonne _pdbx_contact_author.name_last Jones _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3834-1893 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nagy, G.N.' 1 0000-0003-1761-5610 'Duman, R.' 2 ? 'Harlos, K.' 3 ? 'El Omari, K.' 4 ? 'Wagner, A.' 5 ? 'Jones, E.Y.' 6 0000-0002-3834-1893 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 2723 _citation.page_last 2723 _citation.title 'Structure and function of Semaphorin-5A glycosaminoglycan interactions.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-024-46725-7 _citation.pdbx_database_id_PubMed 38548715 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagy, G.N.' 1 0000-0003-1761-5610 primary 'Zhao, X.F.' 2 0000-0002-7574-7163 primary 'Karlsson, R.' 3 0000-0003-0448-6135 primary 'Wang, K.' 4 ? primary 'Duman, R.' 5 ? primary 'Harlos, K.' 6 ? primary 'El Omari, K.' 7 0000-0003-3506-6045 primary 'Wagner, A.' 8 0000-0001-8995-7324 primary 'Clausen, H.' 9 0000-0002-0915-5055 primary 'Miller, R.L.' 10 0000-0001-8574-1948 primary 'Giger, R.J.' 11 0000-0002-2926-3336 primary 'Jones, E.Y.' 12 0000-0002-3834-1893 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Semaphorin-5A 14054.702 2 ? ? ? ;N-terminal 'ET' peptide and C-terminal 'GTLEVLFQ' peptides are recombinant additions encoded by the expression vector ; 2 branched man '2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose-(1-2)-1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose' 982.803 1 ? ? ? ? 3 non-polymer syn alpha-D-mannopyranose 180.156 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Semaphorin-F,Sema F' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ETGPHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQR FRYTCKARLADPNLLEVGRQRIEMRYCSSDGTSGCSTGTLEVLFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;ETGPHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQR FRYTCKARLADPNLLEVGRQRIEMRYCSSDGTSGCSTGTLEVLFQ ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name alpha-D-mannopyranose _pdbx_entity_nonpoly.comp_id MAN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 GLY n 1 4 PRO n 1 5 HIS n 1 6 MET n 1 7 PHE n 1 8 TRP n 1 9 THR n 1 10 GLY n 1 11 TRP n 1 12 GLY n 1 13 PRO n 1 14 TRP n 1 15 GLU n 1 16 ARG n 1 17 CYS n 1 18 THR n 1 19 ALA n 1 20 GLN n 1 21 CYS n 1 22 GLY n 1 23 GLY n 1 24 GLY n 1 25 ILE n 1 26 GLN n 1 27 ALA n 1 28 ARG n 1 29 ARG n 1 30 ARG n 1 31 ILE n 1 32 CYS n 1 33 GLU n 1 34 ASN n 1 35 GLY n 1 36 PRO n 1 37 ASP n 1 38 CYS n 1 39 ALA n 1 40 GLY n 1 41 CYS n 1 42 ASN n 1 43 VAL n 1 44 GLU n 1 45 TYR n 1 46 GLN n 1 47 SER n 1 48 CYS n 1 49 ASN n 1 50 THR n 1 51 ASN n 1 52 PRO n 1 53 CYS n 1 54 PRO n 1 55 GLU n 1 56 LEU n 1 57 LYS n 1 58 LYS n 1 59 THR n 1 60 THR n 1 61 PRO n 1 62 TRP n 1 63 THR n 1 64 PRO n 1 65 TRP n 1 66 THR n 1 67 PRO n 1 68 VAL n 1 69 ASN n 1 70 ILE n 1 71 SER n 1 72 ASP n 1 73 ASN n 1 74 GLY n 1 75 GLY n 1 76 HIS n 1 77 TYR n 1 78 GLU n 1 79 GLN n 1 80 ARG n 1 81 PHE n 1 82 ARG n 1 83 TYR n 1 84 THR n 1 85 CYS n 1 86 LYS n 1 87 ALA n 1 88 ARG n 1 89 LEU n 1 90 ALA n 1 91 ASP n 1 92 PRO n 1 93 ASN n 1 94 LEU n 1 95 LEU n 1 96 GLU n 1 97 VAL n 1 98 GLY n 1 99 ARG n 1 100 GLN n 1 101 ARG n 1 102 ILE n 1 103 GLU n 1 104 MET n 1 105 ARG n 1 106 TYR n 1 107 CYS n 1 108 SER n 1 109 SER n 1 110 ASP n 1 111 GLY n 1 112 THR n 1 113 SER n 1 114 GLY n 1 115 CYS n 1 116 SER n 1 117 THR n 1 118 GLY n 1 119 THR n 1 120 LEU n 1 121 GLU n 1 122 VAL n 1 123 LEU n 1 124 PHE n 1 125 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 125 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SEMA5A, SEMAF' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293T _entity_src_gen.pdbx_host_org_atcc CRL-3216 _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHL-sec _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 ;WURCS=2.0/2,2,1/[ha122h-2b_2-5_1*OSO/3=O/3=O_3*OSO/3=O/3=O_4*OSO/3=O/3=O_6*OSO/3=O/3=O][a2122h-1a_1-5_2*OSO/3=O/3=O_3*OSO/3=O/3=O_4*OSO/3=O/3=O_6*OSO/3=O/3=O]/1-2/a2-b1 ; WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-Fruf1SO33SO34SO36SO3]{[(2+1)][a-D-Glcp2SO33SO34SO36SO3]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GU4 _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 YYJ _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GU4 'D-saccharide, alpha linking' n 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose '2,3,4,6-tetra-O-sulfonato-alpha-D-glucose; 2,3,4,6-tetra-O-sulfonato-D-glucose; 2,3,4,6-tetra-O-sulfonato-glucose' 'C6 H12 O18 S4' 500.409 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YYJ 'D-saccharide, beta linking' n 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose ? 'C6 H12 O18 S4' 500.409 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GU4 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcp[2S,3S,4S,6S]a' GU4 'COMMON NAME' GMML 1.0 2-sulfo-3-sulfo-4-sulfo-6-sulfo-a-D-glucopyranose GU4 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp2SO33SO34SO36SO3 MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 649 ? ? ? A . n A 1 2 THR 2 650 ? ? ? A . n A 1 3 GLY 3 651 ? ? ? A . n A 1 4 PRO 4 652 ? ? ? A . n A 1 5 HIS 5 653 ? ? ? A . n A 1 6 MET 6 654 654 MET MET A . n A 1 7 PHE 7 655 655 PHE PHE A . n A 1 8 TRP 8 656 656 TRP TRP A . n A 1 9 THR 9 657 657 THR THR A . n A 1 10 GLY 10 658 658 GLY GLY A . n A 1 11 TRP 11 659 659 TRP TRP A . n A 1 12 GLY 12 660 660 GLY GLY A . n A 1 13 PRO 13 661 661 PRO PRO A . n A 1 14 TRP 14 662 662 TRP TRP A . n A 1 15 GLU 15 663 663 GLU GLU A . n A 1 16 ARG 16 664 664 ARG ARG A . n A 1 17 CYS 17 665 665 CYS CYS A . n A 1 18 THR 18 666 666 THR THR A . n A 1 19 ALA 19 667 667 ALA ALA A . n A 1 20 GLN 20 668 668 GLN GLN A . n A 1 21 CYS 21 669 669 CYS CYS A . n A 1 22 GLY 22 670 670 GLY GLY A . n A 1 23 GLY 23 671 671 GLY GLY A . n A 1 24 GLY 24 672 672 GLY GLY A . n A 1 25 ILE 25 673 673 ILE ILE A . n A 1 26 GLN 26 674 674 GLN GLN A . n A 1 27 ALA 27 675 675 ALA ALA A . n A 1 28 ARG 28 676 676 ARG ARG A . n A 1 29 ARG 29 677 677 ARG ARG A . n A 1 30 ARG 30 678 678 ARG ARG A . n A 1 31 ILE 31 679 679 ILE ILE A . n A 1 32 CYS 32 680 680 CYS CYS A . n A 1 33 GLU 33 681 681 GLU GLU A . n A 1 34 ASN 34 682 682 ASN ASN A . n A 1 35 GLY 35 683 683 GLY GLY A . n A 1 36 PRO 36 684 684 PRO PRO A . n A 1 37 ASP 37 685 685 ASP ASP A . n A 1 38 CYS 38 686 686 CYS CYS A . n A 1 39 ALA 39 687 687 ALA ALA A . n A 1 40 GLY 40 688 688 GLY GLY A . n A 1 41 CYS 41 689 689 CYS CYS A . n A 1 42 ASN 42 690 690 ASN ASN A . n A 1 43 VAL 43 691 691 VAL VAL A . n A 1 44 GLU 44 692 692 GLU GLU A . n A 1 45 TYR 45 693 693 TYR TYR A . n A 1 46 GLN 46 694 694 GLN GLN A . n A 1 47 SER 47 695 695 SER SER A . n A 1 48 CYS 48 696 696 CYS CYS A . n A 1 49 ASN 49 697 697 ASN ASN A . n A 1 50 THR 50 698 698 THR THR A . n A 1 51 ASN 51 699 699 ASN ASN A . n A 1 52 PRO 52 700 700 PRO PRO A . n A 1 53 CYS 53 701 701 CYS CYS A . n A 1 54 PRO 54 702 702 PRO PRO A . n A 1 55 GLU 55 703 703 GLU GLU A . n A 1 56 LEU 56 704 704 LEU LEU A . n A 1 57 LYS 57 705 705 LYS LYS A . n A 1 58 LYS 58 706 706 LYS LYS A . n A 1 59 THR 59 707 707 THR THR A . n A 1 60 THR 60 708 708 THR THR A . n A 1 61 PRO 61 709 709 PRO PRO A . n A 1 62 TRP 62 710 710 TRP TRP A . n A 1 63 THR 63 711 711 THR THR A . n A 1 64 PRO 64 712 712 PRO PRO A . n A 1 65 TRP 65 713 713 TRP TRP A . n A 1 66 THR 66 714 714 THR THR A . n A 1 67 PRO 67 715 715 PRO PRO A . n A 1 68 VAL 68 716 716 VAL VAL A . n A 1 69 ASN 69 717 ? ? ? A . n A 1 70 ILE 70 718 ? ? ? A . n A 1 71 SER 71 719 ? ? ? A . n A 1 72 ASP 72 720 ? ? ? A . n A 1 73 ASN 73 721 ? ? ? A . n A 1 74 GLY 74 722 ? ? ? A . n A 1 75 GLY 75 723 ? ? ? A . n A 1 76 HIS 76 724 724 HIS HIS A . n A 1 77 TYR 77 725 725 TYR TYR A . n A 1 78 GLU 78 726 726 GLU GLU A . n A 1 79 GLN 79 727 727 GLN GLN A . n A 1 80 ARG 80 728 728 ARG ARG A . n A 1 81 PHE 81 729 729 PHE PHE A . n A 1 82 ARG 82 730 730 ARG ARG A . n A 1 83 TYR 83 731 731 TYR TYR A . n A 1 84 THR 84 732 732 THR THR A . n A 1 85 CYS 85 733 733 CYS CYS A . n A 1 86 LYS 86 734 734 LYS LYS A . n A 1 87 ALA 87 735 735 ALA ALA A . n A 1 88 ARG 88 736 736 ARG ARG A . n A 1 89 LEU 89 737 737 LEU LEU A . n A 1 90 ALA 90 738 738 ALA ALA A . n A 1 91 ASP 91 739 739 ASP ASP A . n A 1 92 PRO 92 740 740 PRO PRO A . n A 1 93 ASN 93 741 741 ASN ASN A . n A 1 94 LEU 94 742 742 LEU LEU A . n A 1 95 LEU 95 743 743 LEU LEU A . n A 1 96 GLU 96 744 744 GLU GLU A . n A 1 97 VAL 97 745 745 VAL VAL A . n A 1 98 GLY 98 746 746 GLY GLY A . n A 1 99 ARG 99 747 747 ARG ARG A . n A 1 100 GLN 100 748 748 GLN GLN A . n A 1 101 ARG 101 749 749 ARG ARG A . n A 1 102 ILE 102 750 750 ILE ILE A . n A 1 103 GLU 103 751 751 GLU GLU A . n A 1 104 MET 104 752 752 MET MET A . n A 1 105 ARG 105 753 753 ARG ARG A . n A 1 106 TYR 106 754 754 TYR TYR A . n A 1 107 CYS 107 755 755 CYS CYS A . n A 1 108 SER 108 756 756 SER SER A . n A 1 109 SER 109 757 ? ? ? A . n A 1 110 ASP 110 758 ? ? ? A . n A 1 111 GLY 111 759 ? ? ? A . n A 1 112 THR 112 760 ? ? ? A . n A 1 113 SER 113 761 ? ? ? A . n A 1 114 GLY 114 762 ? ? ? A . n A 1 115 CYS 115 763 ? ? ? A . n A 1 116 SER 116 764 ? ? ? A . n A 1 117 THR 117 765 ? ? ? A . n A 1 118 GLY 118 766 ? ? ? A . n A 1 119 THR 119 767 ? ? ? A . n A 1 120 LEU 120 768 ? ? ? A . n A 1 121 GLU 121 769 ? ? ? A . n A 1 122 VAL 122 770 ? ? ? A . n A 1 123 LEU 123 771 ? ? ? A . n A 1 124 PHE 124 772 ? ? ? A . n A 1 125 GLN 125 773 ? ? ? A . n B 1 1 GLU 1 649 ? ? ? B . n B 1 2 THR 2 650 ? ? ? B . n B 1 3 GLY 3 651 ? ? ? B . n B 1 4 PRO 4 652 ? ? ? B . n B 1 5 HIS 5 653 ? ? ? B . n B 1 6 MET 6 654 654 MET MET B . n B 1 7 PHE 7 655 655 PHE PHE B . n B 1 8 TRP 8 656 656 TRP TRP B . n B 1 9 THR 9 657 657 THR THR B . n B 1 10 GLY 10 658 658 GLY GLY B . n B 1 11 TRP 11 659 659 TRP TRP B . n B 1 12 GLY 12 660 660 GLY GLY B . n B 1 13 PRO 13 661 661 PRO PRO B . n B 1 14 TRP 14 662 662 TRP TRP B . n B 1 15 GLU 15 663 663 GLU GLU B . n B 1 16 ARG 16 664 664 ARG ARG B . n B 1 17 CYS 17 665 665 CYS CYS B . n B 1 18 THR 18 666 666 THR THR B . n B 1 19 ALA 19 667 667 ALA ALA B . n B 1 20 GLN 20 668 668 GLN GLN B . n B 1 21 CYS 21 669 669 CYS CYS B . n B 1 22 GLY 22 670 670 GLY GLY B . n B 1 23 GLY 23 671 671 GLY GLY B . n B 1 24 GLY 24 672 672 GLY GLY B . n B 1 25 ILE 25 673 673 ILE ILE B . n B 1 26 GLN 26 674 674 GLN GLN B . n B 1 27 ALA 27 675 675 ALA ALA B . n B 1 28 ARG 28 676 676 ARG ARG B . n B 1 29 ARG 29 677 677 ARG ARG B . n B 1 30 ARG 30 678 678 ARG ARG B . n B 1 31 ILE 31 679 679 ILE ILE B . n B 1 32 CYS 32 680 680 CYS CYS B . n B 1 33 GLU 33 681 681 GLU GLU B . n B 1 34 ASN 34 682 682 ASN ASN B . n B 1 35 GLY 35 683 683 GLY GLY B . n B 1 36 PRO 36 684 684 PRO PRO B . n B 1 37 ASP 37 685 685 ASP ASP B . n B 1 38 CYS 38 686 686 CYS CYS B . n B 1 39 ALA 39 687 687 ALA ALA B . n B 1 40 GLY 40 688 688 GLY GLY B . n B 1 41 CYS 41 689 689 CYS CYS B . n B 1 42 ASN 42 690 690 ASN ASN B . n B 1 43 VAL 43 691 691 VAL VAL B . n B 1 44 GLU 44 692 692 GLU GLU B . n B 1 45 TYR 45 693 693 TYR TYR B . n B 1 46 GLN 46 694 694 GLN GLN B . n B 1 47 SER 47 695 695 SER SER B . n B 1 48 CYS 48 696 696 CYS CYS B . n B 1 49 ASN 49 697 697 ASN ASN B . n B 1 50 THR 50 698 698 THR THR B . n B 1 51 ASN 51 699 699 ASN ASN B . n B 1 52 PRO 52 700 700 PRO PRO B . n B 1 53 CYS 53 701 701 CYS CYS B . n B 1 54 PRO 54 702 702 PRO PRO B . n B 1 55 GLU 55 703 703 GLU GLU B . n B 1 56 LEU 56 704 704 LEU LEU B . n B 1 57 LYS 57 705 705 LYS LYS B . n B 1 58 LYS 58 706 706 LYS LYS B . n B 1 59 THR 59 707 707 THR THR B . n B 1 60 THR 60 708 708 THR THR B . n B 1 61 PRO 61 709 709 PRO PRO B . n B 1 62 TRP 62 710 710 TRP TRP B . n B 1 63 THR 63 711 711 THR THR B . n B 1 64 PRO 64 712 712 PRO PRO B . n B 1 65 TRP 65 713 713 TRP TRP B . n B 1 66 THR 66 714 714 THR THR B . n B 1 67 PRO 67 715 715 PRO PRO B . n B 1 68 VAL 68 716 716 VAL VAL B . n B 1 69 ASN 69 717 ? ? ? B . n B 1 70 ILE 70 718 ? ? ? B . n B 1 71 SER 71 719 ? ? ? B . n B 1 72 ASP 72 720 ? ? ? B . n B 1 73 ASN 73 721 ? ? ? B . n B 1 74 GLY 74 722 ? ? ? B . n B 1 75 GLY 75 723 ? ? ? B . n B 1 76 HIS 76 724 724 HIS HIS B . n B 1 77 TYR 77 725 725 TYR TYR B . n B 1 78 GLU 78 726 726 GLU GLU B . n B 1 79 GLN 79 727 727 GLN GLN B . n B 1 80 ARG 80 728 728 ARG ARG B . n B 1 81 PHE 81 729 729 PHE PHE B . n B 1 82 ARG 82 730 730 ARG ARG B . n B 1 83 TYR 83 731 731 TYR TYR B . n B 1 84 THR 84 732 732 THR THR B . n B 1 85 CYS 85 733 733 CYS CYS B . n B 1 86 LYS 86 734 734 LYS LYS B . n B 1 87 ALA 87 735 735 ALA ALA B . n B 1 88 ARG 88 736 736 ARG ARG B . n B 1 89 LEU 89 737 737 LEU LEU B . n B 1 90 ALA 90 738 738 ALA ALA B . n B 1 91 ASP 91 739 739 ASP ASP B . n B 1 92 PRO 92 740 740 PRO PRO B . n B 1 93 ASN 93 741 741 ASN ASN B . n B 1 94 LEU 94 742 742 LEU LEU B . n B 1 95 LEU 95 743 743 LEU LEU B . n B 1 96 GLU 96 744 744 GLU GLU B . n B 1 97 VAL 97 745 745 VAL VAL B . n B 1 98 GLY 98 746 746 GLY GLY B . n B 1 99 ARG 99 747 747 ARG ARG B . n B 1 100 GLN 100 748 748 GLN GLN B . n B 1 101 ARG 101 749 749 ARG ARG B . n B 1 102 ILE 102 750 750 ILE ILE B . n B 1 103 GLU 103 751 751 GLU GLU B . n B 1 104 MET 104 752 752 MET MET B . n B 1 105 ARG 105 753 753 ARG ARG B . n B 1 106 TYR 106 754 754 TYR TYR B . n B 1 107 CYS 107 755 755 CYS CYS B . n B 1 108 SER 108 756 ? ? ? B . n B 1 109 SER 109 757 ? ? ? B . n B 1 110 ASP 110 758 ? ? ? B . n B 1 111 GLY 111 759 ? ? ? B . n B 1 112 THR 112 760 ? ? ? B . n B 1 113 SER 113 761 ? ? ? B . n B 1 114 GLY 114 762 ? ? ? B . n B 1 115 CYS 115 763 ? ? ? B . n B 1 116 SER 116 764 ? ? ? B . n B 1 117 THR 117 765 ? ? ? B . n B 1 118 GLY 118 766 ? ? ? B . n B 1 119 THR 119 767 ? ? ? B . n B 1 120 LEU 120 768 768 LEU LEU B . n B 1 121 GLU 121 769 769 GLU GLU B . n B 1 122 VAL 122 770 770 VAL VAL B . n B 1 123 LEU 123 771 771 LEU LEU B . n B 1 124 PHE 124 772 772 PHE PHE B . n B 1 125 GLN 125 773 773 GLN GLN B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 YYJ 1 H YYJ 2 H YYJ 1 n C 2 GU4 2 H GU4 1 H GU4 2 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 GU4 ? ? GU4 ? ? 'SUBJECT OF INVESTIGATION' ? 2 MAN ? ? MAN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MAN 1 801 1 MAN MAN A . E 3 MAN 1 802 1 MAN MAN A . F 3 MAN 1 801 1 MAN MAN B . G 3 MAN 1 802 1 MAN MAN B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 664 ? CG ? A ARG 16 CG 2 1 Y 1 A ARG 664 ? CD ? A ARG 16 CD 3 1 Y 1 A ARG 664 ? NE ? A ARG 16 NE 4 1 Y 1 A ARG 664 ? CZ ? A ARG 16 CZ 5 1 Y 1 A ARG 664 ? NH1 ? A ARG 16 NH1 6 1 Y 1 A ARG 664 ? NH2 ? A ARG 16 NH2 7 1 Y 1 A GLN 668 ? CG ? A GLN 20 CG 8 1 Y 1 A GLN 668 ? CD ? A GLN 20 CD 9 1 Y 1 A GLN 668 ? OE1 ? A GLN 20 OE1 10 1 Y 1 A GLN 668 ? NE2 ? A GLN 20 NE2 11 1 Y 1 A ARG 676 ? CG ? A ARG 28 CG 12 1 Y 1 A ARG 676 ? CD ? A ARG 28 CD 13 1 Y 1 A ARG 676 ? NE ? A ARG 28 NE 14 1 Y 1 A ARG 676 ? CZ ? A ARG 28 CZ 15 1 Y 1 A ARG 676 ? NH1 ? A ARG 28 NH1 16 1 Y 1 A ARG 676 ? NH2 ? A ARG 28 NH2 17 1 Y 1 A ARG 677 ? CG ? A ARG 29 CG 18 1 Y 1 A ARG 677 ? CD ? A ARG 29 CD 19 1 Y 1 A ARG 677 ? NE ? A ARG 29 NE 20 1 Y 1 A ARG 677 ? CZ ? A ARG 29 CZ 21 1 Y 1 A ARG 677 ? NH1 ? A ARG 29 NH1 22 1 Y 1 A ARG 677 ? NH2 ? A ARG 29 NH2 23 1 Y 1 A ILE 679 ? CG1 ? A ILE 31 CG1 24 1 Y 1 A ILE 679 ? CG2 ? A ILE 31 CG2 25 1 Y 1 A ILE 679 ? CD1 ? A ILE 31 CD1 26 1 Y 1 A GLU 681 ? CG ? A GLU 33 CG 27 1 Y 1 A GLU 681 ? CD ? A GLU 33 CD 28 1 Y 1 A GLU 681 ? OE1 ? A GLU 33 OE1 29 1 Y 1 A GLU 681 ? OE2 ? A GLU 33 OE2 30 1 Y 1 A ASN 682 ? CG ? A ASN 34 CG 31 1 Y 1 A ASN 682 ? OD1 ? A ASN 34 OD1 32 1 Y 1 A ASN 682 ? ND2 ? A ASN 34 ND2 33 1 Y 1 A GLU 744 ? CG ? A GLU 96 CG 34 1 Y 1 A GLU 744 ? CD ? A GLU 96 CD 35 1 Y 1 A GLU 744 ? OE1 ? A GLU 96 OE1 36 1 Y 1 A GLU 744 ? OE2 ? A GLU 96 OE2 37 1 Y 1 A ARG 747 ? CG ? A ARG 99 CG 38 1 Y 1 A ARG 747 ? CD ? A ARG 99 CD 39 1 Y 1 A ARG 747 ? NE ? A ARG 99 NE 40 1 Y 1 A ARG 747 ? CZ ? A ARG 99 CZ 41 1 Y 1 A ARG 747 ? NH1 ? A ARG 99 NH1 42 1 Y 1 A ARG 747 ? NH2 ? A ARG 99 NH2 43 1 Y 1 B MET 654 ? CG ? B MET 6 CG 44 1 Y 1 B MET 654 ? SD ? B MET 6 SD 45 1 Y 1 B MET 654 ? CE ? B MET 6 CE 46 1 Y 1 B ARG 664 ? CG ? B ARG 16 CG 47 1 Y 1 B ARG 664 ? CD ? B ARG 16 CD 48 1 Y 1 B ARG 664 ? NE ? B ARG 16 NE 49 1 Y 1 B ARG 664 ? CZ ? B ARG 16 CZ 50 1 Y 1 B ARG 664 ? NH1 ? B ARG 16 NH1 51 1 Y 1 B ARG 664 ? NH2 ? B ARG 16 NH2 52 1 Y 1 B GLN 668 ? CG ? B GLN 20 CG 53 1 Y 1 B GLN 668 ? CD ? B GLN 20 CD 54 1 Y 1 B GLN 668 ? OE1 ? B GLN 20 OE1 55 1 Y 1 B GLN 668 ? NE2 ? B GLN 20 NE2 56 1 Y 1 B ARG 677 ? CG ? B ARG 29 CG 57 1 Y 1 B ARG 677 ? CD ? B ARG 29 CD 58 1 Y 1 B ARG 677 ? NE ? B ARG 29 NE 59 1 Y 1 B ARG 677 ? CZ ? B ARG 29 CZ 60 1 Y 1 B ARG 677 ? NH1 ? B ARG 29 NH1 61 1 Y 1 B ARG 677 ? NH2 ? B ARG 29 NH2 62 1 Y 1 B ASP 685 ? CG ? B ASP 37 CG 63 1 Y 1 B ASP 685 ? OD1 ? B ASP 37 OD1 64 1 Y 1 B ASP 685 ? OD2 ? B ASP 37 OD2 65 1 Y 1 B GLU 703 ? CG ? B GLU 55 CG 66 1 Y 1 B GLU 703 ? CD ? B GLU 55 CD 67 1 Y 1 B GLU 703 ? OE1 ? B GLU 55 OE1 68 1 Y 1 B GLU 703 ? OE2 ? B GLU 55 OE2 69 1 Y 1 B ARG 736 ? CG ? B ARG 88 CG 70 1 Y 1 B ARG 736 ? CD ? B ARG 88 CD 71 1 Y 1 B ARG 736 ? NE ? B ARG 88 NE 72 1 Y 1 B ARG 736 ? CZ ? B ARG 88 CZ 73 1 Y 1 B ARG 736 ? NH1 ? B ARG 88 NH1 74 1 Y 1 B ARG 736 ? NH2 ? B ARG 88 NH2 75 1 Y 1 B GLU 744 ? CG ? B GLU 96 CG 76 1 Y 1 B GLU 744 ? CD ? B GLU 96 CD 77 1 Y 1 B GLU 744 ? OE1 ? B GLU 96 OE1 78 1 Y 1 B GLU 744 ? OE2 ? B GLU 96 OE2 79 1 Y 1 B TYR 754 ? CG ? B TYR 106 CG 80 1 Y 1 B TYR 754 ? CD1 ? B TYR 106 CD1 81 1 Y 1 B TYR 754 ? CD2 ? B TYR 106 CD2 82 1 Y 1 B TYR 754 ? CE1 ? B TYR 106 CE1 83 1 Y 1 B TYR 754 ? CE2 ? B TYR 106 CE2 84 1 Y 1 B TYR 754 ? CZ ? B TYR 106 CZ 85 1 Y 1 B TYR 754 ? OH ? B TYR 106 OH 86 1 Y 1 B GLU 769 ? CG ? B GLU 121 CG 87 1 Y 1 B GLU 769 ? CD ? B GLU 121 CD 88 1 Y 1 B GLU 769 ? OE1 ? B GLU 121 OE1 89 1 Y 1 B GLU 769 ? OE2 ? B GLU 121 OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? 1.0.5 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.9.6 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'BUILT 20200417' 5 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 6 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 99.970 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8CKL _cell.details ? _cell.formula_units_Z ? _cell.length_a 106.106 _cell.length_a_esd ? _cell.length_b 30.770 _cell.length_b_esd ? _cell.length_c 84.172 _cell.length_c_esd ? _cell.volume 270661.559 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8CKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8CKL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '8 % PEG 8000, 0.1 M sodium citrate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-10-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator M _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97625 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97625 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 73.54 _reflns.entry_id 8CKL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.56 _reflns.d_resolution_low 82.900 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5008 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 55.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.156 _reflns.pdbx_Rpim_I_all 0.061 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.143 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.561 _reflns_shell.d_res_low 2.841 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 250 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.6 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.889 _reflns_shell.pdbx_Rpim_I_all 1.091 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.098 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 10.7 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.670 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 82.26 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8CKL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.56 _refine.ls_d_res_low 82.90 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4996 _refine.ls_number_reflns_R_free 239 _refine.ls_number_reflns_R_work 4757 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 55.77 _refine.ls_percent_reflns_R_free 4.78 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2566 _refine.ls_R_factor_R_free 0.2850 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2554 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.0547 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4093 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.56 _refine_hist.d_res_low 82.90 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1614 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1515 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 99 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0018 ? 1659 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.5615 ? 2276 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0387 ? 243 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0047 ? 276 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 11.3601 ? 595 ? f_dihedral_angle_d ? ? # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.ncs_model_details ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.rms_dev_position 2.02253170192 _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id ? _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.pdbx_ens_id ens_1 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.56 3.23 . . 58 1066 25.52 . . . . 0.3658 . . . . . . . . . . . 0.4658 'X-RAY DIFFRACTION' 3.23 82.90 . . 181 3691 85.06 . . . . 0.2464 . . . . . . . . . . . 0.2663 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] -0.966373104628 _struct_ncs_oper.matrix[1][2] -0.205420685331 _struct_ncs_oper.matrix[1][3] -0.15467826185 _struct_ncs_oper.matrix[2][1] -0.165334894852 _struct_ncs_oper.matrix[2][2] 0.0356607335705 _struct_ncs_oper.matrix[2][3] 0.985592555078 _struct_ncs_oper.matrix[3][1] -0.196945157836 _struct_ncs_oper.matrix[3][2] 0.978023851508 _struct_ncs_oper.matrix[3][3] -0.0684247812234 _struct_ncs_oper.vector[1] 19.388412939 _struct_ncs_oper.vector[2] -26.3025178258 _struct_ncs_oper.vector[3] 30.7603935732 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and ((resid 654 and (name N or name CA or name C or name O or name CB )) or resid 655 through 684 or (resid 685 and (name N or name CA or name C or name O or name CB )) or resid 686 through 702 or (resid 703 and (name N or name CA or name C or name O or name CB )) or resid 704 through 735 or (resid 736 and (name N or name CA or name C or name O or name CB )) or resid 737 through 753 or (resid 754 and (name N or name CA or name C or name O or name CB )) or resid 755)) ; ens_1 d_2 ;(chain "B" and (resid 654 through 675 or (resid 676 through 677 and (name N or name CA or name C or name O or name CB )) or resid 678 or (resid 679 and (name N or name CA or name C or name O or name CB )) or resid 680 or (resid 681 through 682 and (name N or name CA or name C or name O or name CB )) or resid 683 through 746 or (resid 747 and (name N or name CA or name C or name O or name CB )) or resid 748 through 755)) ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 A MET 6 . A CYS 107 . A MET 654 A CYS 755 ? ? ens_1 d_2 1 B MET 6 . B CYS 107 . B MET 654 B CYS 755 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 8CKL _struct.title 'Semaphorin-5A TSR 3-4 domains in complex with sucrose octasulfate (SOS)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8CKL _struct_keywords.text 'semaphorin, cell signalling, axon guidance cue, glycosaminoglycan binding protein, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SEM5A_HUMAN _struct_ref.pdbx_db_accession Q13591 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQRFRY TCKARLADPNLLEVGRQRIEMRYCSSDGTSGCST ; _struct_ref.pdbx_align_begin 652 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8CKL A 4 ? 117 ? Q13591 652 ? 765 ? 652 765 2 1 8CKL B 4 ? 117 ? Q13591 652 ? 765 ? 652 765 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8CKL GLU A 1 ? UNP Q13591 ? ? 'expression tag' 649 1 1 8CKL THR A 2 ? UNP Q13591 ? ? 'expression tag' 650 2 1 8CKL GLY A 3 ? UNP Q13591 ? ? 'expression tag' 651 3 1 8CKL GLY A 118 ? UNP Q13591 ? ? 'expression tag' 766 4 1 8CKL THR A 119 ? UNP Q13591 ? ? 'expression tag' 767 5 1 8CKL LEU A 120 ? UNP Q13591 ? ? 'expression tag' 768 6 1 8CKL GLU A 121 ? UNP Q13591 ? ? 'expression tag' 769 7 1 8CKL VAL A 122 ? UNP Q13591 ? ? 'expression tag' 770 8 1 8CKL LEU A 123 ? UNP Q13591 ? ? 'expression tag' 771 9 1 8CKL PHE A 124 ? UNP Q13591 ? ? 'expression tag' 772 10 1 8CKL GLN A 125 ? UNP Q13591 ? ? 'expression tag' 773 11 2 8CKL GLU B 1 ? UNP Q13591 ? ? 'expression tag' 649 12 2 8CKL THR B 2 ? UNP Q13591 ? ? 'expression tag' 650 13 2 8CKL GLY B 3 ? UNP Q13591 ? ? 'expression tag' 651 14 2 8CKL GLY B 118 ? UNP Q13591 ? ? 'expression tag' 766 15 2 8CKL THR B 119 ? UNP Q13591 ? ? 'expression tag' 767 16 2 8CKL LEU B 120 ? UNP Q13591 ? ? 'expression tag' 768 17 2 8CKL GLU B 121 ? UNP Q13591 ? ? 'expression tag' 769 18 2 8CKL VAL B 122 ? UNP Q13591 ? ? 'expression tag' 770 19 2 8CKL LEU B 123 ? UNP Q13591 ? ? 'expression tag' 771 20 2 8CKL PHE B 124 ? UNP Q13591 ? ? 'expression tag' 772 21 2 8CKL GLN B 125 ? UNP Q13591 ? ? 'expression tag' 773 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5910 ? 1 MORE -30 ? 1 'SSA (A^2)' 13050 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ;S-SAD was used for phasing of an isomorphous structure - the molecular replacement template, providing experimental evidence for the position of sulfur atoms within Cys and Met residues. ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 91 ? ASN A 93 ? ASP A 739 ASN A 741 5 ? 3 HELX_P HELX_P2 AA2 ASP B 91 ? ASN B 93 ? ASP B 739 ASN B 741 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 48 SG ? ? A CYS 665 A CYS 696 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 669 A CYS 701 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 680 A CYS 686 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? A CYS 41 SG ? ? ? 1_555 B CYS 41 SG ? ? A CYS 689 B CYS 689 1_555 ? ? ? ? ? ? ? 1.998 ? ? disulf5 disulf ? ? A CYS 85 SG ? ? ? 1_555 B CYS 85 SG ? ? A CYS 733 B CYS 733 1_555 ? ? ? ? ? ? ? 1.999 ? ? disulf6 disulf ? ? B CYS 17 SG ? ? ? 1_555 B CYS 48 SG ? ? B CYS 665 B CYS 696 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf7 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 53 SG ? ? B CYS 669 B CYS 701 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf8 disulf ? ? B CYS 32 SG ? ? ? 1_555 B CYS 38 SG ? ? B CYS 680 B CYS 686 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale one ? A TRP 8 CD1 ? ? ? 1_555 E MAN . C1 ? ? A TRP 656 A MAN 802 1_555 ? ? ? ? ? ? ? 1.492 ? C-Mannosylation covale2 covale one ? A TRP 11 CD1 ? ? ? 1_555 D MAN . C1 ? ? A TRP 659 A MAN 801 1_555 ? ? ? ? ? ? ? 1.491 ? C-Mannosylation covale3 covale one ? B TRP 8 CD1 ? ? ? 1_555 F MAN . C1 ? ? B TRP 656 B MAN 801 1_555 ? ? ? ? ? ? ? 1.491 ? C-Mannosylation covale4 covale one ? B TRP 11 CD1 ? ? ? 1_555 G MAN . C1 ? ? B TRP 659 B MAN 802 1_555 ? ? ? ? ? ? ? 1.491 ? C-Mannosylation covale5 covale both ? C GU4 . C1 ? ? ? 1_555 C YYJ . O2 ? ? H GU4 1 H YYJ 2 1_555 ? ? ? ? ? ? ? 1.450 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 2 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 24 ? ARG A 29 ? GLY A 672 ARG A 677 AA1 2 VAL A 43 ? CYS A 48 ? VAL A 691 CYS A 696 AA2 1 GLU A 55 ? THR A 59 ? GLU A 703 THR A 707 AA2 2 THR A 84 ? ARG A 88 ? THR A 732 ARG A 736 AA2 3 LEU B 95 ? VAL B 97 ? LEU B 743 VAL B 745 AA3 1 THR A 66 ? PRO A 67 ? THR A 714 PRO A 715 AA3 2 TYR A 77 ? ARG A 82 ? TYR A 725 ARG A 730 AA3 3 ARG B 101 ? TYR B 106 ? ARG B 749 TYR B 754 AA4 1 LEU A 95 ? VAL A 97 ? LEU A 743 VAL A 745 AA4 2 THR B 84 ? ARG B 88 ? THR B 732 ARG B 736 AA4 3 GLU B 55 ? THR B 59 ? GLU B 703 THR B 707 AA5 1 ARG A 101 ? TYR A 106 ? ARG A 749 TYR A 754 AA5 2 TYR B 77 ? ARG B 82 ? TYR B 725 ARG B 730 AA5 3 THR B 66 ? PRO B 67 ? THR B 714 PRO B 715 AA6 1 PHE B 7 ? TRP B 8 ? PHE B 655 TRP B 656 AA6 2 CYS B 32 ? GLU B 33 ? CYS B 680 GLU B 681 AA7 1 GLY B 24 ? ARG B 29 ? GLY B 672 ARG B 677 AA7 2 VAL B 43 ? CYS B 48 ? VAL B 691 CYS B 696 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 26 ? N GLN A 674 O GLN A 46 ? O GLN A 694 AA2 1 2 N LEU A 56 ? N LEU A 704 O ALA A 87 ? O ALA A 735 AA2 2 3 N LYS A 86 ? N LYS A 734 O GLU B 96 ? O GLU B 744 AA3 1 2 N THR A 66 ? N THR A 714 O GLN A 79 ? O GLN A 727 AA3 2 3 N GLU A 78 ? N GLU A 726 O ARG B 105 ? O ARG B 753 AA4 1 2 N GLU A 96 ? N GLU A 744 O LYS B 86 ? O LYS B 734 AA4 2 3 O CYS B 85 ? O CYS B 733 N LYS B 58 ? N LYS B 706 AA5 1 2 N ARG A 105 ? N ARG A 753 O GLU B 78 ? O GLU B 726 AA5 2 3 O GLN B 79 ? O GLN B 727 N THR B 66 ? N THR B 714 AA6 1 2 N PHE B 7 ? N PHE B 655 O GLU B 33 ? O GLU B 681 AA7 1 2 N GLN B 26 ? N GLN B 674 O GLN B 46 ? O GLN B 694 # _pdbx_entry_details.entry_id 8CKL _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NE _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 749 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 751 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_556 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 663 ? ? -77.72 -169.29 2 1 GLU B 663 ? ? 64.60 -168.49 3 1 PHE B 772 ? ? -97.85 41.20 # _pdbx_molecule_features.prd_id PRD_900013 _pdbx_molecule_features.name 'sucrose octasulfate' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Substrate analog' _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900013 _pdbx_molecule.asym_id C # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 17.2682087471 -18.0141651923 5.6666472594 1.82582098144 ? 0.00933867596026 ? 0.0853943741939 ? 0.44792438039 ? -0.102914898914 ? 0.725960272506 ? 1.71924566994 ? 1.47305299355 ? 2.05523331023 ? 2.83352371561 ? 1.83919044018 ? 2.94532301768 ? 0.138274325201 ? 0.390479039256 ? -0.293424696103 ? -0.612719954795 ? 0.850817471483 ? -0.856830554688 ? 0.117076307905 ? 0.321191987897 ? -0.436046988309 ? 2 'X-RAY DIFFRACTION' ? refined 7.87369411391 13.2719789373 39.0085533747 -0.0728713055955 ? -0.0228964069791 ? 0.112634321533 ? 0.32478138455 ? 0.135235723279 ? 0.531515948247 ? 2.21320650762 ? -0.403988289045 ? 0.0751957878149 ? 1.84116584775 ? -0.399972153518 ? 2.55539885369 ? 0.0520329750878 ? -0.0486174198313 ? 0.191737349373 ? -0.348512613053 ? 0.241766687048 ? 0.555996538702 ? 0.119095407738 ? -0.463567524709 ? 1.26601769977 ? 3 'X-RAY DIFFRACTION' ? refined 2.88797220546 -21.6606401399 12.1327869904 1.41374701094 ? 0.081558896538 ? -0.123080536899 ? 0.141104356629 ? -0.0305760884836 ? 0.20240791758 ? 0.979961483942 ? 0.540157538322 ? -0.284675216897 ? 0.973199853735 ? 0.743746932216 ? 1.29264068898 ? -0.316357864679 ? 0.185952589907 ? -0.417806253097 ? -0.571560245238 ? 0.117844770895 ? 0.0227585747942 ? 1.13884921721 ? 0.0380395670593 ? -1.0394165762 ? 4 'X-RAY DIFFRACTION' ? refined 8.22987257275 -34.0112333558 4.67639196455 1.9983970959 ? 0.279182468268 ? 0.0797963870976 ? 0.569215070954 ? 0.278261658137 ? 0.999364330353 ? 2.41736937086 ? 1.07077683525 ? -1.90518189956 ? 7.01918507715 ? -1.09691920004 ? 1.51391410118 ? 0.296252642799 ? 0.145637617249 ? -0.928324392009 ? -1.91327994948 ? -0.112571887412 ? 0.226180258984 ? 0.620192047051 ? 0.189716897012 ? 0.252039081015 ? 5 'X-RAY DIFFRACTION' ? refined 4.77734998988 -17.7811407509 9.87989246279 1.92334844781 ? -0.161080604603 ? -0.371561806567 ? 0.480733538387 ? 0.12156225958 ? 1.08990431101 ? 4.89354835861 ? -0.693858371385 ? -0.457922853373 ? 4.95321295272 ? -1.26735769789 ? 0.495112314565 ? -0.683862462237 ? 0.207023339119 ? -1.05859569228 ? -1.44014380787 ? -0.0381942988514 ? 0.130642406393 ? 0.335585840222 ? -0.0558702587203 ? 0.554819400237 ? 6 'X-RAY DIFFRACTION' ? refined 0.478907257905 4.45736798722 31.4319241723 0.000786380266411 ? 0.076294245431 ? -0.0110531395338 ? 0.523807783643 ? 0.115456271432 ? 0.536080485348 ? 1.85054579377 ? -1.27148524277 ? -1.45607435127 ? 4.37180465007 ? -0.992810143982 ? 2.26989704194 ? -0.0259110645163 ? 0.293307453429 ? -0.093594547116 ? -0.846503144742 ? -0.349525166013 ? 0.174672286433 ? 0.61392711395 ? -0.44102785975 ? -0.100886130779 ? 7 'X-RAY DIFFRACTION' ? refined -3.33247043056 22.1807395943 49.5217633871 0.188213906232 ? 0.070107274513 ? 0.0372597337266 ? 0.506578570537 ? 0.172668504444 ? 0.78916802684 ? 4.75309776715 ? -3.10931219047 ? -2.40812292465 ? 3.81166041774 ? -1.25235349392 ? 5.73676218692 ? 0.0213876996729 ? -0.175334442106 ? 1.17287625121 ? 0.466209302716 ? 0.891935396013 ? 0.301640708997 ? -0.395061019864 ? 0.172437985705 ? 0.0994137690499 ? 8 'X-RAY DIFFRACTION' ? refined 3.52355447541 4.12563788494 32.4803268055 0.399822265951 ? -0.0195949689861 ? 0.0742242454518 ? 0.279106032007 ? -0.0332308914468 ? 0.772065821375 ? 0.473080047344 ? 1.10045642417 ? 1.48654469482 ? 4.3218414881 ? 2.04743064754 ? 5.76375393343 ? -0.128252417389 ? 0.19328241339 ? -1.17668328923 ? -0.157809551364 ? 0.177310369591 ? -0.0101438322776 ? 1.45574113776 ? -0.0272261925947 ? 0.0308840965175 ? 9 'X-RAY DIFFRACTION' ? refined 11.0507921549 11.3365570716 44.4747060422 0.0904619354133 ? -0.063399014388 ? 0.0242830153544 ? 0.511727192958 ? -0.139934286869 ? 0.322031577728 ? 3.6047524345 ? 1.71217805584 ? 3.12253868776 ? 2.57067207794 ? 0.67419224645 ? 3.08514105439 ? 0.180975614545 ? -0.0650865233004 ? -0.542786502416 ? 0.108488210833 ? 0.151214552685 ? 0.159119389157 ? 0.299745078942 ? -0.336826029399 ? 0.424698394521 ? 10 'X-RAY DIFFRACTION' ? refined 17.0857888882 45.2013624849 51.6573449824 0.13508146959 ? 0.134256223545 ? 0.042559748785 ? 0.600244658772 ? -0.185354701498 ? 0.622619548353 ? 1.53707634179 ? -0.330272601917 ? -0.05960901592 ? 0.163652149164 ? -0.221549196415 ? 0.894825835731 ? 0.300131383001 ? 0.188229723769 ? 0.0382859571483 ? -0.0696378890973 ? 0.041236671329 ? -0.0282232313347 ? -0.02778613129 ? 0.124565781484 ? 1.10225091993 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A 1 A 654 ? A 43 A 696 ? ? ;chain 'A' and (resid 654 through 696 ) ; 2 'X-RAY DIFFRACTION' 2 A 44 A 697 ? A 96 A 756 ? ? ;chain 'A' and (resid 697 through 756 ) ; 3 'X-RAY DIFFRACTION' 3 B 1 B 654 ? B 24 B 677 ? ? ;chain 'B' and (resid 654 through 677 ) ; 4 'X-RAY DIFFRACTION' 4 B 25 B 678 ? B 37 B 690 ? ? ;chain 'B' and (resid 678 through 690 ) ; 5 'X-RAY DIFFRACTION' 5 B 38 B 691 ? B 43 B 696 ? ? ;chain 'B' and (resid 691 through 696 ) ; 6 'X-RAY DIFFRACTION' 6 B 44 B 697 ? B 59 B 712 ? ? ;chain 'B' and (resid 697 through 712 ) ; 7 'X-RAY DIFFRACTION' 7 B 60 B 713 ? B 69 B 729 ? ? ;chain 'B' and (resid 713 through 729 ) ; 8 'X-RAY DIFFRACTION' 8 B 70 B 730 ? B 82 B 742 ? ? ;chain 'B' and (resid 730 through 742 ) ; 9 'X-RAY DIFFRACTION' 9 B 83 B 743 ? B 92 B 752 ? ? ;chain 'B' and (resid 743 through 752 ) ; 10 'X-RAY DIFFRACTION' 10 B 93 B 753 ? B 101 B 773 ? ? ;chain 'B' and (resid 753 through 773 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 649 ? A GLU 1 2 1 Y 1 A THR 650 ? A THR 2 3 1 Y 1 A GLY 651 ? A GLY 3 4 1 Y 1 A PRO 652 ? A PRO 4 5 1 Y 1 A HIS 653 ? A HIS 5 6 1 Y 1 A ASN 717 ? A ASN 69 7 1 Y 1 A ILE 718 ? A ILE 70 8 1 Y 1 A SER 719 ? A SER 71 9 1 Y 1 A ASP 720 ? A ASP 72 10 1 Y 1 A ASN 721 ? A ASN 73 11 1 Y 1 A GLY 722 ? A GLY 74 12 1 Y 1 A GLY 723 ? A GLY 75 13 1 Y 1 A SER 757 ? A SER 109 14 1 Y 1 A ASP 758 ? A ASP 110 15 1 Y 1 A GLY 759 ? A GLY 111 16 1 Y 1 A THR 760 ? A THR 112 17 1 Y 1 A SER 761 ? A SER 113 18 1 Y 1 A GLY 762 ? A GLY 114 19 1 Y 1 A CYS 763 ? A CYS 115 20 1 Y 1 A SER 764 ? A SER 116 21 1 Y 1 A THR 765 ? A THR 117 22 1 Y 1 A GLY 766 ? A GLY 118 23 1 Y 1 A THR 767 ? A THR 119 24 1 Y 1 A LEU 768 ? A LEU 120 25 1 Y 1 A GLU 769 ? A GLU 121 26 1 Y 1 A VAL 770 ? A VAL 122 27 1 Y 1 A LEU 771 ? A LEU 123 28 1 Y 1 A PHE 772 ? A PHE 124 29 1 Y 1 A GLN 773 ? A GLN 125 30 1 Y 1 B GLU 649 ? B GLU 1 31 1 Y 1 B THR 650 ? B THR 2 32 1 Y 1 B GLY 651 ? B GLY 3 33 1 Y 1 B PRO 652 ? B PRO 4 34 1 Y 1 B HIS 653 ? B HIS 5 35 1 Y 1 B ASN 717 ? B ASN 69 36 1 Y 1 B ILE 718 ? B ILE 70 37 1 Y 1 B SER 719 ? B SER 71 38 1 Y 1 B ASP 720 ? B ASP 72 39 1 Y 1 B ASN 721 ? B ASN 73 40 1 Y 1 B GLY 722 ? B GLY 74 41 1 Y 1 B GLY 723 ? B GLY 75 42 1 Y 1 B SER 756 ? B SER 108 43 1 Y 1 B SER 757 ? B SER 109 44 1 Y 1 B ASP 758 ? B ASP 110 45 1 Y 1 B GLY 759 ? B GLY 111 46 1 Y 1 B THR 760 ? B THR 112 47 1 Y 1 B SER 761 ? B SER 113 48 1 Y 1 B GLY 762 ? B GLY 114 49 1 Y 1 B CYS 763 ? B CYS 115 50 1 Y 1 B SER 764 ? B SER 116 51 1 Y 1 B THR 765 ? B THR 117 52 1 Y 1 B GLY 766 ? B GLY 118 53 1 Y 1 B THR 767 ? B THR 119 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GU4 O1 O N N 137 GU4 C1 C N S 138 GU4 O5 O N N 139 GU4 C5 C N R 140 GU4 C6 C N N 141 GU4 O6 O N N 142 GU4 S6 S N N 143 GU4 O22 O N N 144 GU4 O23 O N N 145 GU4 O21 O N N 146 GU4 C4 C N R 147 GU4 O4 O N N 148 GU4 S4 S N N 149 GU4 O25 O N N 150 GU4 O26 O N N 151 GU4 O24 O N N 152 GU4 C3 C N S 153 GU4 O3 O N N 154 GU4 S3 S N N 155 GU4 O28 O N N 156 GU4 O29 O N N 157 GU4 O27 O N N 158 GU4 C2 C N R 159 GU4 O2 O N N 160 GU4 S2 S N N 161 GU4 O11 O N N 162 GU4 O12 O N N 163 GU4 O10 O N N 164 GU4 HO1 H N N 165 GU4 H1 H N N 166 GU4 H5 H N N 167 GU4 H61 H N N 168 GU4 H62 H N N 169 GU4 H4 H N N 170 GU4 H3 H N N 171 GU4 H2 H N N 172 GU4 HO21 H N N 173 GU4 HO24 H N N 174 GU4 HO29 H N N 175 GU4 HO10 H N N 176 HIS N N N N 177 HIS CA C N S 178 HIS C C N N 179 HIS O O N N 180 HIS CB C N N 181 HIS CG C Y N 182 HIS ND1 N Y N 183 HIS CD2 C Y N 184 HIS CE1 C Y N 185 HIS NE2 N Y N 186 HIS OXT O N N 187 HIS H H N N 188 HIS H2 H N N 189 HIS HA H N N 190 HIS HB2 H N N 191 HIS HB3 H N N 192 HIS HD1 H N N 193 HIS HD2 H N N 194 HIS HE1 H N N 195 HIS HE2 H N N 196 HIS HXT H N N 197 ILE N N N N 198 ILE CA C N S 199 ILE C C N N 200 ILE O O N N 201 ILE CB C N S 202 ILE CG1 C N N 203 ILE CG2 C N N 204 ILE CD1 C N N 205 ILE OXT O N N 206 ILE H H N N 207 ILE H2 H N N 208 ILE HA H N N 209 ILE HB H N N 210 ILE HG12 H N N 211 ILE HG13 H N N 212 ILE HG21 H N N 213 ILE HG22 H N N 214 ILE HG23 H N N 215 ILE HD11 H N N 216 ILE HD12 H N N 217 ILE HD13 H N N 218 ILE HXT H N N 219 LEU N N N N 220 LEU CA C N S 221 LEU C C N N 222 LEU O O N N 223 LEU CB C N N 224 LEU CG C N N 225 LEU CD1 C N N 226 LEU CD2 C N N 227 LEU OXT O N N 228 LEU H H N N 229 LEU H2 H N N 230 LEU HA H N N 231 LEU HB2 H N N 232 LEU HB3 H N N 233 LEU HG H N N 234 LEU HD11 H N N 235 LEU HD12 H N N 236 LEU HD13 H N N 237 LEU HD21 H N N 238 LEU HD22 H N N 239 LEU HD23 H N N 240 LEU HXT H N N 241 LYS N N N N 242 LYS CA C N S 243 LYS C C N N 244 LYS O O N N 245 LYS CB C N N 246 LYS CG C N N 247 LYS CD C N N 248 LYS CE C N N 249 LYS NZ N N N 250 LYS OXT O N N 251 LYS H H N N 252 LYS H2 H N N 253 LYS HA H N N 254 LYS HB2 H N N 255 LYS HB3 H N N 256 LYS HG2 H N N 257 LYS HG3 H N N 258 LYS HD2 H N N 259 LYS HD3 H N N 260 LYS HE2 H N N 261 LYS HE3 H N N 262 LYS HZ1 H N N 263 LYS HZ2 H N N 264 LYS HZ3 H N N 265 LYS HXT H N N 266 MAN C1 C N S 267 MAN C2 C N S 268 MAN C3 C N S 269 MAN C4 C N S 270 MAN C5 C N R 271 MAN C6 C N N 272 MAN O1 O N N 273 MAN O2 O N N 274 MAN O3 O N N 275 MAN O4 O N N 276 MAN O5 O N N 277 MAN O6 O N N 278 MAN H1 H N N 279 MAN H2 H N N 280 MAN H3 H N N 281 MAN H4 H N N 282 MAN H5 H N N 283 MAN H61 H N N 284 MAN H62 H N N 285 MAN HO1 H N N 286 MAN HO2 H N N 287 MAN HO3 H N N 288 MAN HO4 H N N 289 MAN HO6 H N N 290 MET N N N N 291 MET CA C N S 292 MET C C N N 293 MET O O N N 294 MET CB C N N 295 MET CG C N N 296 MET SD S N N 297 MET CE C N N 298 MET OXT O N N 299 MET H H N N 300 MET H2 H N N 301 MET HA H N N 302 MET HB2 H N N 303 MET HB3 H N N 304 MET HG2 H N N 305 MET HG3 H N N 306 MET HE1 H N N 307 MET HE2 H N N 308 MET HE3 H N N 309 MET HXT H N N 310 PHE N N N N 311 PHE CA C N S 312 PHE C C N N 313 PHE O O N N 314 PHE CB C N N 315 PHE CG C Y N 316 PHE CD1 C Y N 317 PHE CD2 C Y N 318 PHE CE1 C Y N 319 PHE CE2 C Y N 320 PHE CZ C Y N 321 PHE OXT O N N 322 PHE H H N N 323 PHE H2 H N N 324 PHE HA H N N 325 PHE HB2 H N N 326 PHE HB3 H N N 327 PHE HD1 H N N 328 PHE HD2 H N N 329 PHE HE1 H N N 330 PHE HE2 H N N 331 PHE HZ H N N 332 PHE HXT H N N 333 PRO N N N N 334 PRO CA C N S 335 PRO C C N N 336 PRO O O N N 337 PRO CB C N N 338 PRO CG C N N 339 PRO CD C N N 340 PRO OXT O N N 341 PRO H H N N 342 PRO HA H N N 343 PRO HB2 H N N 344 PRO HB3 H N N 345 PRO HG2 H N N 346 PRO HG3 H N N 347 PRO HD2 H N N 348 PRO HD3 H N N 349 PRO HXT H N N 350 SER N N N N 351 SER CA C N S 352 SER C C N N 353 SER O O N N 354 SER CB C N N 355 SER OG O N N 356 SER OXT O N N 357 SER H H N N 358 SER H2 H N N 359 SER HA H N N 360 SER HB2 H N N 361 SER HB3 H N N 362 SER HG H N N 363 SER HXT H N N 364 THR N N N N 365 THR CA C N S 366 THR C C N N 367 THR O O N N 368 THR CB C N R 369 THR OG1 O N N 370 THR CG2 C N N 371 THR OXT O N N 372 THR H H N N 373 THR H2 H N N 374 THR HA H N N 375 THR HB H N N 376 THR HG1 H N N 377 THR HG21 H N N 378 THR HG22 H N N 379 THR HG23 H N N 380 THR HXT H N N 381 TRP N N N N 382 TRP CA C N S 383 TRP C C N N 384 TRP O O N N 385 TRP CB C N N 386 TRP CG C Y N 387 TRP CD1 C Y N 388 TRP CD2 C Y N 389 TRP NE1 N Y N 390 TRP CE2 C Y N 391 TRP CE3 C Y N 392 TRP CZ2 C Y N 393 TRP CZ3 C Y N 394 TRP CH2 C Y N 395 TRP OXT O N N 396 TRP H H N N 397 TRP H2 H N N 398 TRP HA H N N 399 TRP HB2 H N N 400 TRP HB3 H N N 401 TRP HD1 H N N 402 TRP HE1 H N N 403 TRP HE3 H N N 404 TRP HZ2 H N N 405 TRP HZ3 H N N 406 TRP HH2 H N N 407 TRP HXT H N N 408 TYR N N N N 409 TYR CA C N S 410 TYR C C N N 411 TYR O O N N 412 TYR CB C N N 413 TYR CG C Y N 414 TYR CD1 C Y N 415 TYR CD2 C Y N 416 TYR CE1 C Y N 417 TYR CE2 C Y N 418 TYR CZ C Y N 419 TYR OH O N N 420 TYR OXT O N N 421 TYR H H N N 422 TYR H2 H N N 423 TYR HA H N N 424 TYR HB2 H N N 425 TYR HB3 H N N 426 TYR HD1 H N N 427 TYR HD2 H N N 428 TYR HE1 H N N 429 TYR HE2 H N N 430 TYR HH H N N 431 TYR HXT H N N 432 VAL N N N N 433 VAL CA C N S 434 VAL C C N N 435 VAL O O N N 436 VAL CB C N N 437 VAL CG1 C N N 438 VAL CG2 C N N 439 VAL OXT O N N 440 VAL H H N N 441 VAL H2 H N N 442 VAL HA H N N 443 VAL HB H N N 444 VAL HG11 H N N 445 VAL HG12 H N N 446 VAL HG13 H N N 447 VAL HG21 H N N 448 VAL HG22 H N N 449 VAL HG23 H N N 450 VAL HXT H N N 451 YYJ C1 C N N 452 YYJ C2 C N R 453 YYJ C3 C N S 454 YYJ C4 C N R 455 YYJ C5 C N R 456 YYJ C6 C N N 457 YYJ O1 O N N 458 YYJ O1S1 O N N 459 YYJ O1S3 O N N 460 YYJ O1S4 O N N 461 YYJ O1S6 O N N 462 YYJ O2 O N N 463 YYJ O2S1 O N N 464 YYJ O2S3 O N N 465 YYJ O2S4 O N N 466 YYJ O2S6 O N N 467 YYJ O3 O N N 468 YYJ O3S1 O N N 469 YYJ O3S3 O N N 470 YYJ O3S4 O N N 471 YYJ O3S6 O N N 472 YYJ O4 O N N 473 YYJ O5 O N N 474 YYJ O6 O N N 475 YYJ S1 S N N 476 YYJ S3 S N N 477 YYJ S4 S N N 478 YYJ S6 S N N 479 YYJ H11 H N N 480 YYJ H12 H N N 481 YYJ H1S1 H N N 482 YYJ H1S3 H N N 483 YYJ H1S4 H N N 484 YYJ H1S6 H N N 485 YYJ HO2 H N N 486 YYJ H3 H N N 487 YYJ H4 H N N 488 YYJ H5 H N N 489 YYJ H61 H N N 490 YYJ H62 H N N 491 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GU4 O1 C1 sing N N 129 GU4 O1 HO1 sing N N 130 GU4 C1 O5 sing N N 131 GU4 C1 C2 sing N N 132 GU4 C1 H1 sing N N 133 GU4 O5 C5 sing N N 134 GU4 C5 C6 sing N N 135 GU4 C5 C4 sing N N 136 GU4 C5 H5 sing N N 137 GU4 C6 O6 sing N N 138 GU4 C6 H61 sing N N 139 GU4 C6 H62 sing N N 140 GU4 O6 S6 sing N N 141 GU4 S6 O22 doub N N 142 GU4 S6 O23 doub N N 143 GU4 S6 O21 sing N N 144 GU4 C4 O4 sing N N 145 GU4 C4 C3 sing N N 146 GU4 C4 H4 sing N N 147 GU4 O4 S4 sing N N 148 GU4 S4 O25 doub N N 149 GU4 S4 O26 doub N N 150 GU4 S4 O24 sing N N 151 GU4 C3 O3 sing N N 152 GU4 C3 C2 sing N N 153 GU4 C3 H3 sing N N 154 GU4 O3 S3 sing N N 155 GU4 S3 O28 doub N N 156 GU4 S3 O29 sing N N 157 GU4 S3 O27 doub N N 158 GU4 C2 O2 sing N N 159 GU4 C2 H2 sing N N 160 GU4 O2 S2 sing N N 161 GU4 S2 O11 doub N N 162 GU4 S2 O12 doub N N 163 GU4 S2 O10 sing N N 164 GU4 O21 HO21 sing N N 165 GU4 O24 HO24 sing N N 166 GU4 O29 HO29 sing N N 167 GU4 O10 HO10 sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 ILE N CA sing N N 190 ILE N H sing N N 191 ILE N H2 sing N N 192 ILE CA C sing N N 193 ILE CA CB sing N N 194 ILE CA HA sing N N 195 ILE C O doub N N 196 ILE C OXT sing N N 197 ILE CB CG1 sing N N 198 ILE CB CG2 sing N N 199 ILE CB HB sing N N 200 ILE CG1 CD1 sing N N 201 ILE CG1 HG12 sing N N 202 ILE CG1 HG13 sing N N 203 ILE CG2 HG21 sing N N 204 ILE CG2 HG22 sing N N 205 ILE CG2 HG23 sing N N 206 ILE CD1 HD11 sing N N 207 ILE CD1 HD12 sing N N 208 ILE CD1 HD13 sing N N 209 ILE OXT HXT sing N N 210 LEU N CA sing N N 211 LEU N H sing N N 212 LEU N H2 sing N N 213 LEU CA C sing N N 214 LEU CA CB sing N N 215 LEU CA HA sing N N 216 LEU C O doub N N 217 LEU C OXT sing N N 218 LEU CB CG sing N N 219 LEU CB HB2 sing N N 220 LEU CB HB3 sing N N 221 LEU CG CD1 sing N N 222 LEU CG CD2 sing N N 223 LEU CG HG sing N N 224 LEU CD1 HD11 sing N N 225 LEU CD1 HD12 sing N N 226 LEU CD1 HD13 sing N N 227 LEU CD2 HD21 sing N N 228 LEU CD2 HD22 sing N N 229 LEU CD2 HD23 sing N N 230 LEU OXT HXT sing N N 231 LYS N CA sing N N 232 LYS N H sing N N 233 LYS N H2 sing N N 234 LYS CA C sing N N 235 LYS CA CB sing N N 236 LYS CA HA sing N N 237 LYS C O doub N N 238 LYS C OXT sing N N 239 LYS CB CG sing N N 240 LYS CB HB2 sing N N 241 LYS CB HB3 sing N N 242 LYS CG CD sing N N 243 LYS CG HG2 sing N N 244 LYS CG HG3 sing N N 245 LYS CD CE sing N N 246 LYS CD HD2 sing N N 247 LYS CD HD3 sing N N 248 LYS CE NZ sing N N 249 LYS CE HE2 sing N N 250 LYS CE HE3 sing N N 251 LYS NZ HZ1 sing N N 252 LYS NZ HZ2 sing N N 253 LYS NZ HZ3 sing N N 254 LYS OXT HXT sing N N 255 MAN C1 C2 sing N N 256 MAN C1 O1 sing N N 257 MAN C1 O5 sing N N 258 MAN C1 H1 sing N N 259 MAN C2 C3 sing N N 260 MAN C2 O2 sing N N 261 MAN C2 H2 sing N N 262 MAN C3 C4 sing N N 263 MAN C3 O3 sing N N 264 MAN C3 H3 sing N N 265 MAN C4 C5 sing N N 266 MAN C4 O4 sing N N 267 MAN C4 H4 sing N N 268 MAN C5 C6 sing N N 269 MAN C5 O5 sing N N 270 MAN C5 H5 sing N N 271 MAN C6 O6 sing N N 272 MAN C6 H61 sing N N 273 MAN C6 H62 sing N N 274 MAN O1 HO1 sing N N 275 MAN O2 HO2 sing N N 276 MAN O3 HO3 sing N N 277 MAN O4 HO4 sing N N 278 MAN O6 HO6 sing N N 279 MET N CA sing N N 280 MET N H sing N N 281 MET N H2 sing N N 282 MET CA C sing N N 283 MET CA CB sing N N 284 MET CA HA sing N N 285 MET C O doub N N 286 MET C OXT sing N N 287 MET CB CG sing N N 288 MET CB HB2 sing N N 289 MET CB HB3 sing N N 290 MET CG SD sing N N 291 MET CG HG2 sing N N 292 MET CG HG3 sing N N 293 MET SD CE sing N N 294 MET CE HE1 sing N N 295 MET CE HE2 sing N N 296 MET CE HE3 sing N N 297 MET OXT HXT sing N N 298 PHE N CA sing N N 299 PHE N H sing N N 300 PHE N H2 sing N N 301 PHE CA C sing N N 302 PHE CA CB sing N N 303 PHE CA HA sing N N 304 PHE C O doub N N 305 PHE C OXT sing N N 306 PHE CB CG sing N N 307 PHE CB HB2 sing N N 308 PHE CB HB3 sing N N 309 PHE CG CD1 doub Y N 310 PHE CG CD2 sing Y N 311 PHE CD1 CE1 sing Y N 312 PHE CD1 HD1 sing N N 313 PHE CD2 CE2 doub Y N 314 PHE CD2 HD2 sing N N 315 PHE CE1 CZ doub Y N 316 PHE CE1 HE1 sing N N 317 PHE CE2 CZ sing Y N 318 PHE CE2 HE2 sing N N 319 PHE CZ HZ sing N N 320 PHE OXT HXT sing N N 321 PRO N CA sing N N 322 PRO N CD sing N N 323 PRO N H sing N N 324 PRO CA C sing N N 325 PRO CA CB sing N N 326 PRO CA HA sing N N 327 PRO C O doub N N 328 PRO C OXT sing N N 329 PRO CB CG sing N N 330 PRO CB HB2 sing N N 331 PRO CB HB3 sing N N 332 PRO CG CD sing N N 333 PRO CG HG2 sing N N 334 PRO CG HG3 sing N N 335 PRO CD HD2 sing N N 336 PRO CD HD3 sing N N 337 PRO OXT HXT sing N N 338 SER N CA sing N N 339 SER N H sing N N 340 SER N H2 sing N N 341 SER CA C sing N N 342 SER CA CB sing N N 343 SER CA HA sing N N 344 SER C O doub N N 345 SER C OXT sing N N 346 SER CB OG sing N N 347 SER CB HB2 sing N N 348 SER CB HB3 sing N N 349 SER OG HG sing N N 350 SER OXT HXT sing N N 351 THR N CA sing N N 352 THR N H sing N N 353 THR N H2 sing N N 354 THR CA C sing N N 355 THR CA CB sing N N 356 THR CA HA sing N N 357 THR C O doub N N 358 THR C OXT sing N N 359 THR CB OG1 sing N N 360 THR CB CG2 sing N N 361 THR CB HB sing N N 362 THR OG1 HG1 sing N N 363 THR CG2 HG21 sing N N 364 THR CG2 HG22 sing N N 365 THR CG2 HG23 sing N N 366 THR OXT HXT sing N N 367 TRP N CA sing N N 368 TRP N H sing N N 369 TRP N H2 sing N N 370 TRP CA C sing N N 371 TRP CA CB sing N N 372 TRP CA HA sing N N 373 TRP C O doub N N 374 TRP C OXT sing N N 375 TRP CB CG sing N N 376 TRP CB HB2 sing N N 377 TRP CB HB3 sing N N 378 TRP CG CD1 doub Y N 379 TRP CG CD2 sing Y N 380 TRP CD1 NE1 sing Y N 381 TRP CD1 HD1 sing N N 382 TRP CD2 CE2 doub Y N 383 TRP CD2 CE3 sing Y N 384 TRP NE1 CE2 sing Y N 385 TRP NE1 HE1 sing N N 386 TRP CE2 CZ2 sing Y N 387 TRP CE3 CZ3 doub Y N 388 TRP CE3 HE3 sing N N 389 TRP CZ2 CH2 doub Y N 390 TRP CZ2 HZ2 sing N N 391 TRP CZ3 CH2 sing Y N 392 TRP CZ3 HZ3 sing N N 393 TRP CH2 HH2 sing N N 394 TRP OXT HXT sing N N 395 TYR N CA sing N N 396 TYR N H sing N N 397 TYR N H2 sing N N 398 TYR CA C sing N N 399 TYR CA CB sing N N 400 TYR CA HA sing N N 401 TYR C O doub N N 402 TYR C OXT sing N N 403 TYR CB CG sing N N 404 TYR CB HB2 sing N N 405 TYR CB HB3 sing N N 406 TYR CG CD1 doub Y N 407 TYR CG CD2 sing Y N 408 TYR CD1 CE1 sing Y N 409 TYR CD1 HD1 sing N N 410 TYR CD2 CE2 doub Y N 411 TYR CD2 HD2 sing N N 412 TYR CE1 CZ doub Y N 413 TYR CE1 HE1 sing N N 414 TYR CE2 CZ sing Y N 415 TYR CE2 HE2 sing N N 416 TYR CZ OH sing N N 417 TYR OH HH sing N N 418 TYR OXT HXT sing N N 419 VAL N CA sing N N 420 VAL N H sing N N 421 VAL N H2 sing N N 422 VAL CA C sing N N 423 VAL CA CB sing N N 424 VAL CA HA sing N N 425 VAL C O doub N N 426 VAL C OXT sing N N 427 VAL CB CG1 sing N N 428 VAL CB CG2 sing N N 429 VAL CB HB sing N N 430 VAL CG1 HG11 sing N N 431 VAL CG1 HG12 sing N N 432 VAL CG1 HG13 sing N N 433 VAL CG2 HG21 sing N N 434 VAL CG2 HG22 sing N N 435 VAL CG2 HG23 sing N N 436 VAL OXT HXT sing N N 437 YYJ C1 C2 sing N N 438 YYJ C1 O1 sing N N 439 YYJ C1 H11 sing N N 440 YYJ C1 H12 sing N N 441 YYJ C2 C3 sing N N 442 YYJ C2 O2 sing N N 443 YYJ C2 O5 sing N N 444 YYJ C3 C4 sing N N 445 YYJ C3 O3 sing N N 446 YYJ C3 H3 sing N N 447 YYJ C4 C5 sing N N 448 YYJ C4 O4 sing N N 449 YYJ C4 H4 sing N N 450 YYJ C5 C6 sing N N 451 YYJ C5 O5 sing N N 452 YYJ C5 H5 sing N N 453 YYJ C6 O6 sing N N 454 YYJ C6 H61 sing N N 455 YYJ C6 H62 sing N N 456 YYJ O1 S1 sing N N 457 YYJ O1S1 S1 sing N N 458 YYJ O1S1 H1S1 sing N N 459 YYJ O1S3 H1S3 sing N N 460 YYJ O1S3 S3 sing N N 461 YYJ O1S4 S4 sing N N 462 YYJ O1S4 H1S4 sing N N 463 YYJ O1S6 H1S6 sing N N 464 YYJ O1S6 S6 sing N N 465 YYJ O2 HO2 sing N N 466 YYJ O2S1 S1 doub N N 467 YYJ O2S3 S3 doub N N 468 YYJ O2S4 S4 doub N N 469 YYJ O2S6 S6 doub N N 470 YYJ O3 S3 sing N N 471 YYJ O3S1 S1 doub N N 472 YYJ O3S3 S3 doub N N 473 YYJ O3S4 S4 doub N N 474 YYJ O3S6 S6 doub N N 475 YYJ O4 S4 sing N N 476 YYJ O6 S6 sing N N 477 # _pdbx_audit_support.funding_organization 'Medical Research Council (MRC, United Kingdom)' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number MR/T000503/1 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 YYJ 1 n 2 GU4 2 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list 1,2 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8CKG _pdbx_initial_refinement_model.details '8CKG contains the same protein construct, complexed with sulfate' # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8CKL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009425 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001657 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032499 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012063 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_