data_8CKM # _entry.id 8CKM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8CKM pdb_00008ckm 10.2210/pdb8ckm/pdb WWPDB D_1292128652 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8CKM _pdbx_database_status.recvd_initial_deposition_date 2023-02-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '8CKG contains the same protein complexed with sulfate' 8CKG unspecified PDB '8CKK contains the same protein complexed with nitrate' 8CKK unspecified PDB '8CKL contains the same protein complexed with sucrose octasulfate' 8CKL unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email yvonne.jones@strubi.ox.ac.uk _pdbx_contact_author.name_first E.Yvonne _pdbx_contact_author.name_last Jones _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3834-1893 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nagy, G.N.' 1 0000-0003-1761-5610 'Duman, R.' 2 ? 'Harlos, K.' 3 ? 'El Omari, K.' 4 ? 'Wagner, A.' 5 ? 'Jones, E.Y.' 6 0000-0002-3834-1893 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Semaphorin-5A TSR 3-4 domains' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagy, G.N.' 1 0000-0003-1761-5610 primary 'Duman, R.' 2 ? primary 'Harlos, K.' 3 ? primary 'El Omari, K.' 4 ? primary 'Wagner, A.' 5 ? primary 'Jones, E.Y.' 6 0000-0002-3834-1893 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Semaphorin-5A _entity.formula_weight 14054.702 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;N-terminal 'ET' peptide and C-terminal 'GTLEVLFQ' peptides are recombinant additions encoded by the expression vector ; # _entity_name_com.entity_id 1 _entity_name_com.name 'Semaphorin-F,Sema F' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ETGPHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQR FRYTCKARLADPNLLEVGRQRIEMRYCSSDGTSGCSTGTLEVLFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;ETGPHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQR FRYTCKARLADPNLLEVGRQRIEMRYCSSDGTSGCSTGTLEVLFQ ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 GLY n 1 4 PRO n 1 5 HIS n 1 6 MET n 1 7 PHE n 1 8 TRP n 1 9 THR n 1 10 GLY n 1 11 TRP n 1 12 GLY n 1 13 PRO n 1 14 TRP n 1 15 GLU n 1 16 ARG n 1 17 CYS n 1 18 THR n 1 19 ALA n 1 20 GLN n 1 21 CYS n 1 22 GLY n 1 23 GLY n 1 24 GLY n 1 25 ILE n 1 26 GLN n 1 27 ALA n 1 28 ARG n 1 29 ARG n 1 30 ARG n 1 31 ILE n 1 32 CYS n 1 33 GLU n 1 34 ASN n 1 35 GLY n 1 36 PRO n 1 37 ASP n 1 38 CYS n 1 39 ALA n 1 40 GLY n 1 41 CYS n 1 42 ASN n 1 43 VAL n 1 44 GLU n 1 45 TYR n 1 46 GLN n 1 47 SER n 1 48 CYS n 1 49 ASN n 1 50 THR n 1 51 ASN n 1 52 PRO n 1 53 CYS n 1 54 PRO n 1 55 GLU n 1 56 LEU n 1 57 LYS n 1 58 LYS n 1 59 THR n 1 60 THR n 1 61 PRO n 1 62 TRP n 1 63 THR n 1 64 PRO n 1 65 TRP n 1 66 THR n 1 67 PRO n 1 68 VAL n 1 69 ASN n 1 70 ILE n 1 71 SER n 1 72 ASP n 1 73 ASN n 1 74 GLY n 1 75 GLY n 1 76 HIS n 1 77 TYR n 1 78 GLU n 1 79 GLN n 1 80 ARG n 1 81 PHE n 1 82 ARG n 1 83 TYR n 1 84 THR n 1 85 CYS n 1 86 LYS n 1 87 ALA n 1 88 ARG n 1 89 LEU n 1 90 ALA n 1 91 ASP n 1 92 PRO n 1 93 ASN n 1 94 LEU n 1 95 LEU n 1 96 GLU n 1 97 VAL n 1 98 GLY n 1 99 ARG n 1 100 GLN n 1 101 ARG n 1 102 ILE n 1 103 GLU n 1 104 MET n 1 105 ARG n 1 106 TYR n 1 107 CYS n 1 108 SER n 1 109 SER n 1 110 ASP n 1 111 GLY n 1 112 THR n 1 113 SER n 1 114 GLY n 1 115 CYS n 1 116 SER n 1 117 THR n 1 118 GLY n 1 119 THR n 1 120 LEU n 1 121 GLU n 1 122 VAL n 1 123 LEU n 1 124 PHE n 1 125 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 125 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SEMA5A, SEMAF' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293T _entity_src_gen.pdbx_host_org_atcc CRL-3216 _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHL-sec _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 649 ? ? ? A . n A 1 2 THR 2 650 ? ? ? A . n A 1 3 GLY 3 651 ? ? ? A . n A 1 4 PRO 4 652 ? ? ? A . n A 1 5 HIS 5 653 ? ? ? A . n A 1 6 MET 6 654 ? ? ? A . n A 1 7 PHE 7 655 ? ? ? A . n A 1 8 TRP 8 656 656 TRP TRP A . n A 1 9 THR 9 657 657 THR THR A . n A 1 10 GLY 10 658 658 GLY GLY A . n A 1 11 TRP 11 659 659 TRP TRP A . n A 1 12 GLY 12 660 660 GLY GLY A . n A 1 13 PRO 13 661 661 PRO PRO A . n A 1 14 TRP 14 662 662 TRP TRP A . n A 1 15 GLU 15 663 663 GLU GLU A . n A 1 16 ARG 16 664 664 ARG ARG A . n A 1 17 CYS 17 665 665 CYS CYS A . n A 1 18 THR 18 666 666 THR THR A . n A 1 19 ALA 19 667 667 ALA ALA A . n A 1 20 GLN 20 668 668 GLN GLN A . n A 1 21 CYS 21 669 669 CYS CYS A . n A 1 22 GLY 22 670 670 GLY GLY A . n A 1 23 GLY 23 671 671 GLY GLY A . n A 1 24 GLY 24 672 672 GLY GLY A . n A 1 25 ILE 25 673 673 ILE ILE A . n A 1 26 GLN 26 674 674 GLN GLN A . n A 1 27 ALA 27 675 675 ALA ALA A . n A 1 28 ARG 28 676 676 ARG ARG A . n A 1 29 ARG 29 677 677 ARG ARG A . n A 1 30 ARG 30 678 678 ARG ARG A . n A 1 31 ILE 31 679 679 ILE ILE A . n A 1 32 CYS 32 680 680 CYS CYS A . n A 1 33 GLU 33 681 681 GLU GLU A . n A 1 34 ASN 34 682 682 ASN ASN A . n A 1 35 GLY 35 683 683 GLY GLY A . n A 1 36 PRO 36 684 684 PRO PRO A . n A 1 37 ASP 37 685 685 ASP ASP A . n A 1 38 CYS 38 686 686 CYS CYS A . n A 1 39 ALA 39 687 687 ALA ALA A . n A 1 40 GLY 40 688 688 GLY GLY A . n A 1 41 CYS 41 689 689 CYS CYS A . n A 1 42 ASN 42 690 690 ASN ASN A . n A 1 43 VAL 43 691 691 VAL VAL A . n A 1 44 GLU 44 692 692 GLU GLU A . n A 1 45 TYR 45 693 693 TYR TYR A . n A 1 46 GLN 46 694 694 GLN GLN A . n A 1 47 SER 47 695 695 SER SER A . n A 1 48 CYS 48 696 696 CYS CYS A . n A 1 49 ASN 49 697 697 ASN ASN A . n A 1 50 THR 50 698 698 THR THR A . n A 1 51 ASN 51 699 699 ASN ASN A . n A 1 52 PRO 52 700 700 PRO PRO A . n A 1 53 CYS 53 701 701 CYS CYS A . n A 1 54 PRO 54 702 702 PRO PRO A . n A 1 55 GLU 55 703 703 GLU GLU A . n A 1 56 LEU 56 704 704 LEU LEU A . n A 1 57 LYS 57 705 705 LYS LYS A . n A 1 58 LYS 58 706 706 LYS LYS A . n A 1 59 THR 59 707 707 THR THR A . n A 1 60 THR 60 708 708 THR THR A . n A 1 61 PRO 61 709 709 PRO PRO A . n A 1 62 TRP 62 710 710 TRP TRP A . n A 1 63 THR 63 711 711 THR THR A . n A 1 64 PRO 64 712 712 PRO PRO A . n A 1 65 TRP 65 713 713 TRP TRP A . n A 1 66 THR 66 714 714 THR THR A . n A 1 67 PRO 67 715 715 PRO PRO A . n A 1 68 VAL 68 716 716 VAL VAL A . n A 1 69 ASN 69 717 ? ? ? A . n A 1 70 ILE 70 718 ? ? ? A . n A 1 71 SER 71 719 ? ? ? A . n A 1 72 ASP 72 720 ? ? ? A . n A 1 73 ASN 73 721 ? ? ? A . n A 1 74 GLY 74 722 ? ? ? A . n A 1 75 GLY 75 723 ? ? ? A . n A 1 76 HIS 76 724 724 HIS HIS A . n A 1 77 TYR 77 725 725 TYR TYR A . n A 1 78 GLU 78 726 726 GLU GLU A . n A 1 79 GLN 79 727 727 GLN GLN A . n A 1 80 ARG 80 728 728 ARG ARG A . n A 1 81 PHE 81 729 729 PHE PHE A . n A 1 82 ARG 82 730 730 ARG ARG A . n A 1 83 TYR 83 731 731 TYR TYR A . n A 1 84 THR 84 732 732 THR THR A . n A 1 85 CYS 85 733 733 CYS CYS A . n A 1 86 LYS 86 734 734 LYS LYS A . n A 1 87 ALA 87 735 735 ALA ALA A . n A 1 88 ARG 88 736 736 ARG ARG A . n A 1 89 LEU 89 737 737 LEU LEU A . n A 1 90 ALA 90 738 738 ALA ALA A . n A 1 91 ASP 91 739 739 ASP ASP A . n A 1 92 PRO 92 740 740 PRO PRO A . n A 1 93 ASN 93 741 741 ASN ASN A . n A 1 94 LEU 94 742 742 LEU LEU A . n A 1 95 LEU 95 743 743 LEU LEU A . n A 1 96 GLU 96 744 744 GLU GLU A . n A 1 97 VAL 97 745 745 VAL VAL A . n A 1 98 GLY 98 746 746 GLY GLY A . n A 1 99 ARG 99 747 747 ARG ARG A . n A 1 100 GLN 100 748 748 GLN GLN A . n A 1 101 ARG 101 749 749 ARG ARG A . n A 1 102 ILE 102 750 750 ILE ILE A . n A 1 103 GLU 103 751 751 GLU GLU A . n A 1 104 MET 104 752 752 MET MET A . n A 1 105 ARG 105 753 753 ARG ARG A . n A 1 106 TYR 106 754 754 TYR TYR A . n A 1 107 CYS 107 755 755 CYS CYS A . n A 1 108 SER 108 756 ? ? ? A . n A 1 109 SER 109 757 ? ? ? A . n A 1 110 ASP 110 758 ? ? ? A . n A 1 111 GLY 111 759 ? ? ? A . n A 1 112 THR 112 760 ? ? ? A . n A 1 113 SER 113 761 ? ? ? A . n A 1 114 GLY 114 762 ? ? ? A . n A 1 115 CYS 115 763 ? ? ? A . n A 1 116 SER 116 764 ? ? ? A . n A 1 117 THR 117 765 ? ? ? A . n A 1 118 GLY 118 766 ? ? ? A . n A 1 119 THR 119 767 ? ? ? A . n A 1 120 LEU 120 768 ? ? ? A . n A 1 121 GLU 121 769 ? ? ? A . n A 1 122 VAL 122 770 ? ? ? A . n A 1 123 LEU 123 771 ? ? ? A . n A 1 124 PHE 124 772 ? ? ? A . n A 1 125 GLN 125 773 ? ? ? A . n B 1 1 GLU 1 649 ? ? ? B . n B 1 2 THR 2 650 ? ? ? B . n B 1 3 GLY 3 651 ? ? ? B . n B 1 4 PRO 4 652 ? ? ? B . n B 1 5 HIS 5 653 ? ? ? B . n B 1 6 MET 6 654 ? ? ? B . n B 1 7 PHE 7 655 655 PHE PHE B . n B 1 8 TRP 8 656 656 TRP TRP B . n B 1 9 THR 9 657 657 THR THR B . n B 1 10 GLY 10 658 658 GLY GLY B . n B 1 11 TRP 11 659 659 TRP TRP B . n B 1 12 GLY 12 660 660 GLY GLY B . n B 1 13 PRO 13 661 661 PRO PRO B . n B 1 14 TRP 14 662 662 TRP TRP B . n B 1 15 GLU 15 663 663 GLU GLU B . n B 1 16 ARG 16 664 664 ARG ARG B . n B 1 17 CYS 17 665 665 CYS CYS B . n B 1 18 THR 18 666 666 THR THR B . n B 1 19 ALA 19 667 667 ALA ALA B . n B 1 20 GLN 20 668 668 GLN GLN B . n B 1 21 CYS 21 669 669 CYS CYS B . n B 1 22 GLY 22 670 670 GLY GLY B . n B 1 23 GLY 23 671 671 GLY GLY B . n B 1 24 GLY 24 672 672 GLY GLY B . n B 1 25 ILE 25 673 673 ILE ILE B . n B 1 26 GLN 26 674 674 GLN GLN B . n B 1 27 ALA 27 675 675 ALA ALA B . n B 1 28 ARG 28 676 676 ARG ARG B . n B 1 29 ARG 29 677 677 ARG ARG B . n B 1 30 ARG 30 678 678 ARG ARG B . n B 1 31 ILE 31 679 679 ILE ILE B . n B 1 32 CYS 32 680 680 CYS CYS B . n B 1 33 GLU 33 681 681 GLU GLU B . n B 1 34 ASN 34 682 682 ASN ASN B . n B 1 35 GLY 35 683 683 GLY GLY B . n B 1 36 PRO 36 684 684 PRO PRO B . n B 1 37 ASP 37 685 685 ASP ASP B . n B 1 38 CYS 38 686 686 CYS CYS B . n B 1 39 ALA 39 687 687 ALA ALA B . n B 1 40 GLY 40 688 688 GLY GLY B . n B 1 41 CYS 41 689 689 CYS CYS B . n B 1 42 ASN 42 690 690 ASN ASN B . n B 1 43 VAL 43 691 691 VAL VAL B . n B 1 44 GLU 44 692 692 GLU GLU B . n B 1 45 TYR 45 693 693 TYR TYR B . n B 1 46 GLN 46 694 694 GLN GLN B . n B 1 47 SER 47 695 695 SER SER B . n B 1 48 CYS 48 696 696 CYS CYS B . n B 1 49 ASN 49 697 697 ASN ASN B . n B 1 50 THR 50 698 698 THR THR B . n B 1 51 ASN 51 699 699 ASN ASN B . n B 1 52 PRO 52 700 700 PRO PRO B . n B 1 53 CYS 53 701 701 CYS CYS B . n B 1 54 PRO 54 702 702 PRO PRO B . n B 1 55 GLU 55 703 703 GLU GLU B . n B 1 56 LEU 56 704 704 LEU LEU B . n B 1 57 LYS 57 705 705 LYS LYS B . n B 1 58 LYS 58 706 706 LYS LYS B . n B 1 59 THR 59 707 707 THR THR B . n B 1 60 THR 60 708 708 THR THR B . n B 1 61 PRO 61 709 709 PRO PRO B . n B 1 62 TRP 62 710 710 TRP TRP B . n B 1 63 THR 63 711 711 THR THR B . n B 1 64 PRO 64 712 712 PRO PRO B . n B 1 65 TRP 65 713 713 TRP TRP B . n B 1 66 THR 66 714 714 THR THR B . n B 1 67 PRO 67 715 715 PRO PRO B . n B 1 68 VAL 68 716 716 VAL VAL B . n B 1 69 ASN 69 717 717 ASN ASN B . n B 1 70 ILE 70 718 ? ? ? B . n B 1 71 SER 71 719 ? ? ? B . n B 1 72 ASP 72 720 ? ? ? B . n B 1 73 ASN 73 721 ? ? ? B . n B 1 74 GLY 74 722 ? ? ? B . n B 1 75 GLY 75 723 ? ? ? B . n B 1 76 HIS 76 724 724 HIS HIS B . n B 1 77 TYR 77 725 725 TYR TYR B . n B 1 78 GLU 78 726 726 GLU GLU B . n B 1 79 GLN 79 727 727 GLN GLN B . n B 1 80 ARG 80 728 728 ARG ARG B . n B 1 81 PHE 81 729 729 PHE PHE B . n B 1 82 ARG 82 730 730 ARG ARG B . n B 1 83 TYR 83 731 731 TYR TYR B . n B 1 84 THR 84 732 732 THR THR B . n B 1 85 CYS 85 733 733 CYS CYS B . n B 1 86 LYS 86 734 734 LYS LYS B . n B 1 87 ALA 87 735 735 ALA ALA B . n B 1 88 ARG 88 736 736 ARG ARG B . n B 1 89 LEU 89 737 737 LEU LEU B . n B 1 90 ALA 90 738 738 ALA ALA B . n B 1 91 ASP 91 739 739 ASP ASP B . n B 1 92 PRO 92 740 740 PRO PRO B . n B 1 93 ASN 93 741 741 ASN ASN B . n B 1 94 LEU 94 742 742 LEU LEU B . n B 1 95 LEU 95 743 743 LEU LEU B . n B 1 96 GLU 96 744 744 GLU GLU B . n B 1 97 VAL 97 745 745 VAL VAL B . n B 1 98 GLY 98 746 746 GLY GLY B . n B 1 99 ARG 99 747 747 ARG ARG B . n B 1 100 GLN 100 748 748 GLN GLN B . n B 1 101 ARG 101 749 749 ARG ARG B . n B 1 102 ILE 102 750 750 ILE ILE B . n B 1 103 GLU 103 751 751 GLU GLU B . n B 1 104 MET 104 752 752 MET MET B . n B 1 105 ARG 105 753 753 ARG ARG B . n B 1 106 TYR 106 754 754 TYR TYR B . n B 1 107 CYS 107 755 755 CYS CYS B . n B 1 108 SER 108 756 756 SER SER B . n B 1 109 SER 109 757 757 SER SER B . n B 1 110 ASP 110 758 758 ASP ASP B . n B 1 111 GLY 111 759 759 GLY GLY B . n B 1 112 THR 112 760 760 THR THR B . n B 1 113 SER 113 761 761 SER SER B . n B 1 114 GLY 114 762 762 GLY GLY B . n B 1 115 CYS 115 763 763 CYS CYS B . n B 1 116 SER 116 764 764 SER SER B . n B 1 117 THR 117 765 765 THR THR B . n B 1 118 GLY 118 766 766 GLY GLY B . n B 1 119 THR 119 767 767 THR THR B . n B 1 120 LEU 120 768 768 LEU LEU B . n B 1 121 GLU 121 769 769 GLU GLU B . n B 1 122 VAL 122 770 770 VAL VAL B . n B 1 123 LEU 123 771 771 LEU LEU B . n B 1 124 PHE 124 772 772 PHE PHE B . n B 1 125 GLN 125 773 ? ? ? B . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 664 ? CG ? A ARG 16 CG 2 1 Y 1 A ARG 664 ? CD ? A ARG 16 CD 3 1 Y 1 A ARG 664 ? NE ? A ARG 16 NE 4 1 Y 1 A ARG 664 ? CZ ? A ARG 16 CZ 5 1 Y 1 A ARG 664 ? NH1 ? A ARG 16 NH1 6 1 Y 1 A ARG 664 ? NH2 ? A ARG 16 NH2 7 1 Y 1 A ILE 679 ? CG1 ? A ILE 31 CG1 8 1 Y 1 A ILE 679 ? CG2 ? A ILE 31 CG2 9 1 Y 1 A ILE 679 ? CD1 ? A ILE 31 CD1 10 1 Y 1 A GLU 681 ? CG ? A GLU 33 CG 11 1 Y 1 A GLU 681 ? CD ? A GLU 33 CD 12 1 Y 1 A GLU 681 ? OE1 ? A GLU 33 OE1 13 1 Y 1 A GLU 681 ? OE2 ? A GLU 33 OE2 14 1 Y 1 A LYS 705 ? CG ? A LYS 57 CG 15 1 Y 1 A LYS 705 ? CD ? A LYS 57 CD 16 1 Y 1 A LYS 705 ? CE ? A LYS 57 CE 17 1 Y 1 A LYS 705 ? NZ ? A LYS 57 NZ 18 1 Y 1 A ARG 747 ? CG ? A ARG 99 CG 19 1 Y 1 A ARG 747 ? CD ? A ARG 99 CD 20 1 Y 1 A ARG 747 ? NE ? A ARG 99 NE 21 1 Y 1 A ARG 747 ? CZ ? A ARG 99 CZ 22 1 Y 1 A ARG 747 ? NH1 ? A ARG 99 NH1 23 1 Y 1 A ARG 747 ? NH2 ? A ARG 99 NH2 24 1 Y 1 A TYR 754 ? CG ? A TYR 106 CG 25 1 Y 1 A TYR 754 ? CD1 ? A TYR 106 CD1 26 1 Y 1 A TYR 754 ? CD2 ? A TYR 106 CD2 27 1 Y 1 A TYR 754 ? CE1 ? A TYR 106 CE1 28 1 Y 1 A TYR 754 ? CE2 ? A TYR 106 CE2 29 1 Y 1 A TYR 754 ? CZ ? A TYR 106 CZ 30 1 Y 1 A TYR 754 ? OH ? A TYR 106 OH 31 1 Y 1 B GLU 663 ? CG ? B GLU 15 CG 32 1 Y 1 B GLU 663 ? CD ? B GLU 15 CD 33 1 Y 1 B GLU 663 ? OE1 ? B GLU 15 OE1 34 1 Y 1 B GLU 663 ? OE2 ? B GLU 15 OE2 35 1 Y 1 B ARG 664 ? CG ? B ARG 16 CG 36 1 Y 1 B ARG 664 ? CD ? B ARG 16 CD 37 1 Y 1 B ARG 664 ? NE ? B ARG 16 NE 38 1 Y 1 B ARG 664 ? CZ ? B ARG 16 CZ 39 1 Y 1 B ARG 664 ? NH1 ? B ARG 16 NH1 40 1 Y 1 B ARG 664 ? NH2 ? B ARG 16 NH2 41 1 Y 1 B GLN 668 ? CG ? B GLN 20 CG 42 1 Y 1 B GLN 668 ? CD ? B GLN 20 CD 43 1 Y 1 B GLN 668 ? OE1 ? B GLN 20 OE1 44 1 Y 1 B GLN 668 ? NE2 ? B GLN 20 NE2 45 1 Y 1 B ASN 682 ? CG ? B ASN 34 CG 46 1 Y 1 B ASN 682 ? OD1 ? B ASN 34 OD1 47 1 Y 1 B ASN 682 ? ND2 ? B ASN 34 ND2 48 1 Y 1 B ASP 685 ? CG ? B ASP 37 CG 49 1 Y 1 B ASP 685 ? OD1 ? B ASP 37 OD1 50 1 Y 1 B ASP 685 ? OD2 ? B ASP 37 OD2 51 1 Y 1 B LYS 705 ? CG ? B LYS 57 CG 52 1 Y 1 B LYS 705 ? CD ? B LYS 57 CD 53 1 Y 1 B LYS 705 ? CE ? B LYS 57 CE 54 1 Y 1 B LYS 705 ? NZ ? B LYS 57 NZ 55 1 Y 1 B HIS 724 ? CG ? B HIS 76 CG 56 1 Y 1 B HIS 724 ? ND1 ? B HIS 76 ND1 57 1 Y 1 B HIS 724 ? CD2 ? B HIS 76 CD2 58 1 Y 1 B HIS 724 ? CE1 ? B HIS 76 CE1 59 1 Y 1 B HIS 724 ? NE2 ? B HIS 76 NE2 60 1 Y 1 B GLU 744 ? CG ? B GLU 96 CG 61 1 Y 1 B GLU 744 ? CD ? B GLU 96 CD 62 1 Y 1 B GLU 744 ? OE1 ? B GLU 96 OE1 63 1 Y 1 B GLU 744 ? OE2 ? B GLU 96 OE2 64 1 Y 1 B ARG 747 ? CG ? B ARG 99 CG 65 1 Y 1 B ARG 747 ? CD ? B ARG 99 CD 66 1 Y 1 B ARG 747 ? NE ? B ARG 99 NE 67 1 Y 1 B ARG 747 ? CZ ? B ARG 99 CZ 68 1 Y 1 B ARG 747 ? NH1 ? B ARG 99 NH1 69 1 Y 1 B ARG 747 ? NH2 ? B ARG 99 NH2 70 1 Y 1 B SER 764 ? OG ? B SER 116 OG # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? 1.0.5 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19rc5_4047 2 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.9.6 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20200417 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 6 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 99.100 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8CKM _cell.details ? _cell.formula_units_Z ? _cell.length_a 104.110 _cell.length_a_esd ? _cell.length_b 27.650 _cell.length_b_esd ? _cell.length_c 92.240 _cell.length_c_esd ? _cell.volume 262183.932 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8CKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8CKM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.3 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '38 % PEG 200, 0.1 M sodium citrate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-02-12 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator M _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9999 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 73.790 _reflns.entry_id 8CKM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.72 _reflns.d_resolution_low 51.41 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7316 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.136 _reflns.pdbx_Rpim_I_all 0.073 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.114 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.72 _reflns_shell.d_res_low 2.77 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 382 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 6.373 _reflns_shell.pdbx_Rpim_I_all 3.725 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.467 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 5.129 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 146.20 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8CKM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.72 _refine.ls_d_res_low 51.40 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7192 _refine.ls_number_reflns_R_free 334 _refine.ls_number_reflns_R_work 6858 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.10 _refine.ls_percent_reflns_R_free 4.64 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2900 _refine.ls_R_factor_R_free 0.3311 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2878 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 46.7273 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5140 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.72 _refine_hist.d_res_low 51.40 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1571 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1571 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0025 ? 1615 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.5060 ? 2203 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0361 ? 227 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0040 ? 290 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 10.9383 ? 573 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.72 3.43 . . 157 3329 96.43 . . . . 0.4324 . . . . . . . . . . . 0.4491 'X-RAY DIFFRACTION' 3.43 51.40 . . 177 3529 99.73 . . . . 0.2609 . . . . . . . . . . . 0.3095 # _struct.entry_id 8CKM _struct.title 'Semaphorin-5A TSR 3-4 domains' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8CKM _struct_keywords.text 'semaphorin, cell signalling, axon guidance cue, glycosaminoglycan binding protein, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SEM5A_HUMAN _struct_ref.pdbx_db_accession Q13591 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQRFRY TCKARLADPNLLEVGRQRIEMRYCSSDGTSGCSTDGL ; _struct_ref.pdbx_align_begin 652 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8CKM A 4 ? 120 ? Q13591 652 ? 768 ? 652 768 2 1 8CKM B 4 ? 120 ? Q13591 652 ? 768 ? 652 768 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8CKM GLU A 1 ? UNP Q13591 ? ? 'expression tag' 649 1 1 8CKM THR A 2 ? UNP Q13591 ? ? 'expression tag' 650 2 1 8CKM GLY A 3 ? UNP Q13591 ? ? 'expression tag' 651 3 1 8CKM GLY A 118 ? UNP Q13591 ASP 766 conflict 766 4 1 8CKM THR A 119 ? UNP Q13591 GLY 767 conflict 767 5 1 8CKM GLU A 121 ? UNP Q13591 ? ? 'expression tag' 769 6 1 8CKM VAL A 122 ? UNP Q13591 ? ? 'expression tag' 770 7 1 8CKM LEU A 123 ? UNP Q13591 ? ? 'expression tag' 771 8 1 8CKM PHE A 124 ? UNP Q13591 ? ? 'expression tag' 772 9 1 8CKM GLN A 125 ? UNP Q13591 ? ? 'expression tag' 773 10 2 8CKM GLU B 1 ? UNP Q13591 ? ? 'expression tag' 649 11 2 8CKM THR B 2 ? UNP Q13591 ? ? 'expression tag' 650 12 2 8CKM GLY B 3 ? UNP Q13591 ? ? 'expression tag' 651 13 2 8CKM GLY B 118 ? UNP Q13591 ASP 766 conflict 766 14 2 8CKM THR B 119 ? UNP Q13591 GLY 767 conflict 767 15 2 8CKM GLU B 121 ? UNP Q13591 ? ? 'expression tag' 769 16 2 8CKM VAL B 122 ? UNP Q13591 ? ? 'expression tag' 770 17 2 8CKM LEU B 123 ? UNP Q13591 ? ? 'expression tag' 771 18 2 8CKM PHE B 124 ? UNP Q13591 ? ? 'expression tag' 772 19 2 8CKM GLN B 125 ? UNP Q13591 ? ? 'expression tag' 773 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4460 ? 1 MORE -36 ? 1 'SSA (A^2)' 13060 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ;S-SAD was used for phasing an isomorphous crystal structure providing experimental evidence of sulfur atoms in Cys and Met residues ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 91 ? ASN A 93 ? ASP A 739 ASN A 741 5 ? 3 HELX_P HELX_P2 AA2 ASP B 91 ? ASN B 93 ? ASP B 739 ASN B 741 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 48 SG ? ? A CYS 665 A CYS 696 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 669 A CYS 701 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf3 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 680 A CYS 686 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf4 disulf ? ? A CYS 41 SG ? ? ? 1_555 B CYS 41 SG ? ? A CYS 689 B CYS 689 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf5 disulf ? ? A CYS 85 SG ? ? ? 1_555 B CYS 85 SG ? ? A CYS 733 B CYS 733 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf6 disulf ? ? B CYS 17 SG ? ? ? 1_555 B CYS 48 SG ? ? B CYS 665 B CYS 696 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf7 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 53 SG ? ? B CYS 669 B CYS 701 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf8 disulf ? ? B CYS 32 SG ? ? ? 1_555 B CYS 38 SG ? ? B CYS 680 B CYS 686 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf9 disulf ? ? B CYS 107 SG ? ? ? 1_555 B CYS 115 SG ? ? B CYS 755 B CYS 763 1_555 ? ? ? ? ? ? ? 2.030 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 24 ? ARG A 29 ? GLY A 672 ARG A 677 AA1 2 VAL A 43 ? CYS A 48 ? VAL A 691 CYS A 696 AA2 1 GLU A 55 ? THR A 59 ? GLU A 703 THR A 707 AA2 2 THR A 84 ? ARG A 88 ? THR A 732 ARG A 736 AA2 3 LEU B 95 ? VAL B 97 ? LEU B 743 VAL B 745 AA3 1 THR A 66 ? PRO A 67 ? THR A 714 PRO A 715 AA3 2 TYR A 77 ? ARG A 82 ? TYR A 725 ARG A 730 AA3 3 ARG B 101 ? TYR B 106 ? ARG B 749 TYR B 754 AA4 1 LEU A 95 ? VAL A 97 ? LEU A 743 VAL A 745 AA4 2 THR B 84 ? ARG B 88 ? THR B 732 ARG B 736 AA4 3 GLU B 55 ? THR B 59 ? GLU B 703 THR B 707 AA5 1 ARG A 101 ? TYR A 106 ? ARG A 749 TYR A 754 AA5 2 TYR B 77 ? ARG B 82 ? TYR B 725 ARG B 730 AA5 3 THR B 66 ? PRO B 67 ? THR B 714 PRO B 715 AA6 1 GLY B 24 ? ARG B 29 ? GLY B 672 ARG B 677 AA6 2 VAL B 43 ? CYS B 48 ? VAL B 691 CYS B 696 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 26 ? N GLN A 674 O GLN A 46 ? O GLN A 694 AA2 1 2 N LYS A 58 ? N LYS A 706 O CYS A 85 ? O CYS A 733 AA2 2 3 N LYS A 86 ? N LYS A 734 O GLU B 96 ? O GLU B 744 AA3 1 2 N THR A 66 ? N THR A 714 O GLN A 79 ? O GLN A 727 AA3 2 3 N ARG A 82 ? N ARG A 730 O ARG B 101 ? O ARG B 749 AA4 1 2 N GLU A 96 ? N GLU A 744 O LYS B 86 ? O LYS B 734 AA4 2 3 O CYS B 85 ? O CYS B 733 N LYS B 58 ? N LYS B 706 AA5 1 2 N ARG A 105 ? N ARG A 753 O GLU B 78 ? O GLU B 726 AA5 2 3 O GLN B 79 ? O GLN B 727 N THR B 66 ? N THR B 714 AA6 1 2 N ARG B 28 ? N ARG B 676 O GLU B 44 ? O GLU B 692 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 663 ? ? -82.92 -153.43 2 1 GLU B 663 ? ? 59.12 -133.94 3 1 ALA B 687 ? ? -85.48 36.37 4 1 SER B 756 ? ? 65.75 -162.52 5 1 THR B 760 ? ? -134.01 -86.02 6 1 SER B 761 ? ? 51.73 -108.48 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 14.615 -23.615 51.257 2.10411459289 2.56448282411 1.58468459015 0.561571297271 0.378356924696 -0.460044755403 2.17023334496 1.40105218561 1.35268220083 1.68157341664 0.577866173169 0.575792489048 -1.78759635098 4.58101574639 -1.17979399466 1.00740627635 0.672664311955 3.33271304912 -1.43992036316 -3.13121625229 -0.0242804537818 'X-RAY DIFFRACTION' 2 ? refined 9.360 -20.951 57.408 1.76674688994 1.86401080339 1.10162336576 0.450613699454 -0.142772960744 0.0141045746975 5.00089605728 4.2999015629 8.54167181968 -0.473242463343 0.6166092456 4.66563270263 -0.644935971905 1.1585258497 -1.18273931305 -1.30192043601 -0.0575648798594 0.140456114771 -0.318202425039 0.881129945933 0.12763154484 'X-RAY DIFFRACTION' 3 ? refined 2.461 10.759 93.998 0.778828520155 1.16701814232 1.26380574561 0.0651217738811 0.0585519702421 0.12598173685 6.05773845909 3.71548738987 4.60306057377 0.506960568762 0.392894634399 4.14982518935 0.023960437953 -1.04283295453 0.666599520139 -0.185666866299 0.775388011467 0.231221610911 -0.06603697081 -0.218056769628 -0.762758143461 'X-RAY DIFFRACTION' 4 ? refined 3.596 -0.782 85.680 0.828335609735 1.74028686663 1.33619833639 0.00238203629934 0.0530859380592 0.470917502235 9.14966770846 3.78920865003 6.6292651368 -2.95791598439 -0.944444762119 4.46691380817 -2.3315146268 2.10660311145 0.568603530331 1.22968342119 -0.251514254568 2.49053135419 -0.594995494217 -1.2955474193 4.78008193355 'X-RAY DIFFRACTION' 5 ? refined -5.184 6.078 84.223 0.932105108289 0.926463503421 0.91372200174 0.257122645926 0.088951954901 0.257436770708 6.38882101835 4.23948913359 3.92150575599 -1.47755015374 -0.120687165932 7.17360415975 0.315863886003 -0.725659774875 -0.427162893496 2.43765937162 0.514112557379 0.323038975526 0.268934034715 0.267723288816 -2.06509747847 'X-RAY DIFFRACTION' 6 ? refined -5.622 -33.679 54.011 2.01923109755 1.20232976973 1.49943085026 0.043610461877 0.331496609745 -0.124511041833 1.91835120184 3.23393470403 6.43620230918 0.481768285075 0.503822599761 0.500567219304 -0.537099928266 -1.56453906933 2.6911086503 -0.829922937122 -0.8207702912 3.40918269129 1.30241333549 1.22535743411 -1.28626810581 'X-RAY DIFFRACTION' 7 ? refined -2.089 -25.234 58.319 2.17322122783 1.33054136776 1.16566814771 0.382986737307 0.0575625092053 -0.0240028873727 0.466229231103 0.470603498982 -0.301676041868 -2.1383326635 0.19243469174 0.563024861142 0.480094442366 0.190151293063 -0.0845322639201 0.197278729368 -0.362325942859 -1.17184978874 -0.281623942216 1.05230049774 1.15491000147 'X-RAY DIFFRACTION' 8 ? refined -9.157 8.011 93.985 0.680464444398 0.95039340609 1.65649123994 -0.0256849108574 0.10625599724 0.19327296979 8.04264794624 6.195471622 5.5386607164 -1.29544013959 -0.875106986767 -0.24821040436 -0.271650433298 -0.299084302952 -0.223421781173 -0.157334779403 1.94928434491 0.154338786923 0.457524620574 -0.172633694333 0.844389056302 'X-RAY DIFFRACTION' 9 ? refined -1.042 -0.150 86.124 0.898481019367 1.45630783555 0.987562051675 0.0938579981446 0.2204530438 0.352519944824 2.66577561915 6.06892747021 8.84428422789 -0.48559761883 0.640493869192 4.05187735449 0.0426075302823 -0.190578191463 0.354273538526 0.573406570453 0.457296573452 0.14635287701 -0.0101895841289 0.79663432779 0.161268822065 'X-RAY DIFFRACTION' 10 ? refined 5.455 23.202 104.492 2.18360160923 1.35004512356 3.42540302031 -0.324685503753 -0.508092329413 -0.535643193754 0.590786710428 3.5841278717 1.91542734505 0.825191055317 1.80977846569 -1.22681746174 -0.941704911749 -3.30626738343 -0.38451914536 -1.42006057473 3.46414713904 2.6355335634 2.14513514469 -5.77523912567 0.633161120982 'X-RAY DIFFRACTION' 11 ? refined 9.878 36.878 100.765 1.03839096961 1.60650972272 1.18634438368 0.0730447065443 -0.0370150933704 -0.058379816268 4.45100557161 3.16443042891 4.82262937462 -1.86196423447 -4.3386071335 0.475752813222 -0.253326372114 1.05770213728 -0.215636943182 -0.818006279842 -0.593879857578 -1.21260672061 -1.38199297239 0.550911361896 1.17930826614 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 656 A 663 '( CHAIN A AND RESID 656:663 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 664 A 702 '( CHAIN A AND RESID 664:702 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 703 A 729 '( CHAIN A AND RESID 703:729 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 730 A 736 '( CHAIN A AND RESID 730:736 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 737 A 755 '( CHAIN A AND RESID 737:755 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 655 B 663 '( CHAIN B AND RESID 655:663 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 664 B 702 '( CHAIN B AND RESID 664:702 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 703 B 728 '( CHAIN B AND RESID 703:728 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 729 B 752 '( CHAIN B AND RESID 729:752 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 753 B 764 '( CHAIN B AND RESID 753:764 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 B 765 B 772 '( CHAIN B AND RESID 765:772 )' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 649 ? A GLU 1 2 1 Y 1 A THR 650 ? A THR 2 3 1 Y 1 A GLY 651 ? A GLY 3 4 1 Y 1 A PRO 652 ? A PRO 4 5 1 Y 1 A HIS 653 ? A HIS 5 6 1 Y 1 A MET 654 ? A MET 6 7 1 Y 1 A PHE 655 ? A PHE 7 8 1 Y 1 A ASN 717 ? A ASN 69 9 1 Y 1 A ILE 718 ? A ILE 70 10 1 Y 1 A SER 719 ? A SER 71 11 1 Y 1 A ASP 720 ? A ASP 72 12 1 Y 1 A ASN 721 ? A ASN 73 13 1 Y 1 A GLY 722 ? A GLY 74 14 1 Y 1 A GLY 723 ? A GLY 75 15 1 Y 1 A SER 756 ? A SER 108 16 1 Y 1 A SER 757 ? A SER 109 17 1 Y 1 A ASP 758 ? A ASP 110 18 1 Y 1 A GLY 759 ? A GLY 111 19 1 Y 1 A THR 760 ? A THR 112 20 1 Y 1 A SER 761 ? A SER 113 21 1 Y 1 A GLY 762 ? A GLY 114 22 1 Y 1 A CYS 763 ? A CYS 115 23 1 Y 1 A SER 764 ? A SER 116 24 1 Y 1 A THR 765 ? A THR 117 25 1 Y 1 A GLY 766 ? A GLY 118 26 1 Y 1 A THR 767 ? A THR 119 27 1 Y 1 A LEU 768 ? A LEU 120 28 1 Y 1 A GLU 769 ? A GLU 121 29 1 Y 1 A VAL 770 ? A VAL 122 30 1 Y 1 A LEU 771 ? A LEU 123 31 1 Y 1 A PHE 772 ? A PHE 124 32 1 Y 1 A GLN 773 ? A GLN 125 33 1 Y 1 B GLU 649 ? B GLU 1 34 1 Y 1 B THR 650 ? B THR 2 35 1 Y 1 B GLY 651 ? B GLY 3 36 1 Y 1 B PRO 652 ? B PRO 4 37 1 Y 1 B HIS 653 ? B HIS 5 38 1 Y 1 B MET 654 ? B MET 6 39 1 Y 1 B ILE 718 ? B ILE 70 40 1 Y 1 B SER 719 ? B SER 71 41 1 Y 1 B ASP 720 ? B ASP 72 42 1 Y 1 B ASN 721 ? B ASN 73 43 1 Y 1 B GLY 722 ? B GLY 74 44 1 Y 1 B GLY 723 ? B GLY 75 45 1 Y 1 B GLN 773 ? B GLN 125 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _pdbx_audit_support.funding_organization 'Medical Research Council (MRC, United Kingdom)' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number MR/T000503/1 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8CKG _pdbx_initial_refinement_model.details '8CKG contains the same protein in complex with sulfate' # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 8CKM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009605 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001539 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.036166 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010979 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_