HEADER TRANSPORT PROTEIN 16-FEB-23 8CKO TITLE PBP ACCA FROM A.TUMEFACIENS C58 IN COMPLEX WITH AGROCINOPINE C-LIKE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-521; COMPND 5 SYNONYM: AGROCINOPINE UTILIZATION PERIPLASMIC BINDING PROTEIN ACCA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 GENE: ACCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PERIPLASMIC BINDING PROTEIN, SOLUTE BINDING PROTEIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX REVDAT 2 07-FEB-24 8CKO 1 JRNL REVDAT 1 24-JAN-24 8CKO 0 JRNL AUTH S.MORERA,A.VIGOUROUX,M.AUMONT-NICAISE,M.AHMAR,T.MEYER, JRNL AUTH 2 A.EL SAHILI,G.DEICSICS,A.GONZALEZ-MULA,S.LI,J.DORE,S.SIRIGU, JRNL AUTH 3 P.LEGRAND,C.PENOT,F.ANDRE,D.FAURE,L.SOULERE,Y.QUENEAU,L.VIAL JRNL TITL A HIGHLY CONSERVED LIGAND-BINDING SITE FOR ACCA TRANSPORTERS JRNL TITL 2 OF ANTIBIOTIC AND QUORUM-SENSING REGULATOR IN AGROBACTERIUM JRNL TITL 3 LEADS TO A DIFFERENT SPECIFICITY. JRNL REF BIOCHEM.J. V. 481 93 2024 JRNL REFN ESSN 1470-8728 JRNL PMID 38058289 JRNL DOI 10.1042/BCJ20230273 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (21-NOV-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.5 REMARK 3 NUMBER OF REFLECTIONS : 74582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 3841 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.93 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1438 REMARK 3 BIN R VALUE (WORKING SET) : 0.2571 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 452 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42060 REMARK 3 B22 (A**2) : 0.76730 REMARK 3 B33 (A**2) : 0.65330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.170 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.072 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.075 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.081 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.073 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8082 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 14604 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2366 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1231 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8082 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 528 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7581 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 5.12 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|30 - A|240 } REMARK 3 ORIGIN FOR THE GROUP (A): 31.1947 20.4116 153.6090 REMARK 3 T TENSOR REMARK 3 T11: -0.0489 T22: 0.0415 REMARK 3 T33: -0.0085 T12: -0.0215 REMARK 3 T13: -0.0441 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 1.5805 L22: 1.1406 REMARK 3 L33: 0.8076 L12: 1.1636 REMARK 3 L13: -0.4152 L23: 0.2197 REMARK 3 S TENSOR REMARK 3 S11: 0.0998 S12: -0.2514 S13: -0.2161 REMARK 3 S21: 0.1330 S22: -0.1515 S23: -0.1773 REMARK 3 S31: -0.0248 S32: 0.2127 S33: 0.0517 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|241 - A|521 A|601 - A|601 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.4780 7.7982 137.7930 REMARK 3 T TENSOR REMARK 3 T11: -0.0412 T22: -0.0355 REMARK 3 T33: 0.0502 T12: 0.0042 REMARK 3 T13: 0.0239 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.8797 L22: 0.4394 REMARK 3 L33: 0.8431 L12: 0.2582 REMARK 3 L13: -0.0104 L23: 0.2524 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 0.0311 S13: -0.2065 REMARK 3 S21: 0.0278 S22: -0.0638 S23: -0.0342 REMARK 3 S31: 0.0637 S32: 0.0030 S33: 0.0816 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|3 - C|3 A|701 - A|1152 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.2720 14.7004 143.2160 REMARK 3 T TENSOR REMARK 3 T11: -0.0505 T22: -0.0246 REMARK 3 T33: 0.0262 T12: 0.0064 REMARK 3 T13: 0.0047 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.8874 L22: 0.6699 REMARK 3 L33: 0.7424 L12: 0.4886 REMARK 3 L13: 0.0360 L23: 0.3519 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.0492 S13: -0.1632 REMARK 3 S21: 0.0488 S22: -0.0638 S23: -0.0655 REMARK 3 S31: 0.0236 S32: 0.0652 S33: 0.0716 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE FULLY REFINED REMARK 3 WITH FULL OCCUPANCY AT NUCLEAR POSITION. REMARK 4 REMARK 4 8CKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74582 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 78.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.5 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.05900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NH4 ACETATE, CITRATE NA, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.47450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.62000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.34000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.47450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.62000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.34000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.47450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.34000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.47450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.62000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1126 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ISOMER OF AGROCINOPINE C. AGROCINOPINE C IS A MEMBER OF THE CLASS REMARK 400 OF AGROCINOPINES THAT CONSISTS OF SUCROSE AND D-GLUCOSE JOINED VIA REMARK 400 A PHOSPHODIESTER LINKAGE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 29 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 143 O HOH A 704 1.50 REMARK 500 O HOH A 701 O HOH A 808 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 179.79 176.71 REMARK 500 ALA A 87 -103.98 -137.88 REMARK 500 ASP A 215 -60.18 -135.16 REMARK 500 ASN A 349 89.56 -154.74 REMARK 500 TRP A 414 -80.73 -120.10 REMARK 500 THR A 425 49.99 -83.56 REMARK 500 ASP A 426 148.48 -170.41 REMARK 500 LEU A 489 -63.16 -98.62 REMARK 500 SER A 508 46.90 -83.50 REMARK 500 ASN A 517 39.81 -150.70 REMARK 500 LEU A 518 116.53 -160.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 369 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1151 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1152 DISTANCE = 6.22 ANGSTROMS REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE NUTRIENT REMARK 630 MOLECULE NAME: 2-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 BNX A 601 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: PHOSPHODIESTER OF D-BETA-GLUCOSE (BNX) AND SUCROSE (GLC- REMARK 630 FRU). REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE NUTRIENT REMARK 630 MOLECULE NAME: 2-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 ALX A 602 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: PHOSPHODIESTER OF D-ALPHA-GLUCOSE (ALX) AND SUCROSE (GLC- REMARK 630 FRU). DBREF 8CKO A 30 521 UNP Q52012 Q52012_AGRFC 30 521 SEQADV 8CKO MET A 29 UNP Q52012 INITIATING METHIONINE SEQADV 8CKO HIS A 522 UNP Q52012 EXPRESSION TAG SEQADV 8CKO HIS A 523 UNP Q52012 EXPRESSION TAG SEQADV 8CKO HIS A 524 UNP Q52012 EXPRESSION TAG SEQADV 8CKO HIS A 525 UNP Q52012 EXPRESSION TAG SEQADV 8CKO HIS A 526 UNP Q52012 EXPRESSION TAG SEQADV 8CKO HIS A 527 UNP Q52012 EXPRESSION TAG SEQRES 1 A 499 MET GLN GLU ARG ARG ALA LEU ARG LEU GLY VAL ASN GLY SEQRES 2 A 499 LEU PRO ASN SER LEU GLU PRO VAL ASN ALA ILE SER ASN SEQRES 3 A 499 VAL GLY PRO ARG ILE VAL ASN GLN ILE PHE ASP THR LEU SEQRES 4 A 499 ILE ALA ARG ASP PHE PHE ALA LYS GLY ALA PRO GLY ASN SEQRES 5 A 499 ALA ILE ASP LEU VAL PRO ALA LEU ALA GLU SER TRP GLU SEQRES 6 A 499 ARG ILE ASP GLU LYS SER VAL ARG PHE LYS LEU ARG GLN SEQRES 7 A 499 LYS VAL MET PHE HIS ASP GLY VAL GLU LEU THR ALA ASP SEQRES 8 A 499 ASP VAL ALA TYR THR PHE SER SER GLU ARG LEU TRP GLY SEQRES 9 A 499 PRO GLU ALA ILE LYS LYS ILE PRO LEU GLY LYS SER TYR SEQRES 10 A 499 SER LEU ASP PHE ASP GLU PRO VAL VAL GLU ASP LYS TYR SEQRES 11 A 499 THR VAL THR LEU ARG THR LYS THR PRO SER TYR LEU ILE SEQRES 12 A 499 GLU THR PHE VAL ALA SER TRP MET SER ARG ILE VAL PRO SEQRES 13 A 499 LYS GLU TYR TYR LYS LYS LEU GLY ALA VAL ASP PHE GLY SEQRES 14 A 499 ASN LYS PRO VAL GLY THR GLY PRO TYR LYS PHE VAL GLU SEQRES 15 A 499 PHE VAL ALA GLY ASP ARG VAL VAL LEU GLU ALA ASN ASP SEQRES 16 A 499 ALA TYR TRP GLY PRO LYS PRO THR ALA SER LYS ILE THR SEQRES 17 A 499 TYR GLN ILE VAL ALA GLU PRO ALA THR ARG VAL ALA GLY SEQRES 18 A 499 LEU ILE SER GLY GLU TYR ASP ILE ILE THR THR LEU THR SEQRES 19 A 499 PRO ASP ASP ILE GLN LEU ILE ASN SER TYR PRO ASP LEU SEQRES 20 A 499 GLU THR ARG GLY THR LEU ILE GLU ASN PHE HIS MET PHE SEQRES 21 A 499 THR PHE ASN MET ASN GLN GLU VAL PHE LYS ASP LYS LYS SEQRES 22 A 499 LEU ARG ARG ALA LEU ALA LEU ALA VAL ASN ARG PRO ILE SEQRES 23 A 499 MET VAL GLU ALA LEU TRP LYS LYS GLN ALA SER ILE PRO SEQRES 24 A 499 ALA GLY PHE ASN PHE PRO ASN TYR GLY GLU THR PHE ASP SEQRES 25 A 499 PRO LYS ARG LYS ALA MET GLU TYR ASN VAL GLU GLU ALA SEQRES 26 A 499 LYS ARG LEU VAL LYS GLU SER GLY TYR ASP GLY THR PRO SEQRES 27 A 499 ILE THR TYR HIS THR MET GLY ASN TYR TYR ALA ASN ALA SEQRES 28 A 499 MET PRO ALA LEU MET MET MET ILE GLU MET TRP LYS GLN SEQRES 29 A 499 ILE GLY VAL ASN VAL VAL MET LYS THR TYR ALA PRO GLY SEQRES 30 A 499 SER PHE PRO PRO ASP ASN GLN THR TRP MET ARG ASN TRP SEQRES 31 A 499 SER ASN GLY GLN TRP MET THR ASP ALA TYR ALA THR ILE SEQRES 32 A 499 VAL PRO GLU PHE GLY PRO ASN GLY GLN VAL GLN LYS ARG SEQRES 33 A 499 TRP GLY TRP LYS ALA PRO ALA GLU PHE ASN GLU LEU CYS SEQRES 34 A 499 GLN LYS VAL THR VAL LEU PRO ASN GLY LYS GLU ARG PHE SEQRES 35 A 499 ASP ALA TYR ASN ARG MET ARG ASP ILE PHE GLU GLU GLU SEQRES 36 A 499 ALA PRO ALA VAL ILE LEU TYR GLN PRO TYR ASP VAL TYR SEQRES 37 A 499 ALA ALA ARG LYS ASP VAL HIS TRP LYS PRO VAL SER PHE SEQRES 38 A 499 GLU MET MET GLU PHE ARG ASN ASN LEU SER PHE GLY HIS SEQRES 39 A 499 HIS HIS HIS HIS HIS HET GLC B 1 20 HET FRU B 2 23 HET GLC C 1 20 HET FRU C 2 23 HET BNX A 601 26 HET ALX A 602 26 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM BNX 2-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM ALX 2-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN BNX 2-O-PHOSPHONO-BETA-D-GLUCOSE; 2-O-PHOSPHONO-D-GLUCOSE; HETSYN 2 BNX 2-O-PHOSPHONO-GLUCOSE HETSYN ALX 2-O-PHOSPHONO-ALPHA-D-GLUCOSE; 2-O-PHOSPHONO-D-GLUCOSE; HETSYN 2 ALX 2-O-PHOSPHONO-GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 FRU 2(C6 H12 O6) FORMUL 4 BNX C6 H13 O9 P FORMUL 5 ALX C6 H13 O9 P FORMUL 6 HOH *452(H2 O) HELIX 1 AA1 GLY A 56 PHE A 64 1 9 HELIX 2 AA2 PHE A 73 ALA A 77 5 5 HELIX 3 AA3 THR A 117 PHE A 125 1 9 HELIX 4 AA4 GLY A 132 ILE A 136 5 5 HELIX 5 AA5 LEU A 141 SER A 146 1 6 HELIX 6 AA6 LEU A 170 ALA A 176 1 7 HELIX 7 AA7 PRO A 184 LYS A 199 1 16 HELIX 8 AA8 GLU A 242 SER A 252 1 11 HELIX 9 AA9 THR A 262 ASP A 264 5 3 HELIX 10 AB1 ASP A 265 TYR A 272 1 8 HELIX 11 AB2 GLN A 294 LYS A 298 5 5 HELIX 12 AB3 ASP A 299 ALA A 309 1 11 HELIX 13 AB4 ASN A 311 LYS A 321 1 11 HELIX 14 AB5 PHE A 332 PHE A 339 5 8 HELIX 15 AB6 ASN A 349 SER A 360 1 12 HELIX 16 AB7 ASN A 378 ILE A 393 1 16 HELIX 17 AB8 PRO A 409 THR A 413 5 5 HELIX 18 AB9 ALA A 427 GLY A 436 1 10 HELIX 19 AC1 GLY A 439 ARG A 444 1 6 HELIX 20 AC2 PRO A 450 LEU A 463 1 14 HELIX 21 AC3 GLY A 466 ALA A 484 1 19 SHEET 1 AA1 7 TYR A 206 VAL A 212 0 SHEET 2 AA1 7 ARG A 216 ALA A 221 -1 O GLU A 220 N LYS A 207 SHEET 3 AA1 7 LYS A 234 ILE A 239 -1 O TYR A 237 N VAL A 217 SHEET 4 AA1 7 LEU A 35 VAL A 39 1 N LEU A 35 O LYS A 234 SHEET 5 AA1 7 ILE A 257 LEU A 261 1 O THR A 259 N GLY A 38 SHEET 6 AA1 7 TYR A 493 ARG A 499 -1 O ALA A 497 N ILE A 258 SHEET 7 AA1 7 LEU A 275 LEU A 281 -1 N ARG A 278 O TYR A 496 SHEET 1 AA2 2 ILE A 68 ARG A 70 0 SHEET 2 AA2 2 LEU A 84 PRO A 86 -1 O VAL A 85 N ALA A 69 SHEET 1 AA3 4 ALA A 89 ASP A 96 0 SHEET 2 AA3 4 SER A 99 LEU A 104 -1 O ARG A 101 N GLU A 93 SHEET 3 AA3 4 THR A 159 ARG A 163 -1 O VAL A 160 N PHE A 102 SHEET 4 AA3 4 VAL A 153 ASP A 156 -1 N VAL A 153 O THR A 161 SHEET 1 AA4 5 VAL A 397 THR A 401 0 SHEET 2 AA4 5 ILE A 367 THR A 371 1 N TYR A 369 O LYS A 400 SHEET 3 AA4 5 MET A 415 GLY A 421 1 O MET A 415 N HIS A 370 SHEET 4 AA4 5 ASN A 284 PHE A 290 -1 N THR A 289 O ARG A 416 SHEET 5 AA4 5 ALA A 486 TYR A 490 -1 O VAL A 487 N PHE A 288 SHEET 1 AA5 2 VAL A 502 HIS A 503 0 SHEET 2 AA5 2 SER A 519 PHE A 520 -1 O SER A 519 N HIS A 503 LINK PAMBBNX A 601 O3 BGLC C 1 1555 1555 1.53 LINK PAMAALX A 602 O3 AGLC B 1 1555 1555 1.53 LINK C1 AGLC B 1 O2 AFRU B 2 1555 1555 1.41 LINK C1 BGLC C 1 O2 BFRU C 2 1555 1555 1.41 CISPEP 1 ALA A 429 THR A 430 0 1.57 CRYST1 78.680 108.949 113.240 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012710 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008831 0.00000