data_8CKY # _entry.id 8CKY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.369 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8CKY pdb_00008cky 10.2210/pdb8cky/pdb WWPDB D_1292128314 ? ? EMDB EMD-16706 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'HIV-1 mature capsid hexamer from CA-IP6 CLPs, bound to Nup153 peptide' _pdbx_database_related.db_id EMD-16706 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8CKY _pdbx_database_status.recvd_initial_deposition_date 2023-02-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stacey, J.C.V.' 1 0000-0003-2484-8738 'Briggs, J.A.G.' 2 0000-0003-3990-6910 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 120 _citation.language ? _citation.page_first e2220557120 _citation.page_last e2220557120 _citation.title 'Two structural switches in HIV-1 capsid regulate capsid curvature and host factor binding.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2220557120 _citation.pdbx_database_id_PubMed 37040417 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stacey, J.C.V.' 1 ? primary 'Tan, A.' 2 0000-0002-4046-7380 primary 'Lu, J.M.' 3 0000-0002-3972-8854 primary 'James, L.C.' 4 ? primary 'Dick, R.A.' 5 0000-0003-3693-2531 primary 'Briggs, J.A.G.' 6 0000-0003-3990-6910 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8CKY _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8CKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Gag polyprotein' 25761.623 1 ? ? ? ? 2 polymer syn 'Nuclear pore complex protein Nup153' 1687.721 1 ? ? 'UNP residues 1407-1423' ? # _entity_name_com.entity_id 2 _entity_name_com.name '153 kDa nucleoporin,Nucleoporin Nup153' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAE WDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKE PFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL ; ;MPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAE WDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKE PFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL ; A ? 2 'polypeptide(L)' no no TNNSPSGVFTFGANSST TNNSPSGVFTFGANSST B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 ILE n 1 4 VAL n 1 5 GLN n 1 6 ASN n 1 7 LEU n 1 8 GLN n 1 9 GLY n 1 10 GLN n 1 11 MET n 1 12 VAL n 1 13 HIS n 1 14 GLN n 1 15 ALA n 1 16 ILE n 1 17 SER n 1 18 PRO n 1 19 ARG n 1 20 THR n 1 21 LEU n 1 22 ASN n 1 23 ALA n 1 24 TRP n 1 25 VAL n 1 26 LYS n 1 27 VAL n 1 28 VAL n 1 29 GLU n 1 30 GLU n 1 31 LYS n 1 32 ALA n 1 33 PHE n 1 34 SER n 1 35 PRO n 1 36 GLU n 1 37 VAL n 1 38 ILE n 1 39 PRO n 1 40 MET n 1 41 PHE n 1 42 SER n 1 43 ALA n 1 44 LEU n 1 45 SER n 1 46 GLU n 1 47 GLY n 1 48 ALA n 1 49 THR n 1 50 PRO n 1 51 GLN n 1 52 ASP n 1 53 LEU n 1 54 ASN n 1 55 THR n 1 56 MET n 1 57 LEU n 1 58 ASN n 1 59 THR n 1 60 VAL n 1 61 GLY n 1 62 GLY n 1 63 HIS n 1 64 GLN n 1 65 ALA n 1 66 ALA n 1 67 MET n 1 68 GLN n 1 69 MET n 1 70 LEU n 1 71 LYS n 1 72 GLU n 1 73 THR n 1 74 ILE n 1 75 ASN n 1 76 GLU n 1 77 GLU n 1 78 ALA n 1 79 ALA n 1 80 GLU n 1 81 TRP n 1 82 ASP n 1 83 ARG n 1 84 LEU n 1 85 HIS n 1 86 PRO n 1 87 VAL n 1 88 HIS n 1 89 ALA n 1 90 GLY n 1 91 PRO n 1 92 ILE n 1 93 ALA n 1 94 PRO n 1 95 GLY n 1 96 GLN n 1 97 MET n 1 98 ARG n 1 99 GLU n 1 100 PRO n 1 101 ARG n 1 102 GLY n 1 103 SER n 1 104 ASP n 1 105 ILE n 1 106 ALA n 1 107 GLY n 1 108 THR n 1 109 THR n 1 110 SER n 1 111 THR n 1 112 LEU n 1 113 GLN n 1 114 GLU n 1 115 GLN n 1 116 ILE n 1 117 GLY n 1 118 TRP n 1 119 MET n 1 120 THR n 1 121 HIS n 1 122 ASN n 1 123 PRO n 1 124 PRO n 1 125 ILE n 1 126 PRO n 1 127 VAL n 1 128 GLY n 1 129 GLU n 1 130 ILE n 1 131 TYR n 1 132 LYS n 1 133 ARG n 1 134 TRP n 1 135 ILE n 1 136 ILE n 1 137 LEU n 1 138 GLY n 1 139 LEU n 1 140 ASN n 1 141 LYS n 1 142 ILE n 1 143 VAL n 1 144 ARG n 1 145 MET n 1 146 TYR n 1 147 SER n 1 148 PRO n 1 149 THR n 1 150 SER n 1 151 ILE n 1 152 LEU n 1 153 ASP n 1 154 ILE n 1 155 ARG n 1 156 GLN n 1 157 GLY n 1 158 PRO n 1 159 LYS n 1 160 GLU n 1 161 PRO n 1 162 PHE n 1 163 ARG n 1 164 ASP n 1 165 TYR n 1 166 VAL n 1 167 ASP n 1 168 ARG n 1 169 PHE n 1 170 TYR n 1 171 LYS n 1 172 THR n 1 173 LEU n 1 174 ARG n 1 175 ALA n 1 176 GLU n 1 177 GLN n 1 178 ALA n 1 179 SER n 1 180 GLN n 1 181 GLU n 1 182 VAL n 1 183 LYS n 1 184 ASN n 1 185 TRP n 1 186 MET n 1 187 THR n 1 188 GLU n 1 189 THR n 1 190 LEU n 1 191 LEU n 1 192 VAL n 1 193 GLN n 1 194 ASN n 1 195 ALA n 1 196 ASN n 1 197 PRO n 1 198 ASP n 1 199 CYS n 1 200 LYS n 1 201 THR n 1 202 ILE n 1 203 LEU n 1 204 LYS n 1 205 ALA n 1 206 LEU n 1 207 GLY n 1 208 PRO n 1 209 GLY n 1 210 ALA n 1 211 THR n 1 212 LEU n 1 213 GLU n 1 214 GLU n 1 215 MET n 1 216 MET n 1 217 THR n 1 218 ALA n 1 219 CYS n 1 220 GLN n 1 221 GLY n 1 222 VAL n 1 223 GLY n 1 224 GLY n 1 225 PRO n 1 226 GLY n 1 227 HIS n 1 228 LYS n 1 229 ALA n 1 230 ARG n 1 231 VAL n 1 232 LEU n 2 1 THR n 2 2 ASN n 2 3 ASN n 2 4 SER n 2 5 PRO n 2 6 SER n 2 7 GLY n 2 8 VAL n 2 9 PHE n 2 10 THR n 2 11 PHE n 2 12 GLY n 2 13 ALA n 2 14 ASN n 2 15 SER n 2 16 SER n 2 17 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 232 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP B6DRA0_9HIV1 B6DRA0 ? 1 ;PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEW DRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEP FRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL ; 133 2 UNP NU153_HUMAN P49790 ? 2 TNNSPSGVFTFGANSST 1407 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8CKY A 2 ? 232 ? B6DRA0 133 ? 363 ? 1 231 2 2 8CKY B 1 ? 17 ? P49790 1407 ? 1423 ? 1407 1423 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 8CKY _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B6DRA0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8CKY _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8CKY _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.009 ? 1769 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.874 ? 2405 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 12.590 ? 652 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.049 ? 273 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 311 ? f_plane_restr ? ? # _struct.entry_id 8CKY _struct.title 'HIV-1 mature capsid hexamer from CA-IP6 CLPs, bound to Nup153 peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8CKY _struct_keywords.text 'Capsid, Hexamer, HIV-1, Mature, Nup153, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 17 ? ALA A 32 ? SER A 16 ALA A 31 1 ? 16 HELX_P HELX_P2 AA2 GLU A 36 ? SER A 45 ? GLU A 35 SER A 44 1 ? 10 HELX_P HELX_P3 AA3 THR A 49 ? VAL A 60 ? THR A 48 VAL A 59 1 ? 12 HELX_P HELX_P4 AA4 HIS A 63 ? HIS A 85 ? HIS A 62 HIS A 84 1 ? 23 HELX_P HELX_P5 AA5 ARG A 101 ? ALA A 106 ? ARG A 100 ALA A 105 1 ? 6 HELX_P HELX_P6 AA6 THR A 111 ? THR A 120 ? THR A 110 THR A 119 1 ? 10 HELX_P HELX_P7 AA7 PRO A 126 ? SER A 147 ? PRO A 125 SER A 146 1 ? 22 HELX_P HELX_P8 AA8 SER A 150 ? ILE A 154 ? SER A 149 ILE A 153 5 ? 5 HELX_P HELX_P9 AA9 PRO A 161 ? GLN A 177 ? PRO A 160 GLN A 176 1 ? 17 HELX_P HELX_P10 AB1 SER A 179 ? ASN A 194 ? SER A 178 ASN A 193 1 ? 16 HELX_P HELX_P11 AB2 ASN A 196 ? LEU A 206 ? ASN A 195 LEU A 205 1 ? 11 HELX_P HELX_P12 AB3 THR A 211 ? CYS A 219 ? THR A 210 CYS A 218 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 122 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 121 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 123 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 122 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.28 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 3 ? GLN A 5 ? ILE A 2 GLN A 4 AA1 2 MET A 11 ? HIS A 13 ? MET A 10 HIS A 12 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 4 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 12 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 11 # _atom_sites.entry_id 8CKY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 PRO 2 1 1 PRO PRO A . n A 1 3 ILE 3 2 2 ILE ILE A . n A 1 4 VAL 4 3 3 VAL VAL A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 GLN 8 7 7 GLN GLN A . n A 1 9 GLY 9 8 8 GLY GLY A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 MET 11 10 10 MET MET A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 HIS 13 12 12 HIS HIS A . n A 1 14 GLN 14 13 13 GLN GLN A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 ILE 16 15 15 ILE ILE A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 PRO 18 17 17 PRO PRO A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 TRP 24 23 23 TRP TRP A . n A 1 25 VAL 25 24 24 VAL VAL A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 VAL 28 27 27 VAL VAL A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 PHE 33 32 32 PHE PHE A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 MET 40 39 39 MET MET A . n A 1 41 PHE 41 40 40 PHE PHE A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 SER 45 44 44 SER SER A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 PRO 50 49 49 PRO PRO A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 ASP 52 51 51 ASP ASP A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 ASN 54 53 53 ASN ASN A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 MET 56 55 55 MET MET A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 HIS 63 62 62 HIS HIS A . n A 1 64 GLN 64 63 63 GLN GLN A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 MET 67 66 66 MET MET A . n A 1 68 GLN 68 67 67 GLN GLN A . n A 1 69 MET 69 68 68 MET MET A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 THR 73 72 72 THR THR A . n A 1 74 ILE 74 73 73 ILE ILE A . n A 1 75 ASN 75 74 74 ASN ASN A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 TRP 81 80 80 TRP TRP A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 ARG 83 82 82 ARG ARG A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 HIS 85 84 84 HIS HIS A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 HIS 88 87 87 HIS HIS A . n A 1 89 ALA 89 88 ? ? ? A . n A 1 90 GLY 90 89 ? ? ? A . n A 1 91 PRO 91 90 ? ? ? A . n A 1 92 ILE 92 91 ? ? ? A . n A 1 93 ALA 93 92 ? ? ? A . n A 1 94 PRO 94 93 ? ? ? A . n A 1 95 GLY 95 94 ? ? ? A . n A 1 96 GLN 96 95 ? ? ? A . n A 1 97 MET 97 96 96 MET MET A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 PRO 100 99 99 PRO PRO A . n A 1 101 ARG 101 100 100 ARG ARG A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ALA 106 105 105 ALA ALA A . n A 1 107 GLY 107 106 106 GLY GLY A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 SER 110 109 109 SER SER A . n A 1 111 THR 111 110 110 THR THR A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 GLN 113 112 112 GLN GLN A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 GLN 115 114 114 GLN GLN A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 TRP 118 117 117 TRP TRP A . n A 1 119 MET 119 118 118 MET MET A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 HIS 121 120 120 HIS HIS A . n A 1 122 ASN 122 121 121 ASN ASN A . n A 1 123 PRO 123 122 122 PRO PRO A . n A 1 124 PRO 124 123 123 PRO PRO A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 PRO 126 125 125 PRO PRO A . n A 1 127 VAL 127 126 126 VAL VAL A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 ILE 130 129 129 ILE ILE A . n A 1 131 TYR 131 130 130 TYR TYR A . n A 1 132 LYS 132 131 131 LYS LYS A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 TRP 134 133 133 TRP TRP A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 LEU 137 136 136 LEU LEU A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 ASN 140 139 139 ASN ASN A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ILE 142 141 141 ILE ILE A . n A 1 143 VAL 143 142 142 VAL VAL A . n A 1 144 ARG 144 143 143 ARG ARG A . n A 1 145 MET 145 144 144 MET MET A . n A 1 146 TYR 146 145 145 TYR TYR A . n A 1 147 SER 147 146 146 SER SER A . n A 1 148 PRO 148 147 147 PRO PRO A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 SER 150 149 149 SER SER A . n A 1 151 ILE 151 150 150 ILE ILE A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 ASP 153 152 152 ASP ASP A . n A 1 154 ILE 154 153 153 ILE ILE A . n A 1 155 ARG 155 154 154 ARG ARG A . n A 1 156 GLN 156 155 155 GLN GLN A . n A 1 157 GLY 157 156 156 GLY GLY A . n A 1 158 PRO 158 157 157 PRO PRO A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 GLU 160 159 159 GLU GLU A . n A 1 161 PRO 161 160 160 PRO PRO A . n A 1 162 PHE 162 161 161 PHE PHE A . n A 1 163 ARG 163 162 162 ARG ARG A . n A 1 164 ASP 164 163 163 ASP ASP A . n A 1 165 TYR 165 164 164 TYR TYR A . n A 1 166 VAL 166 165 165 VAL VAL A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 ARG 168 167 167 ARG ARG A . n A 1 169 PHE 169 168 168 PHE PHE A . n A 1 170 TYR 170 169 169 TYR TYR A . n A 1 171 LYS 171 170 170 LYS LYS A . n A 1 172 THR 172 171 171 THR THR A . n A 1 173 LEU 173 172 172 LEU LEU A . n A 1 174 ARG 174 173 173 ARG ARG A . n A 1 175 ALA 175 174 174 ALA ALA A . n A 1 176 GLU 176 175 175 GLU GLU A . n A 1 177 GLN 177 176 176 GLN GLN A . n A 1 178 ALA 178 177 177 ALA ALA A . n A 1 179 SER 179 178 178 SER SER A . n A 1 180 GLN 180 179 179 GLN GLN A . n A 1 181 GLU 181 180 180 GLU GLU A . n A 1 182 VAL 182 181 181 VAL VAL A . n A 1 183 LYS 183 182 182 LYS LYS A . n A 1 184 ASN 184 183 183 ASN ASN A . n A 1 185 TRP 185 184 184 TRP TRP A . n A 1 186 MET 186 185 185 MET MET A . n A 1 187 THR 187 186 186 THR THR A . n A 1 188 GLU 188 187 187 GLU GLU A . n A 1 189 THR 189 188 188 THR THR A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 LEU 191 190 190 LEU LEU A . n A 1 192 VAL 192 191 191 VAL VAL A . n A 1 193 GLN 193 192 192 GLN GLN A . n A 1 194 ASN 194 193 193 ASN ASN A . n A 1 195 ALA 195 194 194 ALA ALA A . n A 1 196 ASN 196 195 195 ASN ASN A . n A 1 197 PRO 197 196 196 PRO PRO A . n A 1 198 ASP 198 197 197 ASP ASP A . n A 1 199 CYS 199 198 198 CYS CYS A . n A 1 200 LYS 200 199 199 LYS LYS A . n A 1 201 THR 201 200 200 THR THR A . n A 1 202 ILE 202 201 201 ILE ILE A . n A 1 203 LEU 203 202 202 LEU LEU A . n A 1 204 LYS 204 203 203 LYS LYS A . n A 1 205 ALA 205 204 204 ALA ALA A . n A 1 206 LEU 206 205 205 LEU LEU A . n A 1 207 GLY 207 206 206 GLY GLY A . n A 1 208 PRO 208 207 207 PRO PRO A . n A 1 209 GLY 209 208 208 GLY GLY A . n A 1 210 ALA 210 209 209 ALA ALA A . n A 1 211 THR 211 210 210 THR THR A . n A 1 212 LEU 212 211 211 LEU LEU A . n A 1 213 GLU 213 212 212 GLU GLU A . n A 1 214 GLU 214 213 213 GLU GLU A . n A 1 215 MET 215 214 214 MET MET A . n A 1 216 MET 216 215 215 MET MET A . n A 1 217 THR 217 216 216 THR THR A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 CYS 219 218 218 CYS CYS A . n A 1 220 GLN 220 219 219 GLN GLN A . n A 1 221 GLY 221 220 220 GLY GLY A . n A 1 222 VAL 222 221 221 VAL VAL A . n A 1 223 GLY 223 222 ? ? ? A . n A 1 224 GLY 224 223 ? ? ? A . n A 1 225 PRO 225 224 ? ? ? A . n A 1 226 GLY 226 225 ? ? ? A . n A 1 227 HIS 227 226 ? ? ? A . n A 1 228 LYS 228 227 ? ? ? A . n A 1 229 ALA 229 228 ? ? ? A . n A 1 230 ARG 230 229 ? ? ? A . n A 1 231 VAL 231 230 ? ? ? A . n A 1 232 LEU 232 231 ? ? ? A . n B 2 1 THR 1 1407 ? ? ? B . n B 2 2 ASN 2 1408 ? ? ? B . n B 2 3 ASN 3 1409 ? ? ? B . n B 2 4 SER 4 1410 1410 SER SER B . n B 2 5 PRO 5 1411 1411 PRO PRO B . n B 2 6 SER 6 1412 1412 SER SER B . n B 2 7 GLY 7 1413 1413 GLY GLY B . n B 2 8 VAL 8 1414 1414 VAL VAL B . n B 2 9 PHE 9 1415 1415 PHE PHE B . n B 2 10 THR 10 1416 1416 THR THR B . n B 2 11 PHE 11 1417 1417 PHE PHE B . n B 2 12 GLY 12 1418 1418 GLY GLY B . n B 2 13 ALA 13 1419 1419 ALA ALA B . n B 2 14 ASN 14 1420 1420 ASN ASN B . n B 2 15 SER 15 1421 ? ? ? B . n B 2 16 SER 16 1422 ? ? ? B . n B 2 17 THR 17 1423 ? ? ? B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email briggs@biochem.mpg.de _pdbx_contact_author.name_first John _pdbx_contact_author.name_last Briggs _pdbx_contact_author.name_mi 'A G' _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3990-6910 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 660 ? 1 MORE -3 ? 1 'SSA (A^2)' 12530 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 -0.000000 -0.000000 0.00000 -0.000000 1.000000 0.000000 0.00000 -0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.500000 -0.866025 -0.000000 243.91750 0.866025 0.500000 0.000000 -65.35750 0.000000 0.000000 1.000000 -0.00000 3 'point symmetry operation' ? ? -0.500000 -0.866025 -0.000000 422.47750 0.866025 -0.500000 0.000000 113.20250 0.000000 0.000000 1.000000 0.00000 4 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 357.12000 0.000000 -1.000000 0.000000 357.12000 0.000000 0.000000 1.000000 0.00000 5 'point symmetry operation' ? ? -0.500000 0.866025 0.000000 113.20250 -0.866025 -0.500000 0.000000 422.47750 -0.000000 0.000000 1.000000 0.00000 6 'point symmetry operation' ? ? 0.500000 0.866025 0.000000 -65.35750 -0.866025 0.500000 0.000000 243.91750 -0.000000 0.000000 1.000000 0.00000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-04-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version dev_3689: _software.pdbx_ordinal 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8CKY _em_3d_fitting.method ? _em_3d_fitting.target_criteria Cross-correlation _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # loop_ _em_3d_fitting_list.id _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.details _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 4XFX ? ? ? ? ? PDB 'experimental model' 4XFX 2 1 5TSX ? ? ? ? ? PDB 'experimental model' 5TSX # _em_3d_reconstruction.entry_id 8CKY _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 595899 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 4 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 6.1 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'HIV-1 Mature Capsid' _em_entity_assembly.details 'Hexamer bound to FG repeat containing Nup153 peptide.' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_image_scans.entry_id 8CKY _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size 14 _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8CKY _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 3000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type C-flat-2/2 _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8CKY _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 291 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8CKY _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8CKY _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C6 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 4 ? CG ? A GLN 5 CG 2 1 Y 1 A GLN 4 ? CD ? A GLN 5 CD 3 1 Y 1 A GLN 4 ? OE1 ? A GLN 5 OE1 4 1 Y 1 A GLN 4 ? NE2 ? A GLN 5 NE2 5 1 Y 1 A ASN 5 ? CG ? A ASN 6 CG 6 1 Y 1 A ASN 5 ? OD1 ? A ASN 6 OD1 7 1 Y 1 A ASN 5 ? ND2 ? A ASN 6 ND2 8 1 Y 1 A GLN 7 ? CG ? A GLN 8 CG 9 1 Y 1 A GLN 7 ? CD ? A GLN 8 CD 10 1 Y 1 A GLN 7 ? OE1 ? A GLN 8 OE1 11 1 Y 1 A GLN 7 ? NE2 ? A GLN 8 NE2 12 1 Y 1 A GLN 9 ? CG ? A GLN 10 CG 13 1 Y 1 A GLN 9 ? CD ? A GLN 10 CD 14 1 Y 1 A GLN 9 ? OE1 ? A GLN 10 OE1 15 1 Y 1 A GLN 9 ? NE2 ? A GLN 10 NE2 16 1 Y 1 A MET 10 ? CG ? A MET 11 CG 17 1 Y 1 A MET 10 ? SD ? A MET 11 SD 18 1 Y 1 A MET 10 ? CE ? A MET 11 CE 19 1 Y 1 A GLU 98 ? CG ? A GLU 99 CG 20 1 Y 1 A GLU 98 ? CD ? A GLU 99 CD 21 1 Y 1 A GLU 98 ? OE1 ? A GLU 99 OE1 22 1 Y 1 A GLU 98 ? OE2 ? A GLU 99 OE2 23 1 Y 1 A ASN 121 ? CG ? A ASN 122 CG 24 1 Y 1 A ASN 121 ? OD1 ? A ASN 122 OD1 25 1 Y 1 A ASN 121 ? ND2 ? A ASN 122 ND2 26 1 Y 1 A LYS 158 ? CG ? A LYS 159 CG 27 1 Y 1 A LYS 158 ? CD ? A LYS 159 CD 28 1 Y 1 A LYS 158 ? CE ? A LYS 159 CE 29 1 Y 1 A LYS 158 ? NZ ? A LYS 159 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A ALA 88 ? A ALA 89 3 1 Y 1 A GLY 89 ? A GLY 90 4 1 Y 1 A PRO 90 ? A PRO 91 5 1 Y 1 A ILE 91 ? A ILE 92 6 1 Y 1 A ALA 92 ? A ALA 93 7 1 Y 1 A PRO 93 ? A PRO 94 8 1 Y 1 A GLY 94 ? A GLY 95 9 1 Y 1 A GLN 95 ? A GLN 96 10 1 Y 1 A GLY 222 ? A GLY 223 11 1 Y 1 A GLY 223 ? A GLY 224 12 1 Y 1 A PRO 224 ? A PRO 225 13 1 Y 1 A GLY 225 ? A GLY 226 14 1 Y 1 A HIS 226 ? A HIS 227 15 1 Y 1 A LYS 227 ? A LYS 228 16 1 Y 1 A ALA 228 ? A ALA 229 17 1 Y 1 A ARG 229 ? A ARG 230 18 1 Y 1 A VAL 230 ? A VAL 231 19 1 Y 1 A LEU 231 ? A LEU 232 20 1 Y 1 B THR 1407 ? B THR 1 21 1 Y 1 B ASN 1408 ? B ASN 2 22 1 Y 1 B ASN 1409 ? B ASN 3 23 1 Y 1 B SER 1421 ? B SER 15 24 1 Y 1 B SER 1422 ? B SER 16 25 1 Y 1 B THR 1423 ? B THR 17 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 300 mM NaCl 1 'sodium chloride' 1 2 mM C9H15O6P 2 TCEP 1 50 mM C6H13NO4S 3 MES 1 2.5 mM C6H18O24P6 4 'inositol hexakisphosphate' 1 0.1 % C2H6OS 5 DMSO # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.027 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 11676 _em_entity_assembly_naturalsource.organism 'Human immunodeficiency virus 1' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 4770 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'TFS Selectris' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1457736 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? crYOLO 1.82 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 3.3.2 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF Chimera' ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? cryoSPARC 3.3.2 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 3.3.2 CLASSIFICATION ? 11 1 ? ? cryoSPARC 3.3.2 RECONSTRUCTION ? 12 1 ? ? cryoSPARC 3.3.2 'MODEL REFINEMENT' ? 13 ? 1 ? ISOLDE ? 'MODEL REFINEMENT' ? 14 ? 1 ? Coot ? 'MODEL REFINEMENT' ? 15 ? 1 ? PHENIX ? 'VOLUME SELECTION' ? 16 1 1 1 ? ? 'SERIES ALIGNMENT' ? 17 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 18 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 19 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 20 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 21 1 1 1 ? ? # _em_specimen.concentration 0.5 _em_specimen.details 'VLP assembly, bound to Nup153 peptide.' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Max Planck Society' Germany ? 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' R01AI147890 2 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 5U54AI150472-09 3 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 'U54 AI170855-01' 4 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UP_1201/16 5 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 4XFX 2 'experimental model' PDB 5TSX # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'Assembled in presence of IP6' #