HEADER MEMBRANE PROTEIN 16-FEB-23 8CL7 TITLE KROKINOBACTER EIKASTUS RHODOPSIN 2 (KR2) IN DARK STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM PUMPING RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DOKDONIA EIKASTA; SOURCE 3 ORGANISM_TAXID: 308116; SOURCE 4 GENE: NAR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS KR2, LIGHT DRIVEN SODIUM PUMP, SODIUM PUMP, PHOTOACTIVATION, KEYWDS 2 PHOTOCYCLE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.BERTRAND,M.WRANIK,M.W.KEPA,T.WEINERT,J.STANDFUSS REVDAT 1 13-DEC-23 8CL7 0 JRNL AUTH M.WRANIK,M.W.KEPA,E.V.BEALE,D.JAMES,Q.BERTRAND,T.WEINERT, JRNL AUTH 2 A.FURRER,H.GLOVER,D.GASHI,M.CARRILLO,Y.KONDO,R.T.STIPP, JRNL AUTH 3 G.KHUSAINOV,K.NASS,D.OZEROV,C.CIRELLI,P.J.M.JOHNSON, JRNL AUTH 4 F.DWORKOWSKI,J.H.BEALE,S.STUBBS,T.ZAMOFING,M.SCHNEIDER, JRNL AUTH 5 K.KRAUSKOPF,L.GAO,O.THORN-SESHOLD,C.BOSTEDT,C.BACELLAR, JRNL AUTH 6 M.O.STEINMETZ,C.MILNE,J.STANDFUSS JRNL TITL A MULTI-RESERVOIR EXTRUDER FOR TIME-RESOLVED SERIAL PROTEIN JRNL TITL 2 CRYSTALLOGRAPHY AND COMPOUND SCREENING AT X-RAY JRNL TITL 3 FREE-ELECTRON LASERS. JRNL REF NAT COMMUN V. 14 7956 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 38042952 JRNL DOI 10.1038/S41467-023-43523-5 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.8 REMARK 3 NUMBER OF REFLECTIONS : 28709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.9700 - 4.2200 1.00 2951 222 0.1700 0.2018 REMARK 3 2 4.2200 - 3.3600 1.00 2837 212 0.1321 0.1603 REMARK 3 3 3.3600 - 2.9400 1.00 2808 210 0.1410 0.1520 REMARK 3 4 2.9400 - 2.6700 1.00 2791 209 0.1305 0.1467 REMARK 3 5 2.6700 - 2.4800 1.00 2760 206 0.1412 0.1717 REMARK 3 6 2.4800 - 2.3300 1.00 2760 207 0.1480 0.1844 REMARK 3 7 2.3300 - 2.2200 0.98 2701 203 0.1735 0.2279 REMARK 3 8 2.2200 - 2.1200 0.78 2136 159 0.1792 0.2484 REMARK 3 9 2.1200 - 2.0400 0.58 1588 119 0.1980 0.2361 REMARK 3 10 2.0400 - 1.9700 0.43 1164 88 0.2206 0.2119 REMARK 3 11 1.9700 - 1.9100 0.30 834 62 0.2290 0.2837 REMARK 3 12 1.9100 - 1.8500 0.23 622 46 0.2189 0.1687 REMARK 3 13 1.8500 - 1.8000 0.17 448 34 0.2477 0.3446 REMARK 3 14 1.8000 - 1.7600 0.11 309 23 0.2379 0.2624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2429 REMARK 3 ANGLE : 1.166 3239 REMARK 3 CHIRALITY : 0.062 346 REMARK 3 PLANARITY : 0.011 392 REMARK 3 DIHEDRAL : 15.678 904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7223 105.6621 243.2312 REMARK 3 T TENSOR REMARK 3 T11: 0.6948 T22: 0.4180 REMARK 3 T33: 0.2210 T12: -0.0835 REMARK 3 T13: 0.0029 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 4.3452 L22: 2.3480 REMARK 3 L33: 6.3474 L12: -2.9294 REMARK 3 L13: -0.6897 L23: -1.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: 0.5954 S13: -0.5960 REMARK 3 S21: -0.4601 S22: -0.1328 S23: 0.2669 REMARK 3 S31: 0.6561 S32: -0.2552 S33: 0.2187 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.9274 119.3329 260.3858 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.2431 REMARK 3 T33: 0.1938 T12: -0.0307 REMARK 3 T13: -0.0460 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.7359 L22: 3.1211 REMARK 3 L33: 5.5775 L12: 0.4044 REMARK 3 L13: 0.8158 L23: 1.7821 REMARK 3 S TENSOR REMARK 3 S11: -0.1048 S12: 0.3685 S13: 0.1880 REMARK 3 S21: -0.4991 S22: -0.0203 S23: 0.2367 REMARK 3 S31: -0.5836 S32: -0.4880 S33: 0.1682 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.9868 124.5185 285.6795 REMARK 3 T TENSOR REMARK 3 T11: 0.3944 T22: 0.2590 REMARK 3 T33: 0.3121 T12: 0.0341 REMARK 3 T13: 0.0279 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 5.7741 L22: 5.7238 REMARK 3 L33: 6.1803 L12: -4.4661 REMARK 3 L13: 5.9605 L23: -4.7961 REMARK 3 S TENSOR REMARK 3 S11: -0.6742 S12: -0.1902 S13: 0.2222 REMARK 3 S21: -0.2500 S22: 0.2682 S23: -0.2978 REMARK 3 S31: -0.8544 S32: -0.8957 S33: 0.4850 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.5986 117.7987 257.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.3024 T22: 0.2086 REMARK 3 T33: 0.1830 T12: -0.0469 REMARK 3 T13: -0.0311 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.4359 L22: 1.4329 REMARK 3 L33: 5.8793 L12: 0.1762 REMARK 3 L13: 0.4902 L23: 0.4883 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: 0.4406 S13: -0.0131 REMARK 3 S21: -0.4636 S22: 0.0660 S23: 0.0408 REMARK 3 S31: -0.4007 S32: 0.0665 S33: 0.0381 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.4419 113.7348 245.6884 REMARK 3 T TENSOR REMARK 3 T11: 0.6729 T22: 0.6218 REMARK 3 T33: 0.2130 T12: -0.0631 REMARK 3 T13: 0.0333 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.9458 L22: 3.4023 REMARK 3 L33: 3.8734 L12: -0.2140 REMARK 3 L13: -0.4960 L23: -3.5466 REMARK 3 S TENSOR REMARK 3 S11: -0.2976 S12: 0.2889 S13: 0.1040 REMARK 3 S21: -0.2934 S22: 0.0121 S23: -0.1180 REMARK 3 S31: -0.8976 S32: 1.5799 S33: 0.3072 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.3894 110.2772 274.5351 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.1656 REMARK 3 T33: 0.2057 T12: -0.0175 REMARK 3 T13: 0.0198 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.5128 L22: 0.9812 REMARK 3 L33: 7.8715 L12: -0.1929 REMARK 3 L13: 0.9235 L23: -1.0866 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.0870 S13: -0.0782 REMARK 3 S21: -0.1401 S22: -0.0522 S23: -0.0622 REMARK 3 S31: 0.0461 S32: 0.4174 S33: 0.1035 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.5273 102.8764 266.4770 REMARK 3 T TENSOR REMARK 3 T11: 0.3424 T22: 0.3199 REMARK 3 T33: 0.2787 T12: 0.0954 REMARK 3 T13: 0.0926 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.5971 L22: 1.8379 REMARK 3 L33: 5.1928 L12: 0.4146 REMARK 3 L13: 0.6158 L23: 2.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: 0.2314 S13: -0.1732 REMARK 3 S21: -0.4834 S22: 0.0662 S23: -0.3747 REMARK 3 S31: 0.3455 S32: 1.2527 S33: -0.2260 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.2982 97.1532 271.3945 REMARK 3 T TENSOR REMARK 3 T11: 0.4559 T22: 0.1770 REMARK 3 T33: 0.3207 T12: 0.0278 REMARK 3 T13: 0.0436 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.4796 L22: 1.6439 REMARK 3 L33: 4.8753 L12: -0.7060 REMARK 3 L13: -1.6673 L23: 1.7418 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.2317 S13: -0.4473 REMARK 3 S21: -0.4129 S22: -0.0762 S23: -0.1172 REMARK 3 S31: 1.0270 S32: 0.1112 S33: 0.1837 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0550 104.0774 277.2404 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.1642 REMARK 3 T33: 0.2442 T12: -0.0962 REMARK 3 T13: -0.0086 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.3855 L22: 1.1288 REMARK 3 L33: 4.5241 L12: -0.0468 REMARK 3 L13: -1.5538 L23: -0.4924 REMARK 3 S TENSOR REMARK 3 S11: -0.1261 S12: 0.0148 S13: -0.3040 REMARK 3 S21: -0.2179 S22: 0.0467 S23: 0.2113 REMARK 3 S31: 0.6579 S32: -0.3805 S33: 0.2388 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.5650 96.2839 249.8997 REMARK 3 T TENSOR REMARK 3 T11: 0.9878 T22: 0.5533 REMARK 3 T33: 0.4160 T12: -0.1628 REMARK 3 T13: -0.0268 T23: -0.2102 REMARK 3 L TENSOR REMARK 3 L11: 7.5961 L22: 5.0619 REMARK 3 L33: 7.5879 L12: 2.5227 REMARK 3 L13: 6.6966 L23: 1.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: 1.1054 S13: -0.7063 REMARK 3 S21: -0.7186 S22: -0.1784 S23: 0.3154 REMARK 3 S31: 0.6470 S32: 0.1408 S33: 0.0870 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.9443 111.4650 270.8180 REMARK 3 T TENSOR REMARK 3 T11: 0.1033 T22: 0.1374 REMARK 3 T33: 0.1965 T12: -0.0610 REMARK 3 T13: -0.0097 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.5909 L22: 2.9761 REMARK 3 L33: 4.7773 L12: 0.1155 REMARK 3 L13: 1.5152 L23: 1.2038 REMARK 3 S TENSOR REMARK 3 S11: -0.1413 S12: -0.0096 S13: -0.0026 REMARK 3 S21: -0.1988 S22: 0.0033 S23: 0.2317 REMARK 3 S31: 0.1612 S32: -0.5279 S33: 0.2229 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 293.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : ESA REMARK 200 X-RAY GENERATOR MODEL : SWISSFEL ARAMIS BEAMLINE ESA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.028919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI JUNGFRAU 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.9.1 REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL 0.9.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 15.976 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 65.7 REMARK 200 DATA REDUNDANCY : 960.8 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 234.7 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.20_4459 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM ACETATE PH 4.4 150 MM REMARK 280 MAGNESIUM CHLORIDE 34 % PEG 200, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.44500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.47500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.44500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.47500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.73000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.44500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.47500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.73000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.44500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 437 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 501 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 51 CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 187 CD CE NZ REMARK 470 LYS A 202 CD CE NZ REMARK 470 VAL A 230 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -70.53 -109.88 REMARK 500 LEU A 103 153.27 71.87 REMARK 500 THR A 131 -78.35 -117.07 REMARK 500 ASP A 231 51.51 -154.71 REMARK 500 SER A 236 -177.57 -174.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 507 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 508 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 7.89 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 302 REMARK 610 LFA A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 LFA A 312 REMARK 610 LFA A 313 REMARK 610 LFA A 314 REMARK 610 LFA A 315 REMARK 610 LFA A 316 REMARK 610 LFA A 317 REMARK 610 LFA A 318 REMARK 610 LFA A 319 REMARK 610 LFA A 320 REMARK 610 LFA A 321 REMARK 610 LFA A 322 REMARK 610 LFA A 323 DBREF 8CL7 A 8 272 UNP N0DKS8 N0DKS8_9FLAO 8 272 SEQRES 1 A 265 ALA ASN PHE GLU ASN PHE ILE GLY ALA THR GLU GLY PHE SEQRES 2 A 265 SER GLU ILE ALA TYR GLN PHE THR SER HIS ILE LEU THR SEQRES 3 A 265 LEU GLY TYR ALA VAL MET LEU ALA GLY LEU LEU TYR PHE SEQRES 4 A 265 ILE LEU THR ILE LYS ASN VAL ASP LYS LYS PHE GLN MET SEQRES 5 A 265 SER ASN ILE LEU SER ALA VAL VAL MET VAL SER ALA PHE SEQRES 6 A 265 LEU LEU LEU TYR ALA GLN ALA GLN ASN TRP THR SER SER SEQRES 7 A 265 PHE THR PHE ASN GLU GLU VAL GLY ARG TYR PHE LEU ASP SEQRES 8 A 265 PRO SER GLY ASP LEU PHE ASN ASN GLY TYR ARG TYR LEU SEQRES 9 A 265 ASN TRP LEU ILE ASP VAL PRO MET LEU LEU PHE GLN ILE SEQRES 10 A 265 LEU PHE VAL VAL SER LEU THR THR SER LYS PHE SER SER SEQRES 11 A 265 VAL ARG ASN GLN PHE TRP PHE SER GLY ALA MET MET ILE SEQRES 12 A 265 ILE THR GLY TYR ILE GLY GLN PHE TYR GLU VAL SER ASN SEQRES 13 A 265 LEU THR ALA PHE LEU VAL TRP GLY ALA ILE SER SER ALA SEQRES 14 A 265 PHE PHE PHE HIS ILE LEU TRP VAL MET LYS LYS VAL ILE SEQRES 15 A 265 ASN GLU GLY LYS GLU GLY ILE SER PRO ALA GLY GLN LYS SEQRES 16 A 265 ILE LEU SER ASN ILE TRP ILE LEU PHE LEU ILE SER TRP SEQRES 17 A 265 THR LEU TYR PRO GLY ALA TYR LEU MET PRO TYR LEU THR SEQRES 18 A 265 GLY VAL ASP GLY PHE LEU TYR SER GLU ASP GLY VAL MET SEQRES 19 A 265 ALA ARG GLN LEU VAL TYR THR ILE ALA ASP VAL SER SER SEQRES 20 A 265 LYS VAL ILE TYR GLY VAL LEU LEU GLY ASN LEU ALA ILE SEQRES 21 A 265 THR LEU SER LYS ASN HET RET A 301 45 HET LFA A 302 49 HET LFA A 303 25 HET LFA A 304 16 HET LFA A 305 19 HET LFA A 306 40 HET LFA A 307 31 HET LFA A 308 25 HET LFA A 309 37 HET LFA A 310 49 HET LFA A 311 16 HET LFA A 312 31 HET LFA A 313 13 HET LFA A 314 21 HET LFA A 315 28 HET LFA A 316 19 HET LFA A 317 16 HET LFA A 318 19 HET LFA A 319 31 HET LFA A 320 10 HET LFA A 321 28 HET LFA A 322 31 HET LFA A 323 37 HETNAM RET RETINAL HETNAM LFA EICOSANE HETSYN LFA LIPID FRAGMENT FORMUL 2 RET C20 H28 O FORMUL 3 LFA 22(C20 H42) FORMUL 25 HOH *109(H2 O) HELIX 1 AA1 ASN A 9 THR A 17 1 9 HELIX 2 AA2 SER A 21 THR A 49 1 29 HELIX 3 AA3 ILE A 50 VAL A 53 5 4 HELIX 4 AA4 ASP A 54 LYS A 56 5 3 HELIX 5 AA5 PHE A 57 SER A 85 1 29 HELIX 6 AA6 ASN A 106 ILE A 124 1 19 HELIX 7 AA7 LEU A 125 VAL A 127 5 3 HELIX 8 AA8 LYS A 134 PHE A 158 1 25 HELIX 9 AA9 ASN A 163 GLU A 194 1 32 HELIX 10 AB1 SER A 197 MET A 224 1 28 HELIX 11 AB2 PRO A 225 LEU A 227 5 3 HELIX 12 AB3 SER A 236 LYS A 271 1 36 SHEET 1 AA1 2 PHE A 86 ASN A 89 0 SHEET 2 AA1 2 ARG A 94 LEU A 97 -1 O ARG A 94 N ASN A 89 LINK NZ LYS A 255 C15 RET A 301 1555 1555 1.35 CRYST1 41.460 84.890 234.950 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004256 0.00000