HEADER SUGAR BINDING PROTEIN 17-FEB-23 8CM8 TITLE GALECTIN-8 N-TERMINAL CARBOHYDRATE RECOGNITION DOMAIN IN COMPLEX WITH TITLE 2 4-(BROMOPHENYL)PHTHALAZINONE D-GALACTAL LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-8; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAL-8,PO66 CARBOHYDRATE-BINDING PROTEIN,PO66-CBP,PROSTATE COMPND 5 CARCINOMA TUMOR ANTIGEN 1,PCTA-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LGALS8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALECTIN, PHTHALAZINONE, INHIBITOR, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.VAN KLAVEREN,M.HAKANSSON,C.DIEHL,N.J.NILSSON REVDAT 1 28-FEB-24 8CM8 0 JRNL AUTH S.VAN KLAVEREN,N.J.NILSSON JRNL TITL HALOGENATED GALACTAL-PHENYLPHTHALAZINONE HYBRIDS AS HIGHLY JRNL TITL 2 SELECTIVE GALECTIN-8N LIGANDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 82202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5961 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE SET COUNT : 348 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14200 REMARK 3 B22 (A**2) : 0.36100 REMARK 3 B33 (A**2) : -0.50300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2586 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2470 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3520 ; 1.914 ; 1.686 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5696 ; 0.650 ; 1.599 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 7.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ; 6.644 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 443 ;12.790 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3049 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 633 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 363 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 54 ; 0.204 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1207 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1228 ; 1.923 ; 2.079 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1227 ; 1.918 ; 2.076 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1545 ; 2.262 ; 3.732 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1545 ; 2.261 ; 3.733 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 2.349 ; 2.457 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1358 ; 2.349 ; 2.457 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1968 ; 2.938 ; 4.365 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1969 ; 2.937 ; 4.365 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5056 ; 5.653 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8CM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128717. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99990 REMARK 200 MONOCHROMATOR : ACCEL FIXED EXIT DOUBLE CRYSTAL REMARK 200 OPTICS : OXFORD DANFYSIK/SESO TWO STAGE REMARK 200 DEMAGNIFICATION USING TWO K-B REMARK 200 PAIRS OF BIMORPH TYPE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.3.6.3 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.14 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A CO-CRYSTAL WITH LACTOSE, GROWN FROM REMARK 280 12 MG/ML GALECTIN-8N IN 10 MM LACTOSE, 10 MM TRIS/HCL PH 8.0, 1 REMARK 280 MM TCEP AND 150 MM SODIUM CHLORIDE MIXED WITH 25% (W/V) PEG 2000 REMARK 280 MME) IN A HANGING DROP, WAS USED TO SOAK THE COMPOUND BY REMARK 280 TRANSFERRING CRYSTALS IN THREE STEPS TO SOAKING DROPS. THESE REMARK 280 WERE 2 UL DROPS WITH A SOAKING SOLUTION OF 20% ETHYLENE GLYCOL, REMARK 280 25% PEG 2000 MME, 10 MM TRIS PH 8, 1 MM TCEP, 50 MM NACL, AND 2 REMARK 280 MM COMPOUND 10. THE INCUBATION TIMES IN THE FIRST TWO DROPS WERE REMARK 280 ABOUT 10 MIN AND IN THE THIRD DROP ABOUT 24 H. THEN THE CRYSTALS REMARK 280 WERE TRANSFERRED TO A CRYO SOLUTION WITH THE SAME CONSTITUENTS REMARK 280 AND FLASH-FROZEN IN LIQUID NITROGEN., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.35500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.37500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.37500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.35500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 ASN A 7 REMARK 465 ASP A 156 REMARK 465 LEU A 157 REMARK 465 GLN A 158 REMARK 465 SER A 159 REMARK 465 THR A 160 REMARK 465 GLN A 161 REMARK 465 ALA A 162 REMARK 465 SER A 163 REMARK 465 SER A 164 REMARK 465 LEU A 165 REMARK 465 GLU A 166 REMARK 465 LEU A 167 REMARK 465 THR A 168 REMARK 465 GLU A 169 REMARK 465 ILE A 170 REMARK 465 SER A 171 REMARK 465 ARG A 172 REMARK 465 GLU A 173 REMARK 465 ASN A 174 REMARK 465 VAL A 175 REMARK 465 PRO A 176 REMARK 465 LYS A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 THR A 180 REMARK 465 PRO A 181 REMARK 465 GLN A 182 REMARK 465 LEU A 183 REMARK 465 ARG A 184 REMARK 465 LEU A 185 REMARK 465 PRO A 186 REMARK 465 PHE A 187 REMARK 465 ALA A 188 REMARK 465 ALA A 189 REMARK 465 ARG A 190 REMARK 465 LEU A 191 REMARK 465 ASN A 192 REMARK 465 THR A 193 REMARK 465 PRO A 194 REMARK 465 MET A 195 REMARK 465 GLY A 196 REMARK 465 PRO A 197 REMARK 465 GLY A 198 REMARK 465 ARG A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 VAL A 202 REMARK 465 VAL A 203 REMARK 465 LYS A 204 REMARK 465 GLY A 205 REMARK 465 GLU A 206 REMARK 465 VAL A 207 REMARK 465 ASN A 208 REMARK 465 ALA A 209 REMARK 465 ASN A 210 REMARK 465 ALA A 211 REMARK 465 LYS A 212 REMARK 465 SER A 213 REMARK 465 PHE A 214 REMARK 465 ASN A 215 REMARK 465 VAL A 216 REMARK 465 ASP A 217 REMARK 465 LEU A 218 REMARK 465 LEU A 219 REMARK 465 ALA A 220 REMARK 465 GLY A 221 REMARK 465 LYS A 222 REMARK 465 SER A 223 REMARK 465 LYS A 224 REMARK 465 ASP A 225 REMARK 465 ILE A 226 REMARK 465 ALA A 227 REMARK 465 LEU A 228 REMARK 465 HIS A 229 REMARK 465 LEU A 230 REMARK 465 ASN A 231 REMARK 465 PRO A 232 REMARK 465 ARG A 233 REMARK 465 LEU A 234 REMARK 465 ASN A 235 REMARK 465 ILE A 236 REMARK 465 LYS A 237 REMARK 465 ALA A 238 REMARK 465 PHE A 239 REMARK 465 VAL A 240 REMARK 465 ARG A 241 REMARK 465 ASN A 242 REMARK 465 SER A 243 REMARK 465 PHE A 244 REMARK 465 LEU A 245 REMARK 465 GLN A 246 REMARK 465 GLU A 247 REMARK 465 SER A 248 REMARK 465 TRP A 249 REMARK 465 GLY A 250 REMARK 465 GLU A 251 REMARK 465 GLU A 252 REMARK 465 GLU A 253 REMARK 465 ARG A 254 REMARK 465 ASN A 255 REMARK 465 ILE A 256 REMARK 465 THR A 257 REMARK 465 SER A 258 REMARK 465 PHE A 259 REMARK 465 PRO A 260 REMARK 465 PHE A 261 REMARK 465 SER A 262 REMARK 465 PRO A 263 REMARK 465 GLY A 264 REMARK 465 MET A 265 REMARK 465 TYR A 266 REMARK 465 PHE A 267 REMARK 465 GLU A 268 REMARK 465 MET A 269 REMARK 465 ILE A 270 REMARK 465 ILE A 271 REMARK 465 TYR A 272 REMARK 465 CYS A 273 REMARK 465 ASP A 274 REMARK 465 VAL A 275 REMARK 465 ARG A 276 REMARK 465 GLU A 277 REMARK 465 PHE A 278 REMARK 465 LYS A 279 REMARK 465 VAL A 280 REMARK 465 ALA A 281 REMARK 465 VAL A 282 REMARK 465 ASN A 283 REMARK 465 GLY A 284 REMARK 465 VAL A 285 REMARK 465 HIS A 286 REMARK 465 SER A 287 REMARK 465 LEU A 288 REMARK 465 GLU A 289 REMARK 465 TYR A 290 REMARK 465 LYS A 291 REMARK 465 HIS A 292 REMARK 465 ARG A 293 REMARK 465 PHE A 294 REMARK 465 LYS A 295 REMARK 465 GLU A 296 REMARK 465 LEU A 297 REMARK 465 SER A 298 REMARK 465 SER A 299 REMARK 465 ILE A 300 REMARK 465 ASP A 301 REMARK 465 THR A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 ILE A 305 REMARK 465 ASN A 306 REMARK 465 GLY A 307 REMARK 465 ASP A 308 REMARK 465 ILE A 309 REMARK 465 HIS A 310 REMARK 465 LEU A 311 REMARK 465 LEU A 312 REMARK 465 GLU A 313 REMARK 465 VAL A 314 REMARK 465 ARG A 315 REMARK 465 SER A 316 REMARK 465 TRP A 317 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 ASN B 6 REMARK 465 SER B 155 REMARK 465 ASP B 156 REMARK 465 LEU B 157 REMARK 465 GLN B 158 REMARK 465 SER B 159 REMARK 465 THR B 160 REMARK 465 GLN B 161 REMARK 465 ALA B 162 REMARK 465 SER B 163 REMARK 465 SER B 164 REMARK 465 LEU B 165 REMARK 465 GLU B 166 REMARK 465 LEU B 167 REMARK 465 THR B 168 REMARK 465 GLU B 169 REMARK 465 ILE B 170 REMARK 465 SER B 171 REMARK 465 ARG B 172 REMARK 465 GLU B 173 REMARK 465 ASN B 174 REMARK 465 VAL B 175 REMARK 465 PRO B 176 REMARK 465 LYS B 177 REMARK 465 SER B 178 REMARK 465 GLY B 179 REMARK 465 THR B 180 REMARK 465 PRO B 181 REMARK 465 GLN B 182 REMARK 465 LEU B 183 REMARK 465 ARG B 184 REMARK 465 LEU B 185 REMARK 465 PRO B 186 REMARK 465 PHE B 187 REMARK 465 ALA B 188 REMARK 465 ALA B 189 REMARK 465 ARG B 190 REMARK 465 LEU B 191 REMARK 465 ASN B 192 REMARK 465 THR B 193 REMARK 465 PRO B 194 REMARK 465 MET B 195 REMARK 465 GLY B 196 REMARK 465 PRO B 197 REMARK 465 GLY B 198 REMARK 465 ARG B 199 REMARK 465 THR B 200 REMARK 465 VAL B 201 REMARK 465 VAL B 202 REMARK 465 VAL B 203 REMARK 465 LYS B 204 REMARK 465 GLY B 205 REMARK 465 GLU B 206 REMARK 465 VAL B 207 REMARK 465 ASN B 208 REMARK 465 ALA B 209 REMARK 465 ASN B 210 REMARK 465 ALA B 211 REMARK 465 LYS B 212 REMARK 465 SER B 213 REMARK 465 PHE B 214 REMARK 465 ASN B 215 REMARK 465 VAL B 216 REMARK 465 ASP B 217 REMARK 465 LEU B 218 REMARK 465 LEU B 219 REMARK 465 ALA B 220 REMARK 465 GLY B 221 REMARK 465 LYS B 222 REMARK 465 SER B 223 REMARK 465 LYS B 224 REMARK 465 ASP B 225 REMARK 465 ILE B 226 REMARK 465 ALA B 227 REMARK 465 LEU B 228 REMARK 465 HIS B 229 REMARK 465 LEU B 230 REMARK 465 ASN B 231 REMARK 465 PRO B 232 REMARK 465 ARG B 233 REMARK 465 LEU B 234 REMARK 465 ASN B 235 REMARK 465 ILE B 236 REMARK 465 LYS B 237 REMARK 465 ALA B 238 REMARK 465 PHE B 239 REMARK 465 VAL B 240 REMARK 465 ARG B 241 REMARK 465 ASN B 242 REMARK 465 SER B 243 REMARK 465 PHE B 244 REMARK 465 LEU B 245 REMARK 465 GLN B 246 REMARK 465 GLU B 247 REMARK 465 SER B 248 REMARK 465 TRP B 249 REMARK 465 GLY B 250 REMARK 465 GLU B 251 REMARK 465 GLU B 252 REMARK 465 GLU B 253 REMARK 465 ARG B 254 REMARK 465 ASN B 255 REMARK 465 ILE B 256 REMARK 465 THR B 257 REMARK 465 SER B 258 REMARK 465 PHE B 259 REMARK 465 PRO B 260 REMARK 465 PHE B 261 REMARK 465 SER B 262 REMARK 465 PRO B 263 REMARK 465 GLY B 264 REMARK 465 MET B 265 REMARK 465 TYR B 266 REMARK 465 PHE B 267 REMARK 465 GLU B 268 REMARK 465 MET B 269 REMARK 465 ILE B 270 REMARK 465 ILE B 271 REMARK 465 TYR B 272 REMARK 465 CYS B 273 REMARK 465 ASP B 274 REMARK 465 VAL B 275 REMARK 465 ARG B 276 REMARK 465 GLU B 277 REMARK 465 PHE B 278 REMARK 465 LYS B 279 REMARK 465 VAL B 280 REMARK 465 ALA B 281 REMARK 465 VAL B 282 REMARK 465 ASN B 283 REMARK 465 GLY B 284 REMARK 465 VAL B 285 REMARK 465 HIS B 286 REMARK 465 SER B 287 REMARK 465 LEU B 288 REMARK 465 GLU B 289 REMARK 465 TYR B 290 REMARK 465 LYS B 291 REMARK 465 HIS B 292 REMARK 465 ARG B 293 REMARK 465 PHE B 294 REMARK 465 LYS B 295 REMARK 465 GLU B 296 REMARK 465 LEU B 297 REMARK 465 SER B 298 REMARK 465 SER B 299 REMARK 465 ILE B 300 REMARK 465 ASP B 301 REMARK 465 THR B 302 REMARK 465 LEU B 303 REMARK 465 GLU B 304 REMARK 465 ILE B 305 REMARK 465 ASN B 306 REMARK 465 GLY B 307 REMARK 465 ASP B 308 REMARK 465 ILE B 309 REMARK 465 HIS B 310 REMARK 465 LEU B 311 REMARK 465 LEU B 312 REMARK 465 GLU B 313 REMARK 465 VAL B 314 REMARK 465 ARG B 315 REMARK 465 SER B 316 REMARK 465 TRP B 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 505 O HOH B 619 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 104 CD GLU B 104 OE2 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 72 -128.07 59.60 REMARK 500 ARG B 72 -133.66 57.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 88 0.10 SIDE CHAIN REMARK 500 ARG B 45 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8CM8 A 1 317 UNP O00214 LEG8_HUMAN 1 317 DBREF 8CM8 B 1 317 UNP O00214 LEG8_HUMAN 1 317 SEQRES 1 A 317 MET MET LEU SER LEU ASN ASN LEU GLN ASN ILE ILE TYR SEQRES 2 A 317 ASN PRO VAL ILE PRO PHE VAL GLY THR ILE PRO ASP GLN SEQRES 3 A 317 LEU ASP PRO GLY THR LEU ILE VAL ILE ARG GLY HIS VAL SEQRES 4 A 317 PRO SER ASP ALA ASP ARG PHE GLN VAL ASP LEU GLN ASN SEQRES 5 A 317 GLY SER SER MET LYS PRO ARG ALA ASP VAL ALA PHE HIS SEQRES 6 A 317 PHE ASN PRO ARG PHE LYS ARG ALA GLY CYS ILE VAL CYS SEQRES 7 A 317 ASN THR LEU ILE ASN GLU LYS TRP GLY ARG GLU GLU ILE SEQRES 8 A 317 THR TYR ASP THR PRO PHE LYS ARG GLU LYS SER PHE GLU SEQRES 9 A 317 ILE VAL ILE MET VAL LEU LYS ASP LYS PHE GLN VAL ALA SEQRES 10 A 317 VAL ASN GLY LYS HIS THR LEU LEU TYR GLY HIS ARG ILE SEQRES 11 A 317 GLY PRO GLU LYS ILE ASP THR LEU GLY ILE TYR GLY LYS SEQRES 12 A 317 VAL ASN ILE HIS SER ILE GLY PHE SER PHE SER SER ASP SEQRES 13 A 317 LEU GLN SER THR GLN ALA SER SER LEU GLU LEU THR GLU SEQRES 14 A 317 ILE SER ARG GLU ASN VAL PRO LYS SER GLY THR PRO GLN SEQRES 15 A 317 LEU ARG LEU PRO PHE ALA ALA ARG LEU ASN THR PRO MET SEQRES 16 A 317 GLY PRO GLY ARG THR VAL VAL VAL LYS GLY GLU VAL ASN SEQRES 17 A 317 ALA ASN ALA LYS SER PHE ASN VAL ASP LEU LEU ALA GLY SEQRES 18 A 317 LYS SER LYS ASP ILE ALA LEU HIS LEU ASN PRO ARG LEU SEQRES 19 A 317 ASN ILE LYS ALA PHE VAL ARG ASN SER PHE LEU GLN GLU SEQRES 20 A 317 SER TRP GLY GLU GLU GLU ARG ASN ILE THR SER PHE PRO SEQRES 21 A 317 PHE SER PRO GLY MET TYR PHE GLU MET ILE ILE TYR CYS SEQRES 22 A 317 ASP VAL ARG GLU PHE LYS VAL ALA VAL ASN GLY VAL HIS SEQRES 23 A 317 SER LEU GLU TYR LYS HIS ARG PHE LYS GLU LEU SER SER SEQRES 24 A 317 ILE ASP THR LEU GLU ILE ASN GLY ASP ILE HIS LEU LEU SEQRES 25 A 317 GLU VAL ARG SER TRP SEQRES 1 B 317 MET MET LEU SER LEU ASN ASN LEU GLN ASN ILE ILE TYR SEQRES 2 B 317 ASN PRO VAL ILE PRO PHE VAL GLY THR ILE PRO ASP GLN SEQRES 3 B 317 LEU ASP PRO GLY THR LEU ILE VAL ILE ARG GLY HIS VAL SEQRES 4 B 317 PRO SER ASP ALA ASP ARG PHE GLN VAL ASP LEU GLN ASN SEQRES 5 B 317 GLY SER SER MET LYS PRO ARG ALA ASP VAL ALA PHE HIS SEQRES 6 B 317 PHE ASN PRO ARG PHE LYS ARG ALA GLY CYS ILE VAL CYS SEQRES 7 B 317 ASN THR LEU ILE ASN GLU LYS TRP GLY ARG GLU GLU ILE SEQRES 8 B 317 THR TYR ASP THR PRO PHE LYS ARG GLU LYS SER PHE GLU SEQRES 9 B 317 ILE VAL ILE MET VAL LEU LYS ASP LYS PHE GLN VAL ALA SEQRES 10 B 317 VAL ASN GLY LYS HIS THR LEU LEU TYR GLY HIS ARG ILE SEQRES 11 B 317 GLY PRO GLU LYS ILE ASP THR LEU GLY ILE TYR GLY LYS SEQRES 12 B 317 VAL ASN ILE HIS SER ILE GLY PHE SER PHE SER SER ASP SEQRES 13 B 317 LEU GLN SER THR GLN ALA SER SER LEU GLU LEU THR GLU SEQRES 14 B 317 ILE SER ARG GLU ASN VAL PRO LYS SER GLY THR PRO GLN SEQRES 15 B 317 LEU ARG LEU PRO PHE ALA ALA ARG LEU ASN THR PRO MET SEQRES 16 B 317 GLY PRO GLY ARG THR VAL VAL VAL LYS GLY GLU VAL ASN SEQRES 17 B 317 ALA ASN ALA LYS SER PHE ASN VAL ASP LEU LEU ALA GLY SEQRES 18 B 317 LYS SER LYS ASP ILE ALA LEU HIS LEU ASN PRO ARG LEU SEQRES 19 B 317 ASN ILE LYS ALA PHE VAL ARG ASN SER PHE LEU GLN GLU SEQRES 20 B 317 SER TRP GLY GLU GLU GLU ARG ASN ILE THR SER PHE PRO SEQRES 21 B 317 PHE SER PRO GLY MET TYR PHE GLU MET ILE ILE TYR CYS SEQRES 22 B 317 ASP VAL ARG GLU PHE LYS VAL ALA VAL ASN GLY VAL HIS SEQRES 23 B 317 SER LEU GLU TYR LYS HIS ARG PHE LYS GLU LEU SER SER SEQRES 24 B 317 ILE ASP THR LEU GLU ILE ASN GLY ASP ILE HIS LEU LEU SEQRES 25 B 317 GLU VAL ARG SER TRP HET V19 A 401 48 HET CL A 402 1 HET V19 B 401 48 HETNAM V19 4-(4-BROMOPHENYL)-2-[[(2~{R},3~{R},4~{R})-2- HETNAM 2 V19 (HYDROXYMETHYL)-3-OXIDANYL-3,4-DIHYDRO-2~{H}-PYRAN-4- HETNAM 3 V19 YL]OXYMETHYL]PHTHALAZIN-1-ONE HETNAM CL CHLORIDE ION FORMUL 3 V19 2(C21 H19 BR N2 O5) FORMUL 4 CL CL 1- FORMUL 6 HOH *289(H2 O) HELIX 1 AA1 GLY A 131 ILE A 135 5 5 HELIX 2 AA2 GLY B 131 ILE B 135 5 5 SHEET 1 AA1 6 GLN A 9 TYR A 13 0 SHEET 2 AA1 6 ASN A 145 SER A 152 -1 O PHE A 151 N GLN A 9 SHEET 3 AA1 6 LEU A 32 HIS A 38 -1 N HIS A 38 O ASN A 145 SHEET 4 AA1 6 SER A 102 VAL A 109 -1 O ILE A 105 N ILE A 35 SHEET 5 AA1 6 LYS A 113 VAL A 118 -1 O GLN A 115 N MET A 108 SHEET 6 AA1 6 LYS A 121 GLY A 127 -1 O LEU A 124 N VAL A 116 SHEET 1 AA2 6 PHE A 19 THR A 22 0 SHEET 2 AA2 6 THR A 137 GLY A 142 -1 O LEU A 138 N GLY A 21 SHEET 3 AA2 6 PHE A 46 GLN A 51 -1 N ASP A 49 O GLY A 139 SHEET 4 AA2 6 VAL A 62 ARG A 69 -1 O PHE A 64 N LEU A 50 SHEET 5 AA2 6 CYS A 75 ILE A 82 -1 O CYS A 75 N ARG A 69 SHEET 6 AA2 6 LYS A 85 TRP A 86 -1 O LYS A 85 N ILE A 82 SHEET 1 AA3 6 PHE A 19 THR A 22 0 SHEET 2 AA3 6 THR A 137 GLY A 142 -1 O LEU A 138 N GLY A 21 SHEET 3 AA3 6 PHE A 46 GLN A 51 -1 N ASP A 49 O GLY A 139 SHEET 4 AA3 6 VAL A 62 ARG A 69 -1 O PHE A 64 N LEU A 50 SHEET 5 AA3 6 CYS A 75 ILE A 82 -1 O CYS A 75 N ARG A 69 SHEET 6 AA3 6 GLU A 90 THR A 92 -1 O THR A 92 N ILE A 76 SHEET 1 AA4 6 GLN B 9 TYR B 13 0 SHEET 2 AA4 6 ASN B 145 SER B 152 -1 O PHE B 151 N GLN B 9 SHEET 3 AA4 6 LEU B 32 HIS B 38 -1 N VAL B 34 O GLY B 150 SHEET 4 AA4 6 SER B 102 VAL B 109 -1 O ILE B 105 N ILE B 35 SHEET 5 AA4 6 LYS B 113 VAL B 118 -1 O ALA B 117 N VAL B 106 SHEET 6 AA4 6 LYS B 121 GLY B 127 -1 O THR B 123 N VAL B 116 SHEET 1 AA5 6 PHE B 19 THR B 22 0 SHEET 2 AA5 6 THR B 137 GLY B 142 -1 O LEU B 138 N GLY B 21 SHEET 3 AA5 6 PHE B 46 ASN B 52 -1 N ASP B 49 O GLY B 139 SHEET 4 AA5 6 ASP B 61 ARG B 69 -1 O ASP B 61 N ASN B 52 SHEET 5 AA5 6 CYS B 75 ILE B 82 -1 O CYS B 75 N ARG B 69 SHEET 6 AA5 6 LYS B 85 TRP B 86 -1 O LYS B 85 N ILE B 82 SHEET 1 AA6 6 PHE B 19 THR B 22 0 SHEET 2 AA6 6 THR B 137 GLY B 142 -1 O LEU B 138 N GLY B 21 SHEET 3 AA6 6 PHE B 46 ASN B 52 -1 N ASP B 49 O GLY B 139 SHEET 4 AA6 6 ASP B 61 ARG B 69 -1 O ASP B 61 N ASN B 52 SHEET 5 AA6 6 CYS B 75 ILE B 82 -1 O CYS B 75 N ARG B 69 SHEET 6 AA6 6 GLU B 90 THR B 92 -1 O THR B 92 N ILE B 76 CISPEP 1 ILE A 17 PRO A 18 0 4.78 CISPEP 2 LYS A 57 PRO A 58 0 -6.92 CISPEP 3 ILE B 17 PRO B 18 0 3.35 CISPEP 4 LYS B 57 PRO B 58 0 -4.97 CRYST1 54.710 62.280 84.750 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011799 0.00000