HEADER HYDROLASE 21-FEB-23 8CMR TITLE LINEAR SPECIFIC OTU-TYPE DUB SNOTU FROM THE PATHOGEN S. NEGENVENSIS IN TITLE 2 COMPLEX WITH LINEAR DI-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OTU DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: POLYUBIQUITIN-B; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: IN THE CRYSTAL STRUCTURE THERE IS DOMAIN SWAPPING LIKELY COMPND 10 OCCURRING. THE TWO UBIQUITIN UNITS OF CHAINS B OR D ARE SPREAD OVER COMPND 11 TWO DUB MOLECULES (A OR C). A BIOLOGICAL ASSEMBLY, FOR EXAMPLE, WOULD COMPND 12 MORE LIKELY BE CHAIN A/CHAIN B:77-152 LINKED VIA PEPTIDE BOND FROM COMPND 13 B152 TO D1 TO CHAIN D, RESIDUES 1-76.; COMPND 14 SYNONYM: CDNA FLJ51326,HIGHLY SIMILAR TO HOMO SAPIENS UBIQUITIN B COMPND 15 (UBB),MRNA; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMKANIA NEGEVENSIS Z; SOURCE 3 ORGANISM_TAXID: 331113; SOURCE 4 GENE: SNE_A17630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: POPINS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEUBIQUITINASE, PAPAIN-FOLD, OTU, HYDROLASE, SWAPPED COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.UTHOFF,T.HERMANNS,V.BOLL,K.HOFMANN,U.BAUMANN REVDAT 1 22-NOV-23 8CMR 0 JRNL AUTH V.BOLL,T.HERMANNS,M.UTHOFF,I.ERVEN,E.M.HORNER, JRNL AUTH 2 V.KOZJAK-PAVLOVIC,U.BAUMANN,K.HOFMANN JRNL TITL FUNCTIONAL AND STRUCTURAL DIVERSITY IN DEUBIQUITINASES OF JRNL TITL 2 THE CHLAMYDIA-LIKE BACTERIUM SIMKANIA NEGEVENSIS. JRNL REF NAT COMMUN V. 14 7335 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37957213 JRNL DOI 10.1038/S41467-023-43144-Y REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.490 REMARK 3 FREE R VALUE TEST SET COUNT : 1339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0600 - 4.8300 1.00 5344 141 0.1397 0.1549 REMARK 3 2 4.8200 - 3.8300 1.00 5264 136 0.1499 0.1884 REMARK 3 3 3.8300 - 3.3500 1.00 5280 130 0.2048 0.2432 REMARK 3 4 3.3500 - 3.0400 1.00 5233 135 0.2458 0.2323 REMARK 3 5 3.0400 - 2.8200 1.00 5196 128 0.2515 0.2633 REMARK 3 6 2.8200 - 2.6600 1.00 5233 138 0.2796 0.2969 REMARK 3 7 2.6600 - 2.5200 1.00 5253 132 0.2571 0.2960 REMARK 3 8 2.5200 - 2.4100 1.00 5201 131 0.2738 0.2754 REMARK 3 9 2.4100 - 2.3200 1.00 5203 133 0.3024 0.2942 REMARK 3 10 2.3200 - 2.2400 1.00 5184 135 0.3395 0.4116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.878 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6302 REMARK 3 ANGLE : 0.472 8508 REMARK 3 CHIRALITY : 0.041 991 REMARK 3 PLANARITY : 0.003 1095 REMARK 3 DIHEDRAL : 13.829 2426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 242) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6242 -55.7667 -2.0568 REMARK 3 T TENSOR REMARK 3 T11: 0.4590 T22: 0.4916 REMARK 3 T33: 0.5257 T12: 0.0103 REMARK 3 T13: 0.0515 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.4325 L22: 0.6795 REMARK 3 L33: 1.2271 L12: -0.1468 REMARK 3 L13: 0.6313 L23: -0.1029 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.1329 S13: 0.0408 REMARK 3 S21: 0.0471 S22: -0.0036 S23: -0.0257 REMARK 3 S31: -0.0716 S32: 0.1876 S33: 0.0656 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 152) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9834 -61.4507 28.2815 REMARK 3 T TENSOR REMARK 3 T11: 0.5115 T22: 0.6829 REMARK 3 T33: 0.5724 T12: -0.0458 REMARK 3 T13: 0.0404 T23: -0.0728 REMARK 3 L TENSOR REMARK 3 L11: 0.3955 L22: 0.7365 REMARK 3 L33: 1.4804 L12: -0.5460 REMARK 3 L13: -0.7829 L23: 1.0554 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0002 S13: -0.1318 REMARK 3 S21: 0.0834 S22: -0.1935 S23: -0.0308 REMARK 3 S31: 0.1058 S32: -0.3442 S33: 0.2244 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 3 THROUGH 242) REMARK 3 ORIGIN FOR THE GROUP (A): -48.8916 -32.7231 31.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.4539 T22: 0.6589 REMARK 3 T33: 0.5095 T12: -0.0182 REMARK 3 T13: 0.0145 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 1.3184 L22: 1.2504 REMARK 3 L33: 1.9812 L12: -0.4396 REMARK 3 L13: 0.4385 L23: -0.3086 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: -0.2972 S13: 0.0112 REMARK 3 S21: 0.0900 S22: 0.0477 S23: -0.0393 REMARK 3 S31: 0.0688 S32: -0.1485 S33: 0.0191 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 152) REMARK 3 ORIGIN FOR THE GROUP (A): -44.5837 -48.9069 0.3014 REMARK 3 T TENSOR REMARK 3 T11: 0.6288 T22: 0.4394 REMARK 3 T33: 0.5801 T12: -0.0063 REMARK 3 T13: 0.0048 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.1842 L22: 0.2735 REMARK 3 L33: 2.6402 L12: -0.3022 REMARK 3 L13: -1.4666 L23: 0.8279 REMARK 3 S TENSOR REMARK 3 S11: -0.0984 S12: -0.1634 S13: 0.0384 REMARK 3 S21: 0.0968 S22: 0.0114 S23: -0.0455 REMARK 3 S31: 0.4736 S32: 0.0061 S33: 0.1191 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid 3 through 242) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 100 or REMARK 3 resid 102 through 152)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 1 through 72 or REMARK 3 resid 75 through 100 or resid 102 through REMARK 3 152)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292126444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 BUILT=20210323 REMARK 200 DATA SCALING SOFTWARE : XSCALE FEB 5, 2021 REMARK 200 BUILT=20210323 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 1.97200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: ALPHAFOLD2; CUSTOM VERSION REMARK 200 (HTTPS://GITHUB.COM/MUTHOFF/COMPLEXFOLD) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEINS WERE PURIFIED IN 20 MM REMARK 280 TRIS PH 7.5, 150 MM NACL, 2MM DTT AND MIXED IN A 1:1.1 (PROTEASE: REMARK 280 UBIQUITIN) RATIO. RESERVOIR: 0.2 M MAGNESIUM FORMAT DIHYDRATE, REMARK 280 20 % W/V PEG 3350, 0.02 M EDTA PROTEIN AND RESERVOIR WERE MIXED REMARK 280 IN A RATIO OF 1 UL : 2 UL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.32400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.64800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.98600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.31000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.66200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 243 REMARK 465 LYS A 244 REMARK 465 SER A 245 REMARK 465 ILE A 246 REMARK 465 GLU A 247 REMARK 465 GLU A 248 REMARK 465 ARG A 249 REMARK 465 THR A 250 REMARK 465 ASN A 251 REMARK 465 GLU A 252 REMARK 465 LEU A 253 REMARK 465 GLY A 254 REMARK 465 LYS A 255 REMARK 465 ASP A 256 REMARK 465 ARG A 257 REMARK 465 ILE A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 ALA A 262 REMARK 465 ASP A 263 REMARK 465 VAL A 264 REMARK 465 PRO A 265 REMARK 465 PRO A 266 REMARK 465 MET A 267 REMARK 465 THR A 268 REMARK 465 GLN A 269 REMARK 465 SER A 270 REMARK 465 VAL A 271 REMARK 465 THR A 272 REMARK 465 GLN A 273 REMARK 465 GLU A 274 REMARK 465 SER A 275 REMARK 465 PHE A 276 REMARK 465 SER A 277 REMARK 465 ARG A 278 REMARK 465 LYS A 279 REMARK 465 TRP A 280 REMARK 465 LEU A 281 REMARK 465 PHE A 282 REMARK 465 ALA A 283 REMARK 465 LEU A 284 REMARK 465 LEU A 285 REMARK 465 ALA A 286 REMARK 465 LEU A 287 REMARK 465 ALA A 288 REMARK 465 ILE A 289 REMARK 465 LEU A 290 REMARK 465 GLY A 291 REMARK 465 ALA A 292 REMARK 465 LEU A 293 REMARK 465 TYR A 294 REMARK 465 TYR A 295 REMARK 465 PHE A 296 REMARK 465 PHE A 297 REMARK 465 ASN A 298 REMARK 465 LYS A 299 REMARK 465 ASN A 300 REMARK 465 LEU B 73 REMARK 465 ARG B 74 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 243 REMARK 465 LYS C 244 REMARK 465 SER C 245 REMARK 465 ILE C 246 REMARK 465 GLU C 247 REMARK 465 GLU C 248 REMARK 465 ARG C 249 REMARK 465 THR C 250 REMARK 465 ASN C 251 REMARK 465 GLU C 252 REMARK 465 LEU C 253 REMARK 465 GLY C 254 REMARK 465 LYS C 255 REMARK 465 ASP C 256 REMARK 465 ARG C 257 REMARK 465 ILE C 258 REMARK 465 SER C 259 REMARK 465 SER C 260 REMARK 465 PRO C 261 REMARK 465 ALA C 262 REMARK 465 ASP C 263 REMARK 465 VAL C 264 REMARK 465 PRO C 265 REMARK 465 PRO C 266 REMARK 465 MET C 267 REMARK 465 THR C 268 REMARK 465 GLN C 269 REMARK 465 SER C 270 REMARK 465 VAL C 271 REMARK 465 THR C 272 REMARK 465 GLN C 273 REMARK 465 GLU C 274 REMARK 465 SER C 275 REMARK 465 PHE C 276 REMARK 465 SER C 277 REMARK 465 ARG C 278 REMARK 465 LYS C 279 REMARK 465 TRP C 280 REMARK 465 LEU C 281 REMARK 465 PHE C 282 REMARK 465 ALA C 283 REMARK 465 LEU C 284 REMARK 465 LEU C 285 REMARK 465 ALA C 286 REMARK 465 LEU C 287 REMARK 465 ALA C 288 REMARK 465 ILE C 289 REMARK 465 LEU C 290 REMARK 465 GLY C 291 REMARK 465 ALA C 292 REMARK 465 LEU C 293 REMARK 465 TYR C 294 REMARK 465 TYR C 295 REMARK 465 PHE C 296 REMARK 465 PHE C 297 REMARK 465 ASN C 298 REMARK 465 LYS C 299 REMARK 465 ASN C 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 210 NZ LYS C 56 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 133 O ARG D 74 4445 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 -167.89 -101.82 REMARK 500 THR A 51 -30.53 -134.72 REMARK 500 ALA A 232 -148.71 60.16 REMARK 500 ASN B 60 50.08 31.38 REMARK 500 GLU B 64 -3.46 70.87 REMARK 500 ARG B 148 -81.94 -93.31 REMARK 500 THR C 23 -167.39 -102.08 REMARK 500 THR C 51 -30.73 -135.48 REMARK 500 ALA C 232 -149.28 60.99 REMARK 500 ASN D 60 51.09 28.90 REMARK 500 GLU D 64 -3.08 70.28 REMARK 500 ARG D 148 -81.96 -93.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CMR A 1 300 UNP F8L9T9 F8L9T9_SIMNZ 1 300 DBREF 8CMR B 1 152 UNP B4DV12 B4DV12_HUMAN 1 152 DBREF 8CMR C 1 300 UNP F8L9T9 F8L9T9_SIMNZ 1 300 DBREF 8CMR D 1 152 UNP B4DV12 B4DV12_HUMAN 1 152 SEQADV 8CMR ALA A 82 UNP F8L9T9 CYS 82 ENGINEERED MUTATION SEQADV 8CMR ALA C 82 UNP F8L9T9 CYS 82 ENGINEERED MUTATION SEQRES 1 A 300 MET SER LEU PRO VAL LYS GLU ARG PRO ASP ALA ILE TYR SEQRES 2 A 300 THR PHE GLU GLY LYS THR TYR GLU ASN THR SER PHE SER SEQRES 3 A 300 LYS THR GLY ILE PRO ILE VAL GLY GLN PRO LEU LYS MET SEQRES 4 A 300 GLU ALA TYR VAL HIS LYS GLU TYR THR HIS VAL THR SER SEQRES 5 A 300 LEU GLU GLY LYS ARG PHE LYS SER GLN LEU GLU GLU ALA SEQRES 6 A 300 ALA LYS ILE TYR GLY GLU GLN LEU HIS GLU ILE GLN GLY SEQRES 7 A 300 ASP GLY ASN ALA LEU THR THR ALA PHE ALA THR SER PHE SEQRES 8 A 300 LEU TYR LEU LEU ASN GLY ASN ALA THR LEU ILE ALA THR SEQRES 9 A 300 PHE ASP ASN ILE LEU ILE GLY LEU ASP ALA HIS LYS ASN SEQRES 10 A 300 ILE PRO PRO VAL ARG GLN THR ILE GLU LYS LEU LYS VAL SEQRES 11 A 300 LYS ASN ASP LEU GLU LEU LYS GLN ILE LEU ALA SER ASN SEQRES 12 A 300 GLU THR MET PHE ALA PHE SER SER VAL ILE ARG HIS LEU SEQRES 13 A 300 ALA ARG GLN LYS LEU PRO GLU LEU GLY GLU PRO PHE SER SEQRES 14 A 300 LEU LEU ILE ASP GLU MET VAL PRO GLU GLU ASP GLY LYS SEQRES 15 A 300 GLU ILE GLU ILE ALA CYS ILE GLY GLY LEU CYS GLN LEU SEQRES 16 A 300 LEU ASN ILE CYS ALA ASP VAL ILE TYR LEU ARG LYS ASP SEQRES 17 A 300 TYR ASP THR PHE LYS ILE GLU ARG TYR PRO ASN GLU THR SEQRES 18 A 300 GLY LYS PRO ASP LEU VAL ILE LEU ARG LYS ALA ALA HIS SEQRES 19 A 300 PHE LEU SER ILE ILE LEU ASP SER LYS LYS SER ILE GLU SEQRES 20 A 300 GLU ARG THR ASN GLU LEU GLY LYS ASP ARG ILE SER SER SEQRES 21 A 300 PRO ALA ASP VAL PRO PRO MET THR GLN SER VAL THR GLN SEQRES 22 A 300 GLU SER PHE SER ARG LYS TRP LEU PHE ALA LEU LEU ALA SEQRES 23 A 300 LEU ALA ILE LEU GLY ALA LEU TYR TYR PHE PHE ASN LYS SEQRES 24 A 300 ASN SEQRES 1 B 152 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 152 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 152 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 152 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 152 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 152 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 7 B 152 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 B 152 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 B 152 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 B 152 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 B 152 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU SEQRES 12 B 152 HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 300 MET SER LEU PRO VAL LYS GLU ARG PRO ASP ALA ILE TYR SEQRES 2 C 300 THR PHE GLU GLY LYS THR TYR GLU ASN THR SER PHE SER SEQRES 3 C 300 LYS THR GLY ILE PRO ILE VAL GLY GLN PRO LEU LYS MET SEQRES 4 C 300 GLU ALA TYR VAL HIS LYS GLU TYR THR HIS VAL THR SER SEQRES 5 C 300 LEU GLU GLY LYS ARG PHE LYS SER GLN LEU GLU GLU ALA SEQRES 6 C 300 ALA LYS ILE TYR GLY GLU GLN LEU HIS GLU ILE GLN GLY SEQRES 7 C 300 ASP GLY ASN ALA LEU THR THR ALA PHE ALA THR SER PHE SEQRES 8 C 300 LEU TYR LEU LEU ASN GLY ASN ALA THR LEU ILE ALA THR SEQRES 9 C 300 PHE ASP ASN ILE LEU ILE GLY LEU ASP ALA HIS LYS ASN SEQRES 10 C 300 ILE PRO PRO VAL ARG GLN THR ILE GLU LYS LEU LYS VAL SEQRES 11 C 300 LYS ASN ASP LEU GLU LEU LYS GLN ILE LEU ALA SER ASN SEQRES 12 C 300 GLU THR MET PHE ALA PHE SER SER VAL ILE ARG HIS LEU SEQRES 13 C 300 ALA ARG GLN LYS LEU PRO GLU LEU GLY GLU PRO PHE SER SEQRES 14 C 300 LEU LEU ILE ASP GLU MET VAL PRO GLU GLU ASP GLY LYS SEQRES 15 C 300 GLU ILE GLU ILE ALA CYS ILE GLY GLY LEU CYS GLN LEU SEQRES 16 C 300 LEU ASN ILE CYS ALA ASP VAL ILE TYR LEU ARG LYS ASP SEQRES 17 C 300 TYR ASP THR PHE LYS ILE GLU ARG TYR PRO ASN GLU THR SEQRES 18 C 300 GLY LYS PRO ASP LEU VAL ILE LEU ARG LYS ALA ALA HIS SEQRES 19 C 300 PHE LEU SER ILE ILE LEU ASP SER LYS LYS SER ILE GLU SEQRES 20 C 300 GLU ARG THR ASN GLU LEU GLY LYS ASP ARG ILE SER SER SEQRES 21 C 300 PRO ALA ASP VAL PRO PRO MET THR GLN SER VAL THR GLN SEQRES 22 C 300 GLU SER PHE SER ARG LYS TRP LEU PHE ALA LEU LEU ALA SEQRES 23 C 300 LEU ALA ILE LEU GLY ALA LEU TYR TYR PHE PHE ASN LYS SEQRES 24 C 300 ASN SEQRES 1 D 152 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 152 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 152 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 152 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 152 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 152 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 7 D 152 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 D 152 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 D 152 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 D 152 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 D 152 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU SEQRES 12 D 152 HIS LEU VAL LEU ARG LEU ARG GLY GLY FORMUL 5 HOH *96(H2 O) HELIX 1 AA1 PRO A 4 ARG A 8 5 5 HELIX 2 AA2 SER A 24 GLY A 29 1 6 HELIX 3 AA3 MET A 39 TYR A 47 1 9 HELIX 4 AA4 SER A 52 GLY A 70 1 19 HELIX 5 AA5 ASN A 81 ASN A 96 1 16 HELIX 6 AA6 ASN A 98 LEU A 112 1 15 HELIX 7 AA7 ASN A 117 LYS A 127 1 11 HELIX 8 AA8 ASN A 132 SER A 142 1 11 HELIX 9 AA9 SER A 142 LEU A 161 1 20 HELIX 10 AB1 PRO A 162 GLY A 165 5 4 HELIX 11 AB2 PRO A 167 VAL A 176 1 10 HELIX 12 AB3 ILE A 186 ASN A 197 1 12 HELIX 13 AB4 THR B 22 GLY B 35 1 14 HELIX 14 AB5 PRO B 37 GLN B 41 5 5 HELIX 15 AB6 THR B 98 GLY B 111 1 14 HELIX 16 AB7 PRO B 113 ASP B 115 5 3 HELIX 17 AB8 LEU B 132 ASN B 136 5 5 HELIX 18 AB9 PRO C 4 ARG C 8 5 5 HELIX 19 AC1 SER C 24 GLY C 29 1 6 HELIX 20 AC2 MET C 39 TYR C 47 1 9 HELIX 21 AC3 SER C 52 GLY C 70 1 19 HELIX 22 AC4 ASN C 81 ASN C 96 1 16 HELIX 23 AC5 ASN C 98 LEU C 112 1 15 HELIX 24 AC6 ASN C 117 LYS C 127 1 11 HELIX 25 AC7 ASN C 132 SER C 142 1 11 HELIX 26 AC8 SER C 142 LEU C 161 1 20 HELIX 27 AC9 PRO C 162 GLY C 165 5 4 HELIX 28 AD1 PRO C 167 VAL C 176 1 10 HELIX 29 AD2 ILE C 186 ASN C 197 1 12 HELIX 30 AD3 THR D 22 GLY D 35 1 14 HELIX 31 AD4 PRO D 37 GLN D 41 5 5 HELIX 32 AD5 THR D 98 GLY D 111 1 14 HELIX 33 AD6 PRO D 113 ASP D 115 5 3 HELIX 34 AD7 LEU D 132 ASN D 136 5 5 SHEET 1 AA1 2 ILE A 12 PHE A 15 0 SHEET 2 AA1 2 LYS A 18 GLU A 21 -1 O TYR A 20 N TYR A 13 SHEET 1 AA2 6 LEU A 37 LYS A 38 0 SHEET 2 AA2 6 GLN A 72 HIS A 74 -1 O LEU A 73 N LEU A 37 SHEET 3 AA2 6 PHE A 235 ILE A 239 -1 O SER A 237 N HIS A 74 SHEET 4 AA2 6 LEU A 226 ARG A 230 -1 N LEU A 229 O LEU A 236 SHEET 5 AA2 6 ALA A 200 TYR A 204 1 N ILE A 203 O ARG A 230 SHEET 6 AA2 6 LYS A 213 TYR A 217 -1 O GLU A 215 N VAL A 202 SHEET 1 AA3 5 THR B 12 GLU B 16 0 SHEET 2 AA3 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA3 5 THR B 66 LEU B 69 1 O LEU B 69 N LYS B 6 SHEET 4 AA3 5 LEU B 43 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA3 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA4 5 THR B 88 VAL B 93 0 SHEET 2 AA4 5 MET B 77 LYS B 82 -1 N MET B 77 O VAL B 93 SHEET 3 AA4 5 THR B 142 LEU B 147 1 O LEU B 143 N PHE B 80 SHEET 4 AA4 5 GLN B 117 PHE B 121 -1 N ARG B 118 O VAL B 146 SHEET 5 AA4 5 LYS B 124 GLN B 125 -1 O LYS B 124 N PHE B 121 SHEET 1 AA5 2 ILE C 12 PHE C 15 0 SHEET 2 AA5 2 LYS C 18 GLU C 21 -1 O TYR C 20 N TYR C 13 SHEET 1 AA6 6 LEU C 37 LYS C 38 0 SHEET 2 AA6 6 GLN C 72 HIS C 74 -1 O LEU C 73 N LEU C 37 SHEET 3 AA6 6 PHE C 235 ILE C 239 -1 O SER C 237 N HIS C 74 SHEET 4 AA6 6 LEU C 226 ARG C 230 -1 N LEU C 229 O LEU C 236 SHEET 5 AA6 6 ALA C 200 TYR C 204 1 N ILE C 203 O ARG C 230 SHEET 6 AA6 6 LYS C 213 TYR C 217 -1 O LYS C 213 N TYR C 204 SHEET 1 AA7 5 THR D 12 GLU D 16 0 SHEET 2 AA7 5 GLN D 2 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 AA7 5 THR D 66 LEU D 69 1 O LEU D 67 N PHE D 4 SHEET 4 AA7 5 LEU D 43 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 AA7 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 SHEET 1 AA8 5 THR D 88 VAL D 93 0 SHEET 2 AA8 5 MET D 77 LYS D 82 -1 N VAL D 81 O ILE D 89 SHEET 3 AA8 5 THR D 142 LEU D 147 1 O LEU D 143 N PHE D 80 SHEET 4 AA8 5 GLN D 117 PHE D 121 -1 N ARG D 118 O VAL D 146 SHEET 5 AA8 5 LYS D 124 GLN D 125 -1 O LYS D 124 N PHE D 121 CISPEP 1 GLU A 166 PRO A 167 0 1.74 CISPEP 2 TYR A 217 PRO A 218 0 0.18 CISPEP 3 GLU C 166 PRO C 167 0 2.42 CISPEP 4 TYR C 217 PRO C 218 0 0.40 CRYST1 154.618 154.618 81.972 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006468 0.003734 0.000000 0.00000 SCALE2 0.000000 0.007468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012199 0.00000