HEADER TRANSFERASE 22-FEB-23 8CNB TITLE CRYSTAL STRUCTURE OF CREBBP-Y1503C HISTONE ACETYLTRANSFERASE DOMAIN IN TITLE 2 COMPLEX WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CREBBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MECHALY,W.ZHANG,A.HAOUZ,M.GREEN,F.RODRIGUES-LIMA REVDAT 2 06-NOV-24 8CNB 1 REMARK REVDAT 1 06-MAR-24 8CNB 0 JRNL AUTH A.E.MECHALY,W.ZHANG,A.HAOUZ,M.GREEN,F.RODRIGUES-LIMA JRNL TITL CRYSTAL STRUCTURE OF CREBBP-Y1503C HISTONE ACETYLTRANSFERASE JRNL TITL 2 DOMAIN IN COMPLEX WITH COENZYME A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 49.9 REMARK 3 NUMBER OF REFLECTIONS : 34040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1000 - 4.5300 1.00 5661 275 0.2287 0.2694 REMARK 3 2 4.5300 - 3.6000 0.88 4777 269 0.2159 0.2807 REMARK 3 3 3.6000 - 3.1400 0.99 5374 289 0.2775 0.3460 REMARK 3 4 3.1400 - 2.8600 0.84 4501 257 0.3214 0.3770 REMARK 3 5 2.8600 - 2.6500 0.68 3704 163 0.3555 0.4085 REMARK 3 6 2.6500 - 2.5000 0.55 2926 167 0.3523 0.3726 REMARK 3 7 2.5000 - 2.3700 0.40 2170 117 0.3598 0.4301 REMARK 3 8 2.3700 - 2.2700 0.27 1455 86 0.3645 0.3876 REMARK 3 9 2.2700 - 2.1800 0.18 977 45 0.3695 0.3498 REMARK 3 10 2.1800 - 2.1100 0.11 567 28 0.3577 0.4313 REMARK 3 11 2.1000 - 2.0400 0.03 152 4 0.3870 0.5453 REMARK 3 12 2.0400 - 1.9860 0.01 72 4 0.5463 0.5995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 47.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4585 REMARK 3 ANGLE : 1.852 6205 REMARK 3 CHIRALITY : 0.112 640 REMARK 3 PLANARITY : 0.011 808 REMARK 3 DIHEDRAL : 9.386 621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1389:1483 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.998 38.456 21.296 REMARK 3 T TENSOR REMARK 3 T11: 0.2965 T22: 0.6889 REMARK 3 T33: 0.2989 T12: -0.0646 REMARK 3 T13: 0.0185 T23: 0.3537 REMARK 3 L TENSOR REMARK 3 L11: 2.2276 L22: 0.8929 REMARK 3 L33: 1.7191 L12: -0.3098 REMARK 3 L13: -1.1206 L23: -0.8378 REMARK 3 S TENSOR REMARK 3 S11: 0.0593 S12: 1.2027 S13: 0.3493 REMARK 3 S21: -0.2015 S22: 0.2906 S23: 0.3138 REMARK 3 S31: 0.1653 S32: -1.0089 S33: -0.3276 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 1484:1698 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.494 44.967 21.639 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.7950 REMARK 3 T33: 0.4549 T12: 0.1813 REMARK 3 T13: -0.0028 T23: 0.7657 REMARK 3 L TENSOR REMARK 3 L11: 1.2803 L22: 0.2955 REMARK 3 L33: 0.8284 L12: -0.3471 REMARK 3 L13: -0.4887 L23: -0.2696 REMARK 3 S TENSOR REMARK 3 S11: 0.1675 S12: 0.8274 S13: 0.2930 REMARK 3 S21: -0.2509 S22: 0.0830 S23: 0.5814 REMARK 3 S31: -0.0997 S32: -1.0389 S33: -0.5006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 1699:1745 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.427 18.913 33.938 REMARK 3 T TENSOR REMARK 3 T11: 0.8298 T22: 1.4559 REMARK 3 T33: 1.3050 T12: -0.3996 REMARK 3 T13: -0.3812 T23: 0.5058 REMARK 3 L TENSOR REMARK 3 L11: 0.5714 L22: 0.9163 REMARK 3 L33: 2.1694 L12: -0.4556 REMARK 3 L13: 0.7783 L23: 0.1503 REMARK 3 S TENSOR REMARK 3 S11: 0.5998 S12: 0.0537 S13: -0.9013 REMARK 3 S21: 0.1031 S22: 0.1616 S23: 0.6690 REMARK 3 S31: 1.0464 S32: -1.2814 S33: -0.7119 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 1076:1135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.171 56.494 9.494 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.7355 REMARK 3 T33: 0.2525 T12: 0.0725 REMARK 3 T13: 0.0976 T23: 0.3608 REMARK 3 L TENSOR REMARK 3 L11: 0.8288 L22: 3.2754 REMARK 3 L33: 2.6203 L12: -0.1796 REMARK 3 L13: 0.6695 L23: -1.0357 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.1547 S13: -0.2610 REMARK 3 S21: 0.4296 S22: -0.2566 S23: -0.4528 REMARK 3 S31: 0.0369 S32: 0.6094 S33: 0.2917 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 1136:1296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.261 51.525 12.957 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.4723 REMARK 3 T33: 0.1706 T12: 0.1513 REMARK 3 T13: 0.0051 T23: 0.2559 REMARK 3 L TENSOR REMARK 3 L11: 1.1804 L22: 2.9498 REMARK 3 L33: 2.2930 L12: 0.8462 REMARK 3 L13: -0.4257 L23: -1.2268 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: 0.0351 S13: -0.0677 REMARK 3 S21: 0.1799 S22: -0.2565 S23: -0.1901 REMARK 3 S31: -0.1292 S32: 0.4387 S33: 0.1947 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 1297:1349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.624 27.575 22.877 REMARK 3 T TENSOR REMARK 3 T11: 0.5927 T22: 0.3052 REMARK 3 T33: 0.6596 T12: 0.1237 REMARK 3 T13: 0.0942 T23: 0.2074 REMARK 3 L TENSOR REMARK 3 L11: 6.5966 L22: 0.6577 REMARK 3 L33: 1.7779 L12: -1.0689 REMARK 3 L13: -1.3923 L23: -0.6262 REMARK 3 S TENSOR REMARK 3 S11: -0.2443 S12: 0.4783 S13: -1.2758 REMARK 3 S21: -0.2338 S22: -0.1558 S23: -0.3226 REMARK 3 S31: 0.7665 S32: 0.1654 S33: -0.2675 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 1350:1388 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.922 41.708 29.421 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 0.5642 REMARK 3 T33: 0.5360 T12: 0.0416 REMARK 3 T13: 0.0564 T23: 0.4114 REMARK 3 L TENSOR REMARK 3 L11: 4.9411 L22: 3.5997 REMARK 3 L33: 0.6645 L12: -1.2024 REMARK 3 L13: -0.6158 L23: -0.5593 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.5497 S13: -0.0569 REMARK 3 S21: -0.0752 S22: 0.3616 S23: 0.7506 REMARK 3 S31: -0.2584 S32: -0.8917 S33: -0.2245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34049 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.986 REMARK 200 RESOLUTION RANGE LOW (A) : 53.732 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,2 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 20 % W/V POLYETHYLENE GLYCOL 3,350, PH 8.2, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.33450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.40950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.72000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.33450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.40950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.72000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.33450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.40950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.72000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.33450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.40950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1211 REMARK 465 CYS A 1212 REMARK 465 CYS A 1213 REMARK 465 TYR A 1214 REMARK 465 GLY A 1215 REMARK 465 LYS A 1216 REMARK 465 GLN A 1217 REMARK 465 LEU A 1218 REMARK 465 CYS A 1219 REMARK 465 THR A 1220 REMARK 465 ILE A 1221 REMARK 465 PRO A 1222 REMARK 465 ARG A 1223 REMARK 465 ASP A 1224 REMARK 465 ALA A 1225 REMARK 465 ALA A 1226 REMARK 465 TYR A 1227 REMARK 465 TYR A 1228 REMARK 465 SER A 1229 REMARK 465 TYR A 1230 REMARK 465 GLN A 1231 REMARK 465 ASN A 1232 REMARK 465 ARG A 1233 REMARK 465 TYR A 1234 REMARK 465 HIS A 1235 REMARK 465 PHE A 1236 REMARK 465 CYS A 1237 REMARK 465 GLU A 1238 REMARK 465 LYS A 1239 REMARK 465 CYS A 1240 REMARK 465 PHE A 1241 REMARK 465 THR A 1242 REMARK 465 GLU A 1243 REMARK 465 ILE A 1244 REMARK 465 GLN A 1245 REMARK 465 GLY A 1246 REMARK 465 GLU A 1247 REMARK 465 ASN A 1248 REMARK 465 VAL A 1249 REMARK 465 THR A 1250 REMARK 465 LEU A 1251 REMARK 465 GLY A 1252 REMARK 465 ASP A 1253 REMARK 465 ASP A 1254 REMARK 465 PRO A 1255 REMARK 465 SER A 1256 REMARK 465 GLN A 1257 REMARK 465 PRO A 1258 REMARK 465 GLN A 1259 REMARK 465 THR A 1260 REMARK 465 THR A 1261 REMARK 465 ILE A 1262 REMARK 465 SER A 1263 REMARK 465 LYS A 1264 REMARK 465 ASP A 1265 REMARK 465 GLN A 1266 REMARK 465 PHE A 1267 REMARK 465 GLU A 1268 REMARK 465 LYS A 1269 REMARK 465 LYS A 1270 REMARK 465 LYS A 1271 REMARK 465 ASN A 1272 REMARK 465 SER A 1613 REMARK 465 GLY A 1614 REMARK 465 GLY A 1615 REMARK 465 SER A 1616 REMARK 465 GLY A 1617 REMARK 465 SER A 1618 REMARK 465 GLN A 1619 REMARK 465 ALA A 1639 REMARK 465 GLY A 1640 REMARK 465 PRO A 1641 REMARK 465 VAL A 1642 REMARK 465 ILE A 1643 REMARK 465 SER A 1644 REMARK 465 THR A 1645 REMARK 465 GLN A 1646 REMARK 465 CYS A 1732 REMARK 465 TYR A 1733 REMARK 465 ASN A 1734 REMARK 465 THR A 1735 REMARK 465 LYS A 1736 REMARK 465 SER A 1737 REMARK 465 GLY A 1746 REMARK 465 LEU A 1747 REMARK 465 GLY A 1748 REMARK 465 LEU A 1749 REMARK 465 ASP A 1750 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A1075 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 1717 O HOH A 1901 2.00 REMARK 500 OG1 THR A 1447 O4A COA A 1805 2.12 REMARK 500 O7A COA A 1805 O HOH A 1902 2.14 REMARK 500 O HOH A 1947 O HOH A 1950 2.15 REMARK 500 SG CYS A 1710 SG CYS A 1729 2.16 REMARK 500 OE1 GLN A 1209 O HOH A 1903 2.17 REMARK 500 OH TYR A 1519 O HOH A 1904 2.19 REMARK 500 OE2 GLU A 1088 O HOH A 1905 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A1530 CG ARG A1530 CD -0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1378 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A1378 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 PHE A1523 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A1530 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A1530 CG - CD - NE ANGL. DEV. = -19.8 DEGREES REMARK 500 LEU A1537 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 CYS A1710 CA - CB - SG ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU A1715 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 GLU A1715 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 LEU A1728 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1078 139.83 171.98 REMARK 500 GLN A1079 89.32 -166.43 REMARK 500 ARG A1081 30.72 -86.27 REMARK 500 CYS A1200 -179.27 -171.20 REMARK 500 GLN A1209 -162.53 -101.76 REMARK 500 GLU A1285 -65.69 -95.74 REMARK 500 PHE A1324 55.55 -93.11 REMARK 500 GLU A1478 -121.22 43.64 REMARK 500 CYS A1486 89.14 -166.21 REMARK 500 SER A1552 21.42 -50.76 REMARK 500 LYS A1711 -0.43 64.83 REMARK 500 GLU A1715 -87.70 -111.74 REMARK 500 ASP A1725 75.09 -159.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1953 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1199 SG REMARK 620 2 CYS A1200 SG 125.6 REMARK 620 3 HIS A1291 ND1 106.3 107.0 REMARK 620 4 CYS A1294 SG 103.3 105.9 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1283 SG REMARK 620 2 CYS A1286 SG 130.6 REMARK 620 3 CYS A1308 SG 122.6 105.4 REMARK 620 4 CYS A1311 SG 120.8 75.6 79.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1707 SG REMARK 620 2 CYS A1710 SG 95.4 REMARK 620 3 CYS A1729 SG 83.0 51.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1720 SG REMARK 620 2 CYS A1723 SG 85.9 REMARK 620 3 HIS A1738 NE2 115.8 158.1 REMARK 620 4 HIS A1740 ND1 82.3 89.4 96.2 REMARK 620 N 1 2 3 DBREF 8CNB A 1078 1554 UNP F8VPR5 F8VPR5_MOUSE 1079 1555 DBREF 8CNB A 1619 1750 UNP F8VPR5 F8VPR5_MOUSE 1620 1751 SEQADV 8CNB MET A 1075 UNP F8VPR5 INITIATING METHIONINE SEQADV 8CNB GLY A 1076 UNP F8VPR5 EXPRESSION TAG SEQADV 8CNB SER A 1077 UNP F8VPR5 EXPRESSION TAG SEQADV 8CNB CYS A 1503 UNP F8VPR5 TYR 1504 ENGINEERED MUTATION SEQADV 8CNB GLU A 1555 UNP F8VPR5 LINKER SEQADV 8CNB SER A 1613 UNP F8VPR5 LINKER SEQADV 8CNB GLY A 1614 UNP F8VPR5 LINKER SEQADV 8CNB GLY A 1615 UNP F8VPR5 LINKER SEQADV 8CNB SER A 1616 UNP F8VPR5 LINKER SEQADV 8CNB GLY A 1617 UNP F8VPR5 LINKER SEQADV 8CNB SER A 1618 UNP F8VPR5 LINKER SEQRES 1 A 619 MET GLY SER SER GLN PRO ARG LYS LYS ILE PHE LYS PRO SEQRES 2 A 619 GLU GLU LEU ARG GLN ALA LEU MET PRO THR LEU GLU ALA SEQRES 3 A 619 LEU TYR ARG GLN ASP PRO GLU SER LEU PRO PHE ARG GLN SEQRES 4 A 619 PRO VAL ASP PRO GLN LEU LEU GLY ILE PRO ASP TYR PHE SEQRES 5 A 619 ASP ILE VAL LYS ASN PRO MET ASP LEU SER THR ILE LYS SEQRES 6 A 619 ARG LYS LEU ASP THR GLY GLN TYR GLN GLU PRO TRP GLN SEQRES 7 A 619 TYR VAL ASP ASP VAL TRP LEU MET PHE ASN ASN ALA TRP SEQRES 8 A 619 LEU TYR ASN ARG LYS THR SER ARG VAL TYR LYS PHE CYS SEQRES 9 A 619 SER LYS LEU ALA GLU VAL PHE GLU GLN GLU ILE ASP PRO SEQRES 10 A 619 VAL MET GLN SER LEU GLY TYR CYS CYS GLY ARG LYS TYR SEQRES 11 A 619 GLU PHE SER PRO GLN THR LEU CYS CYS TYR GLY LYS GLN SEQRES 12 A 619 LEU CYS THR ILE PRO ARG ASP ALA ALA TYR TYR SER TYR SEQRES 13 A 619 GLN ASN ARG TYR HIS PHE CYS GLU LYS CYS PHE THR GLU SEQRES 14 A 619 ILE GLN GLY GLU ASN VAL THR LEU GLY ASP ASP PRO SER SEQRES 15 A 619 GLN PRO GLN THR THR ILE SER LYS ASP GLN PHE GLU LYS SEQRES 16 A 619 LYS LYS ASN ASP THR LEU ASP PRO GLU PRO PHE VAL ASP SEQRES 17 A 619 CYS LYS GLU CYS GLY ARG LYS MET HIS GLN ILE CYS VAL SEQRES 18 A 619 LEU HIS TYR ASP ILE ILE TRP PRO SER GLY PHE VAL CYS SEQRES 19 A 619 ASP ASN CYS LEU LYS LYS THR GLY ARG PRO ARG LYS GLU SEQRES 20 A 619 ASN LYS PHE SER ALA LYS ARG LEU GLN THR THR ARG LEU SEQRES 21 A 619 GLY ASN HIS LEU GLU ASP ARG VAL ASN LYS PHE LEU ARG SEQRES 22 A 619 ARG GLN ASN HIS PRO GLU ALA GLY GLU VAL PHE VAL ARG SEQRES 23 A 619 VAL VAL ALA SER SER ASP LYS THR VAL GLU VAL LYS PRO SEQRES 24 A 619 GLY MET LYS SER ARG PHE VAL ASP SER GLY GLU MET SER SEQRES 25 A 619 GLU SER PHE PRO TYR ARG THR LYS ALA LEU PHE ALA PHE SEQRES 26 A 619 GLU GLU ILE ASP GLY VAL ASP VAL CYS PHE PHE GLY MET SEQRES 27 A 619 HIS VAL GLN GLU TYR GLY SER ASP CYS PRO PRO PRO ASN SEQRES 28 A 619 THR ARG ARG VAL TYR ILE SER TYR LEU ASP SER ILE HIS SEQRES 29 A 619 PHE PHE ARG PRO ARG CYS LEU ARG THR ALA VAL TYR HIS SEQRES 30 A 619 GLU ILE LEU ILE GLY TYR LEU GLU TYR VAL LYS LYS LEU SEQRES 31 A 619 GLY TYR VAL THR GLY HIS ILE TRP ALA CYS PRO PRO SER SEQRES 32 A 619 GLU GLY ASP ASP TYR ILE PHE HIS CYS HIS PRO PRO ASP SEQRES 33 A 619 GLN LYS ILE PRO LYS PRO LYS ARG LEU GLN GLU TRP CYS SEQRES 34 A 619 LYS LYS MET LEU ASP LYS ALA PHE ALA GLU ARG ILE ILE SEQRES 35 A 619 ASN ASP TYR LYS ASP ILE PHE LYS GLN ALA ASN GLU ASP SEQRES 36 A 619 ARG LEU THR SER ALA LYS GLU LEU PRO TYR PHE GLU GLY SEQRES 37 A 619 ASP PHE TRP PRO ASN VAL LEU GLU GLU SER ILE LYS GLU SEQRES 38 A 619 SER GLY GLY SER GLY SER GLN LYS LEU TYR ALA THR MET SEQRES 39 A 619 GLU LYS HIS LYS GLU VAL PHE PHE VAL ILE HIS LEU HIS SEQRES 40 A 619 ALA GLY PRO VAL ILE SER THR GLN PRO PRO ILE VAL ASP SEQRES 41 A 619 PRO ASP PRO LEU LEU SER CYS ASP LEU MET ASP GLY ARG SEQRES 42 A 619 ASP ALA PHE LEU THR LEU ALA ARG ASP LYS HIS TRP GLU SEQRES 43 A 619 PHE SER SER LEU ARG ARG SER LYS TRP SER THR LEU CYS SEQRES 44 A 619 MET LEU VAL GLU LEU HIS THR GLN GLY GLN ASP ARG PHE SEQRES 45 A 619 VAL TYR THR CYS ASN GLU CYS LYS HIS HIS VAL GLU THR SEQRES 46 A 619 ARG TRP HIS CYS THR VAL CYS GLU ASP TYR ASP LEU CYS SEQRES 47 A 619 ILE ASN CYS TYR ASN THR LYS SER HIS THR HIS LYS MET SEQRES 48 A 619 VAL LYS TRP GLY LEU GLY LEU ASP HET ZN A1801 1 HET ZN A1802 1 HET ZN A1803 1 HET ZN A1804 1 HET COA A1805 48 HETNAM ZN ZINC ION HETNAM COA COENZYME A FORMUL 2 ZN 4(ZN 2+) FORMUL 6 COA C21 H36 N7 O16 P3 S FORMUL 7 HOH *53(H2 O) HELIX 1 AA1 LYS A 1086 ARG A 1103 1 18 HELIX 2 AA2 SER A 1108 ARG A 1112 5 5 HELIX 3 AA3 ASP A 1116 GLY A 1121 1 6 HELIX 4 AA4 ASP A 1124 VAL A 1129 1 6 HELIX 5 AA5 ASP A 1134 GLY A 1145 1 12 HELIX 6 AA6 GLU A 1149 ASN A 1168 1 20 HELIX 7 AA7 SER A 1172 LEU A 1196 1 25 HELIX 8 AA8 GLN A 1292 LEU A 1296 1 5 HELIX 9 AA9 CYS A 1308 GLY A 1316 1 9 HELIX 10 AB1 THR A 1332 ASN A 1350 1 19 HELIX 11 AB2 LYS A 1372 VAL A 1380 1 9 HELIX 12 AB3 PRO A 1442 CYS A 1444 5 3 HELIX 13 AB4 LEU A 1445 GLY A 1465 1 21 HELIX 14 AB5 LYS A 1495 GLU A 1513 1 19 HELIX 15 AB6 ILE A 1522 ASN A 1527 1 6 HELIX 16 AB7 SER A 1533 LEU A 1537 5 5 HELIX 17 AB8 ASP A 1543 SER A 1552 1 10 HELIX 18 AB9 LEU A 1621 HIS A 1628 1 8 HELIX 19 AC1 CYS A 1658 ASP A 1662 5 5 HELIX 20 AC2 ARG A 1664 HIS A 1675 1 12 HELIX 21 AC3 SER A 1680 GLY A 1699 1 20 SHEET 1 AA1 2 PHE A1280 ASP A1282 0 SHEET 2 AA1 2 LYS A1289 HIS A1291 -1 O MET A1290 N VAL A1281 SHEET 1 AA2 7 VAL A1357 GLU A1370 0 SHEET 2 AA2 7 SER A1388 ILE A1402 -1 O TYR A1391 N LYS A1367 SHEET 3 AA2 7 VAL A1405 TYR A1417 -1 O VAL A1407 N GLU A1400 SHEET 4 AA2 7 ARG A1428 SER A1436 -1 O ARG A1428 N TYR A1417 SHEET 5 AA2 7 THR A1468 TRP A1472 1 O HIS A1470 N ILE A1431 SHEET 6 AA2 7 PHE A1632 HIS A1636 -1 O PHE A1633 N ILE A1471 SHEET 7 AA2 7 ASP A1518 ASP A1521 -1 N LYS A1520 O VAL A1634 SHEET 1 AA3 3 ASP A1727 LEU A1728 0 SHEET 2 AA3 3 TRP A1718 CYS A1720 -1 N TRP A1718 O LEU A1728 SHEET 3 AA3 3 MET A1742 LYS A1744 -1 O VAL A1743 N HIS A1719 LINK NH1 ARG A1446 O5A COA A1805 1555 1555 1.30 LINK SG CYS A1199 ZN ZN A1801 1555 1555 2.32 LINK SG CYS A1200 ZN ZN A1801 1555 1555 2.12 LINK SG CYS A1283 ZN ZN A1802 1555 1555 2.37 LINK SG CYS A1286 ZN ZN A1802 1555 1555 2.12 LINK ND1 HIS A1291 ZN ZN A1801 1555 1555 2.10 LINK SG CYS A1294 ZN ZN A1801 1555 1555 2.25 LINK SG CYS A1308 ZN ZN A1802 1555 1555 1.97 LINK SG CYS A1311 ZN ZN A1802 1555 1555 2.27 LINK SG CYS A1707 ZN ZN A1803 1555 1555 2.74 LINK SG CYS A1710 ZN ZN A1803 1555 1555 2.26 LINK SG CYS A1720 ZN ZN A1804 1555 1555 2.54 LINK SG CYS A1723 ZN ZN A1804 1555 1555 2.24 LINK SG CYS A1729 ZN ZN A1803 1555 1555 2.65 LINK NE2 HIS A1738 ZN ZN A1804 1555 1555 2.07 LINK ND1 HIS A1740 ZN ZN A1804 1555 1555 2.02 CISPEP 1 ASP A 1105 PRO A 1106 0 6.23 CISPEP 2 PRO A 1423 PRO A 1424 0 -0.39 CISPEP 3 ARG A 1441 PRO A 1442 0 -1.81 CRYST1 86.669 144.819 155.440 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006433 0.00000