HEADER SIGNALING PROTEIN 27-FEB-23 8CO5 TITLE THE SURFACE-ENGINEERED PHOTOSENSORY MODULE (PAS-GAF-PHY) OF THE TITLE 2 BACTERIAL PHYTOCHROME AGP1 (ATBPHP1) IN THE PR FORM WITH PARALLEL TITLE 3 DIMER FORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: ATU1990; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B(+) KEYWDS BILIN CHROMOPHORE, PARALLEL DIMER, PHYTOCHROME, PHOTORECEPTOR, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHMIDT,L.SAUTHOF,N.KRAUSS,P.SCHEERER REVDAT 2 09-OCT-24 8CO5 1 REMARK REVDAT 1 06-MAR-24 8CO5 0 JRNL AUTH P.SCHEERER,A.SCHMIDT,S.NAGANO,B.M.QURESHI,M.SZCZEPEK, JRNL AUTH 2 L.SAUTHOF,N.MICHAEL,K.INOMATA,T.LAMPARTER,N.KRAUSS JRNL TITL CRYSTAL STRUCTURES OF A BACTERIAL PHYTOCHROME EXHIBITING A JRNL TITL 2 GROUP-SUBGROUP RELATIONSHIP REVEAL PRONOUNCED FLEXIBILITY OF JRNL TITL 3 THE PHOTOSENSORY CORE MODULE IN THE PR STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1159 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 2.074 ; 7.142 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1902 ; 2.098 ; 7.140 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2375 ; 3.047 ;10.701 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2376 ; 3.071 ;10.703 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1760 ; 1.668 ; 7.086 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1761 ; 1.668 ; 7.086 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2623 ; 2.487 ;10.587 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4066 ; 4.599 ;83.072 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4067 ; 4.599 ;83.064 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7032 ; 6.785 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 306 REMARK 3 RESIDUE RANGE : A 307 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): 27.936 32.998 20.873 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0455 REMARK 3 T33: 0.0010 T12: -0.0029 REMARK 3 T13: 0.0006 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.1347 L22: 0.1407 REMARK 3 L33: 0.0986 L12: -0.1243 REMARK 3 L13: 0.1031 L23: -0.1056 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: 0.0082 S13: -0.0029 REMARK 3 S21: -0.0107 S22: -0.0083 S23: -0.0016 REMARK 3 S31: 0.0089 S32: 0.0058 S33: 0.0008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8CO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292127597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22938 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 46.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG4000, 100MM TRIS BUFFER, REMARK 280 0.2M MGCL2, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 86.23850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 86.23850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.41000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 86.23850 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 86.23850 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 39.41000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 86.23850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 86.23850 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 39.41000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 86.23850 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 86.23850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.41000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 86.23850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.23850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.41000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 86.23850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.23850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 39.41000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 86.23850 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 86.23850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 39.41000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 86.23850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 86.23850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.23850 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.23850 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.41000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 756 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 779 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 THR A 14 REMARK 465 PRO A 15 REMARK 465 LYS A 16 REMARK 465 LEU A 17 REMARK 465 ALA A 334 REMARK 465 ALA A 335 REMARK 465 ALA A 336 REMARK 465 ALA A 337 REMARK 465 THR A 452 REMARK 465 VAL A 453 REMARK 465 GLN A 454 REMARK 465 GLU A 455 REMARK 465 SER A 456 REMARK 465 GLY A 457 REMARK 465 GLU A 503 REMARK 465 GLU A 504 REMARK 465 LEU A 505 REMARK 465 GLU A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 VAL A 60 CG1 CG2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 VAL A 119 CG1 CG2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LEU A 130 CG CD1 CD2 REMARK 470 SER A 132 OG REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LEU A 137 CG CD1 CD2 REMARK 470 SER A 139 OG REMARK 470 LEU A 143 CG CD1 CD2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 VAL A 291 CG1 CG2 REMARK 470 GLU A 346 CG CD OE1 OE2 REMARK 470 GLU A 392 CG CD OE1 OE2 REMARK 470 ILE A 393 CG1 CG2 CD1 REMARK 470 ARG A 423 CG CD NE CZ NH1 NH2 REMARK 470 SER A 425 OG REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 LEU A 427 CG CD1 CD2 REMARK 470 HIS A 450 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 ARG A 458 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 459 CG1 CG2 CD1 REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 ILE A 467 CG1 CG2 CD1 REMARK 470 LEU A 499 CG CD1 CD2 REMARK 470 ARG A 500 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 501 CG CD CE NZ REMARK 470 THR A 502 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 27 55.95 -141.81 REMARK 500 GLU A 121 113.09 -175.01 REMARK 500 ASP A 218 40.58 -106.04 REMARK 500 GLU A 392 75.06 -68.30 REMARK 500 ALA A 394 -77.63 -68.03 REMARK 500 ASP A 395 -71.31 -101.13 REMARK 500 ASN A 401 82.67 -154.10 REMARK 500 SER A 425 86.47 -172.30 REMARK 500 ILE A 467 117.59 -39.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 PHE A 168 O 75.7 REMARK 620 3 HOH A 719 O 68.5 81.9 REMARK 620 4 HOH A 735 O 72.9 147.0 95.8 REMARK 620 5 HOH A 742 O 83.5 82.1 150.4 84.4 REMARK 620 6 HOH A 751 O 155.5 81.8 98.9 130.7 103.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HSQ RELATED DB: PDB REMARK 900 RELATED ID: 6R27 RELATED DB: PDB REMARK 900 RELATED ID: 6R26 RELATED DB: PDB DBREF 8CO5 A 10 504 UNP Q7CY45 Q7CY45_AGRFC 1 495 SEQADV 8CO5 ALA A 86 UNP Q7CY45 GLU 77 ENGINEERED MUTATION SEQADV 8CO5 ALA A 87 UNP Q7CY45 GLU 78 ENGINEERED MUTATION SEQADV 8CO5 ALA A 336 UNP Q7CY45 GLU 327 ENGINEERED MUTATION SEQADV 8CO5 ALA A 337 UNP Q7CY45 LYS 328 ENGINEERED MUTATION SEQADV 8CO5 LEU A 505 UNP Q7CY45 EXPRESSION TAG SEQADV 8CO5 GLU A 506 UNP Q7CY45 EXPRESSION TAG SEQADV 8CO5 HIS A 507 UNP Q7CY45 EXPRESSION TAG SEQADV 8CO5 HIS A 508 UNP Q7CY45 EXPRESSION TAG SEQADV 8CO5 HIS A 509 UNP Q7CY45 EXPRESSION TAG SEQADV 8CO5 HIS A 510 UNP Q7CY45 EXPRESSION TAG SEQADV 8CO5 HIS A 511 UNP Q7CY45 EXPRESSION TAG SEQADV 8CO5 HIS A 512 UNP Q7CY45 EXPRESSION TAG SEQRES 1 A 503 MET SER SER HIS THR PRO LYS LEU ASP SER CYS GLY ALA SEQRES 2 A 503 GLU PRO ILE HIS ILE PRO GLY ALA ILE GLN GLU HIS GLY SEQRES 3 A 503 ALA LEU LEU VAL LEU SER ALA ARG GLU PHE SER VAL VAL SEQRES 4 A 503 GLN ALA SER ASP ASN LEU ALA ASN TYR ILE GLY VAL ASP SEQRES 5 A 503 LEU PRO ILE GLY ALA VAL ALA THR GLU ALA ASN LEU PRO SEQRES 6 A 503 PHE ILE SER VAL LEU SER ALA TRP TYR SER GLY ALA ALA SEQRES 7 A 503 SER ASN PHE ARG TYR ALA TRP ALA GLU LYS LYS LEU ASP SEQRES 8 A 503 VAL SER ALA HIS ARG SER GLY THR LEU VAL ILE LEU GLU SEQRES 9 A 503 VAL GLU LYS ALA GLY VAL GLY GLU SER ALA GLU LYS LEU SEQRES 10 A 503 MET GLY GLU LEU THR SER LEU ALA LYS TYR LEU ASN SER SEQRES 11 A 503 ALA PRO SER LEU GLU ASP ALA LEU PHE ARG THR ALA GLN SEQRES 12 A 503 LEU VAL SER SER ILE SER GLY HIS ASP ARG THR LEU ILE SEQRES 13 A 503 TYR ASP PHE GLY LEU ASP TRP SER GLY HIS VAL VAL ALA SEQRES 14 A 503 GLU ALA GLY SER GLY ALA LEU PRO SER TYR LEU GLY LEU SEQRES 15 A 503 ARG PHE PRO ALA GLY ASP ILE PRO PRO GLN ALA ARG GLN SEQRES 16 A 503 LEU TYR THR ILE ASN ARG LEU ARG MET ILE PRO ASP VAL SEQRES 17 A 503 ASP TYR LYS PRO VAL PRO ILE ARG PRO GLU VAL ASN ALA SEQRES 18 A 503 GLU THR GLY ALA VAL LEU ASP MET SER PHE SER GLN LEU SEQRES 19 A 503 ARG SER VAL SER PRO VAL HIS LEU GLU TYR MET ARG ASN SEQRES 20 A 503 MET GLY THR ALA ALA SER MET SER VAL SER ILE VAL VAL SEQRES 21 A 503 ASN GLY ALA LEU TRP GLY LEU ILE ALA CYS HIS HIS ALA SEQRES 22 A 503 THR PRO HIS SER VAL SER LEU ALA VAL ARG GLU ALA CYS SEQRES 23 A 503 ASP PHE ALA ALA GLN LEU LEU SER MET ARG ILE ALA MET SEQRES 24 A 503 GLU GLN SER SER GLN ASP ALA SER ARG ARG VAL GLU LEU SEQRES 25 A 503 GLY HIS ILE GLN ALA ARG LEU LEU LYS GLY MET ALA ALA SEQRES 26 A 503 ALA ALA ALA TRP VAL ASP GLY LEU LEU GLY GLY GLU GLY SEQRES 27 A 503 GLU ARG GLU ASP LEU LEU LYS GLN VAL GLY ALA ASP GLY SEQRES 28 A 503 ALA ALA LEU VAL LEU GLY ASP ASP TYR GLU LEU VAL GLY SEQRES 29 A 503 ASN THR PRO SER ARG GLU GLN VAL GLU GLU LEU ILE LEU SEQRES 30 A 503 TRP LEU GLY GLU ARG GLU ILE ALA ASP VAL PHE ALA THR SEQRES 31 A 503 ASP ASN LEU ALA GLY ASN TYR PRO THR ALA ALA ALA TYR SEQRES 32 A 503 ALA SER VAL ALA SER GLY ILE ILE ALA MET ARG VAL SER SEQRES 33 A 503 GLU LEU HIS GLY SER TRP LEU ILE TRP PHE ARG PRO GLU SEQRES 34 A 503 VAL ILE LYS THR VAL ARG TRP GLY GLY ASP PRO HIS LYS SEQRES 35 A 503 THR VAL GLN GLU SER GLY ARG ILE HIS PRO ARG LYS SER SEQRES 36 A 503 PHE GLU ILE TRP LYS GLU GLN LEU ARG ASN THR SER PHE SEQRES 37 A 503 PRO TRP SER GLU PRO GLU LEU ALA ALA ALA ARG GLU LEU SEQRES 38 A 503 ARG GLY ALA ILE ILE GLY ILE VAL LEU ARG LYS THR GLU SEQRES 39 A 503 GLU LEU GLU HIS HIS HIS HIS HIS HIS HET V8U A 601 43 HET MG A 602 1 HETNAM V8U 3-[5-[(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YL) HETNAM 2 V8U METHYL]-2-[[5-[(3-ETHYL-4-METHYL-5-OXIDANYLIDENE- HETNAM 3 V8U PYRROL-2-YL)METHYL]-3-(3-HYDROXY-3-OXOPROPYL)-4- HETNAM 4 V8U METHYL-1~{H}-PYRROL-2-YL]METHYL]-4-METHYL-1~{H}- HETNAM 5 V8U PYRROL-3-YL]PROPANOIC ACID HETNAM MG MAGNESIUM ION FORMUL 2 V8U C33 H38 N4 O6 FORMUL 3 MG MG 2+ FORMUL 4 HOH *83(H2 O) HELIX 1 AA1 SER A 19 GLU A 23 5 5 HELIX 2 AA2 ASN A 53 GLY A 59 1 7 HELIX 3 AA3 PHE A 75 GLY A 85 1 11 HELIX 4 AA4 SER A 122 LYS A 135 1 14 HELIX 5 AA5 SER A 142 GLY A 159 1 18 HELIX 6 AA6 PRO A 194 ILE A 198 5 5 HELIX 7 AA7 PRO A 199 ASN A 209 1 11 HELIX 8 AA8 SER A 247 GLY A 258 1 12 HELIX 9 AA9 SER A 288 ALA A 333 1 46 HELIX 10 AB1 VAL A 339 GLY A 344 1 6 HELIX 11 AB2 GLY A 345 GLN A 355 1 11 HELIX 12 AB3 SER A 377 GLU A 390 1 14 HELIX 13 AB4 ASN A 401 ASN A 405 5 5 HELIX 14 AB5 TYR A 406 ALA A 413 5 8 HELIX 15 AB6 SER A 480 THR A 502 1 23 SHEET 1 AA1 7 ALA A 30 ILE A 31 0 SHEET 2 AA1 7 VAL A 222 ARG A 225 -1 O VAL A 222 N ILE A 31 SHEET 3 AA1 7 SER A 46 SER A 51 -1 N ALA A 50 O ARG A 225 SHEET 4 AA1 7 GLY A 35 SER A 41 -1 N VAL A 39 O VAL A 48 SHEET 5 AA1 7 LEU A 109 LYS A 116 -1 O LEU A 112 N LEU A 38 SHEET 6 AA1 7 LEU A 99 SER A 106 -1 N ASP A 100 O GLU A 115 SHEET 7 AA1 7 ASN A 89 TRP A 94 -1 N TYR A 92 O VAL A 101 SHEET 1 AA2 6 ARG A 192 PHE A 193 0 SHEET 2 AA2 6 GLY A 174 GLY A 181 -1 N GLY A 174 O PHE A 193 SHEET 3 AA2 6 ARG A 162 PHE A 168 -1 N THR A 163 O ALA A 180 SHEET 4 AA2 6 ALA A 272 HIS A 281 -1 O LEU A 276 N TYR A 166 SHEET 5 AA2 6 ALA A 261 VAL A 269 -1 N MET A 263 O CYS A 279 SHEET 6 AA2 6 LEU A 211 ILE A 214 -1 N ILE A 214 O SER A 262 SHEET 1 AA3 5 ASP A 368 GLY A 373 0 SHEET 2 AA3 5 GLY A 360 LEU A 365 -1 N ALA A 361 O VAL A 372 SHEET 3 AA3 5 SER A 430 ARG A 436 -1 O ILE A 433 N ALA A 362 SHEET 4 AA3 5 GLY A 418 SER A 425 -1 N GLY A 418 O ARG A 436 SHEET 5 AA3 5 PHE A 397 THR A 399 -1 N PHE A 397 O ALA A 421 SHEET 1 AA4 2 LYS A 441 GLY A 446 0 SHEET 2 AA4 2 ILE A 467 LEU A 472 -1 O TRP A 468 N TRP A 445 LINK SG CYS A 20 CBC V8U A 601 1555 1555 1.83 LINK OD1 ASP A 167 MG MG A 602 1555 1555 2.48 LINK O PHE A 168 MG MG A 602 1555 1555 2.28 LINK MG MG A 602 O HOH A 719 1555 1555 2.32 LINK MG MG A 602 O HOH A 735 1555 1555 2.69 LINK MG MG A 602 O HOH A 742 1555 1555 1.97 LINK MG MG A 602 O HOH A 751 1555 1555 2.13 CISPEP 1 ARG A 225 PRO A 226 0 -2.75 CRYST1 172.477 172.477 78.820 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005798 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012687 0.00000