HEADER SIGNALING PROTEIN 27-FEB-23 8CO5
TITLE THE SURFACE-ENGINEERED PHOTOSENSORY MODULE (PAS-GAF-PHY) OF THE
TITLE 2 BACTERIAL PHYTOCHROME AGP1 (ATBPHP1) IN THE PR FORM WITH PARALLEL
TITLE 3 DIMER FORMATION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BACTERIOPHYTOCHROME PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58;
SOURCE 3 ORGANISM_TAXID: 176299;
SOURCE 4 STRAIN: C58;
SOURCE 5 ATCC: 33970;
SOURCE 6 GENE: ATU1990;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B(+)
KEYWDS BILIN CHROMOPHORE, PARALLEL DIMER, PHYTOCHROME, PHOTORECEPTOR,
KEYWDS 2 SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.SCHMIDT,L.SAUTHOF,N.KRAUSS,P.SCHEERER
REVDAT 2 09-OCT-24 8CO5 1 REMARK
REVDAT 1 06-MAR-24 8CO5 0
JRNL AUTH P.SCHEERER,A.SCHMIDT,S.NAGANO,B.M.QURESHI,M.SZCZEPEK,
JRNL AUTH 2 L.SAUTHOF,N.MICHAEL,K.INOMATA,T.LAMPARTER,N.KRAUSS
JRNL TITL CRYSTAL STRUCTURES OF A BACTERIAL PHYTOCHROME EXHIBITING A
JRNL TITL 2 GROUP-SUBGROUP RELATIONSHIP REVEAL PRONOUNCED FLEXIBILITY OF
JRNL TITL 3 THE PHOTOSENSORY CORE MODULE IN THE PR STATE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.42 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0267
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.49
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 21783
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.214
REMARK 3 R VALUE (WORKING SET) : 0.212
REMARK 3 FREE R VALUE : 0.252
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1159
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1566
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76
REMARK 3 BIN R VALUE (WORKING SET) : 0.3230
REMARK 3 BIN FREE R VALUE SET COUNT : 89
REMARK 3 BIN FREE R VALUE : 0.3410
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3517
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 44
REMARK 3 SOLVENT ATOMS : 83
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.22000
REMARK 3 B22 (A**2) : -0.22000
REMARK 3 B33 (A**2) : 0.44000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.704
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 2.074 ; 7.142
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1902 ; 2.098 ; 7.140
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2375 ; 3.047 ;10.701
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2376 ; 3.071 ;10.703
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1760 ; 1.668 ; 7.086
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1761 ; 1.668 ; 7.086
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2623 ; 2.487 ;10.587
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4066 ; 4.599 ;83.072
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4067 ; 4.599 ;83.064
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7032 ; 6.785 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 18 A 306
REMARK 3 RESIDUE RANGE : A 307 A 502
REMARK 3 ORIGIN FOR THE GROUP (A): 27.936 32.998 20.873
REMARK 3 T TENSOR
REMARK 3 T11: 0.0431 T22: 0.0455
REMARK 3 T33: 0.0010 T12: -0.0029
REMARK 3 T13: 0.0006 T23: -0.0025
REMARK 3 L TENSOR
REMARK 3 L11: 0.1347 L22: 0.1407
REMARK 3 L33: 0.0986 L12: -0.1243
REMARK 3 L13: 0.1031 L23: -0.1056
REMARK 3 S TENSOR
REMARK 3 S11: 0.0075 S12: 0.0082 S13: -0.0029
REMARK 3 S21: -0.0107 S22: -0.0083 S23: -0.0016
REMARK 3 S31: 0.0089 S32: 0.0058 S33: 0.0008
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 8CO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-23.
REMARK 100 THE DEPOSITION ID IS D_1292127597.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 26-AUG-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.0-9.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22938
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420
REMARK 200 RESOLUTION RANGE LOW (A) : 46.490
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 8.600
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.06
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG4000, 100MM TRIS BUFFER,
REMARK 280 0.2M MGCL2, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -Y,X,Z
REMARK 290 4555 Y,-X,Z
REMARK 290 5555 -X,Y,-Z
REMARK 290 6555 X,-Y,-Z
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z
REMARK 290 9555 X+1/2,Y+1/2,Z+1/2
REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2
REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2
REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2
REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 86.23850
REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 86.23850
REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.41000
REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 86.23850
REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 86.23850
REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 39.41000
REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 86.23850
REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 86.23850
REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 39.41000
REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 86.23850
REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 86.23850
REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.41000
REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 86.23850
REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.23850
REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.41000
REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 86.23850
REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.23850
REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 39.41000
REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 86.23850
REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 86.23850
REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 39.41000
REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 86.23850
REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 86.23850
REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.41000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 41250 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.23850
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.23850
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.41000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 756 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 779 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 10
REMARK 465 SER A 11
REMARK 465 SER A 12
REMARK 465 HIS A 13
REMARK 465 THR A 14
REMARK 465 PRO A 15
REMARK 465 LYS A 16
REMARK 465 LEU A 17
REMARK 465 ALA A 334
REMARK 465 ALA A 335
REMARK 465 ALA A 336
REMARK 465 ALA A 337
REMARK 465 THR A 452
REMARK 465 VAL A 453
REMARK 465 GLN A 454
REMARK 465 GLU A 455
REMARK 465 SER A 456
REMARK 465 GLY A 457
REMARK 465 GLU A 503
REMARK 465 GLU A 504
REMARK 465 LEU A 505
REMARK 465 GLU A 506
REMARK 465 HIS A 507
REMARK 465 HIS A 508
REMARK 465 HIS A 509
REMARK 465 HIS A 510
REMARK 465 HIS A 511
REMARK 465 HIS A 512
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 44 CG CD OE1 OE2
REMARK 470 VAL A 60 CG1 CG2
REMARK 470 GLU A 96 CG CD OE1 OE2
REMARK 470 VAL A 119 CG1 CG2
REMARK 470 LYS A 125 CG CD CE NZ
REMARK 470 LEU A 130 CG CD1 CD2
REMARK 470 SER A 132 OG
REMARK 470 LYS A 135 CG CD CE NZ
REMARK 470 LEU A 137 CG CD1 CD2
REMARK 470 SER A 139 OG
REMARK 470 LEU A 143 CG CD1 CD2
REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 227 CG CD OE1 OE2
REMARK 470 VAL A 291 CG1 CG2
REMARK 470 GLU A 346 CG CD OE1 OE2
REMARK 470 GLU A 392 CG CD OE1 OE2
REMARK 470 ILE A 393 CG1 CG2 CD1
REMARK 470 ARG A 423 CG CD NE CZ NH1 NH2
REMARK 470 SER A 425 OG
REMARK 470 GLU A 426 CG CD OE1 OE2
REMARK 470 LEU A 427 CG CD1 CD2
REMARK 470 HIS A 450 CG ND1 CD2 CE1 NE2
REMARK 470 LYS A 451 CG CD CE NZ
REMARK 470 ARG A 458 CG CD NE CZ NH1 NH2
REMARK 470 ILE A 459 CG1 CG2 CD1
REMARK 470 LYS A 463 CG CD CE NZ
REMARK 470 GLU A 466 CG CD OE1 OE2
REMARK 470 ILE A 467 CG1 CG2 CD1
REMARK 470 LEU A 499 CG CD1 CD2
REMARK 470 ARG A 500 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 501 CG CD CE NZ
REMARK 470 THR A 502 OG1 CG2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ILE A 27 55.95 -141.81
REMARK 500 GLU A 121 113.09 -175.01
REMARK 500 ASP A 218 40.58 -106.04
REMARK 500 GLU A 392 75.06 -68.30
REMARK 500 ALA A 394 -77.63 -68.03
REMARK 500 ASP A 395 -71.31 -101.13
REMARK 500 ASN A 401 82.67 -154.10
REMARK 500 SER A 425 86.47 -172.30
REMARK 500 ILE A 467 117.59 -39.34
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 602 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 167 OD1
REMARK 620 2 PHE A 168 O 75.7
REMARK 620 3 HOH A 719 O 68.5 81.9
REMARK 620 4 HOH A 735 O 72.9 147.0 95.8
REMARK 620 5 HOH A 742 O 83.5 82.1 150.4 84.4
REMARK 620 6 HOH A 751 O 155.5 81.8 98.9 130.7 103.3
REMARK 620 N 1 2 3 4 5
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5HSQ RELATED DB: PDB
REMARK 900 RELATED ID: 6R27 RELATED DB: PDB
REMARK 900 RELATED ID: 6R26 RELATED DB: PDB
DBREF 8CO5 A 10 504 UNP Q7CY45 Q7CY45_AGRFC 1 495
SEQADV 8CO5 ALA A 86 UNP Q7CY45 GLU 77 ENGINEERED MUTATION
SEQADV 8CO5 ALA A 87 UNP Q7CY45 GLU 78 ENGINEERED MUTATION
SEQADV 8CO5 ALA A 336 UNP Q7CY45 GLU 327 ENGINEERED MUTATION
SEQADV 8CO5 ALA A 337 UNP Q7CY45 LYS 328 ENGINEERED MUTATION
SEQADV 8CO5 LEU A 505 UNP Q7CY45 EXPRESSION TAG
SEQADV 8CO5 GLU A 506 UNP Q7CY45 EXPRESSION TAG
SEQADV 8CO5 HIS A 507 UNP Q7CY45 EXPRESSION TAG
SEQADV 8CO5 HIS A 508 UNP Q7CY45 EXPRESSION TAG
SEQADV 8CO5 HIS A 509 UNP Q7CY45 EXPRESSION TAG
SEQADV 8CO5 HIS A 510 UNP Q7CY45 EXPRESSION TAG
SEQADV 8CO5 HIS A 511 UNP Q7CY45 EXPRESSION TAG
SEQADV 8CO5 HIS A 512 UNP Q7CY45 EXPRESSION TAG
SEQRES 1 A 503 MET SER SER HIS THR PRO LYS LEU ASP SER CYS GLY ALA
SEQRES 2 A 503 GLU PRO ILE HIS ILE PRO GLY ALA ILE GLN GLU HIS GLY
SEQRES 3 A 503 ALA LEU LEU VAL LEU SER ALA ARG GLU PHE SER VAL VAL
SEQRES 4 A 503 GLN ALA SER ASP ASN LEU ALA ASN TYR ILE GLY VAL ASP
SEQRES 5 A 503 LEU PRO ILE GLY ALA VAL ALA THR GLU ALA ASN LEU PRO
SEQRES 6 A 503 PHE ILE SER VAL LEU SER ALA TRP TYR SER GLY ALA ALA
SEQRES 7 A 503 SER ASN PHE ARG TYR ALA TRP ALA GLU LYS LYS LEU ASP
SEQRES 8 A 503 VAL SER ALA HIS ARG SER GLY THR LEU VAL ILE LEU GLU
SEQRES 9 A 503 VAL GLU LYS ALA GLY VAL GLY GLU SER ALA GLU LYS LEU
SEQRES 10 A 503 MET GLY GLU LEU THR SER LEU ALA LYS TYR LEU ASN SER
SEQRES 11 A 503 ALA PRO SER LEU GLU ASP ALA LEU PHE ARG THR ALA GLN
SEQRES 12 A 503 LEU VAL SER SER ILE SER GLY HIS ASP ARG THR LEU ILE
SEQRES 13 A 503 TYR ASP PHE GLY LEU ASP TRP SER GLY HIS VAL VAL ALA
SEQRES 14 A 503 GLU ALA GLY SER GLY ALA LEU PRO SER TYR LEU GLY LEU
SEQRES 15 A 503 ARG PHE PRO ALA GLY ASP ILE PRO PRO GLN ALA ARG GLN
SEQRES 16 A 503 LEU TYR THR ILE ASN ARG LEU ARG MET ILE PRO ASP VAL
SEQRES 17 A 503 ASP TYR LYS PRO VAL PRO ILE ARG PRO GLU VAL ASN ALA
SEQRES 18 A 503 GLU THR GLY ALA VAL LEU ASP MET SER PHE SER GLN LEU
SEQRES 19 A 503 ARG SER VAL SER PRO VAL HIS LEU GLU TYR MET ARG ASN
SEQRES 20 A 503 MET GLY THR ALA ALA SER MET SER VAL SER ILE VAL VAL
SEQRES 21 A 503 ASN GLY ALA LEU TRP GLY LEU ILE ALA CYS HIS HIS ALA
SEQRES 22 A 503 THR PRO HIS SER VAL SER LEU ALA VAL ARG GLU ALA CYS
SEQRES 23 A 503 ASP PHE ALA ALA GLN LEU LEU SER MET ARG ILE ALA MET
SEQRES 24 A 503 GLU GLN SER SER GLN ASP ALA SER ARG ARG VAL GLU LEU
SEQRES 25 A 503 GLY HIS ILE GLN ALA ARG LEU LEU LYS GLY MET ALA ALA
SEQRES 26 A 503 ALA ALA ALA TRP VAL ASP GLY LEU LEU GLY GLY GLU GLY
SEQRES 27 A 503 GLU ARG GLU ASP LEU LEU LYS GLN VAL GLY ALA ASP GLY
SEQRES 28 A 503 ALA ALA LEU VAL LEU GLY ASP ASP TYR GLU LEU VAL GLY
SEQRES 29 A 503 ASN THR PRO SER ARG GLU GLN VAL GLU GLU LEU ILE LEU
SEQRES 30 A 503 TRP LEU GLY GLU ARG GLU ILE ALA ASP VAL PHE ALA THR
SEQRES 31 A 503 ASP ASN LEU ALA GLY ASN TYR PRO THR ALA ALA ALA TYR
SEQRES 32 A 503 ALA SER VAL ALA SER GLY ILE ILE ALA MET ARG VAL SER
SEQRES 33 A 503 GLU LEU HIS GLY SER TRP LEU ILE TRP PHE ARG PRO GLU
SEQRES 34 A 503 VAL ILE LYS THR VAL ARG TRP GLY GLY ASP PRO HIS LYS
SEQRES 35 A 503 THR VAL GLN GLU SER GLY ARG ILE HIS PRO ARG LYS SER
SEQRES 36 A 503 PHE GLU ILE TRP LYS GLU GLN LEU ARG ASN THR SER PHE
SEQRES 37 A 503 PRO TRP SER GLU PRO GLU LEU ALA ALA ALA ARG GLU LEU
SEQRES 38 A 503 ARG GLY ALA ILE ILE GLY ILE VAL LEU ARG LYS THR GLU
SEQRES 39 A 503 GLU LEU GLU HIS HIS HIS HIS HIS HIS
HET V8U A 601 43
HET MG A 602 1
HETNAM V8U 3-[5-[(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YL)
HETNAM 2 V8U METHYL]-2-[[5-[(3-ETHYL-4-METHYL-5-OXIDANYLIDENE-
HETNAM 3 V8U PYRROL-2-YL)METHYL]-3-(3-HYDROXY-3-OXOPROPYL)-4-
HETNAM 4 V8U METHYL-1~{H}-PYRROL-2-YL]METHYL]-4-METHYL-1~{H}-
HETNAM 5 V8U PYRROL-3-YL]PROPANOIC ACID
HETNAM MG MAGNESIUM ION
FORMUL 2 V8U C33 H38 N4 O6
FORMUL 3 MG MG 2+
FORMUL 4 HOH *83(H2 O)
HELIX 1 AA1 SER A 19 GLU A 23 5 5
HELIX 2 AA2 ASN A 53 GLY A 59 1 7
HELIX 3 AA3 PHE A 75 GLY A 85 1 11
HELIX 4 AA4 SER A 122 LYS A 135 1 14
HELIX 5 AA5 SER A 142 GLY A 159 1 18
HELIX 6 AA6 PRO A 194 ILE A 198 5 5
HELIX 7 AA7 PRO A 199 ASN A 209 1 11
HELIX 8 AA8 SER A 247 GLY A 258 1 12
HELIX 9 AA9 SER A 288 ALA A 333 1 46
HELIX 10 AB1 VAL A 339 GLY A 344 1 6
HELIX 11 AB2 GLY A 345 GLN A 355 1 11
HELIX 12 AB3 SER A 377 GLU A 390 1 14
HELIX 13 AB4 ASN A 401 ASN A 405 5 5
HELIX 14 AB5 TYR A 406 ALA A 413 5 8
HELIX 15 AB6 SER A 480 THR A 502 1 23
SHEET 1 AA1 7 ALA A 30 ILE A 31 0
SHEET 2 AA1 7 VAL A 222 ARG A 225 -1 O VAL A 222 N ILE A 31
SHEET 3 AA1 7 SER A 46 SER A 51 -1 N ALA A 50 O ARG A 225
SHEET 4 AA1 7 GLY A 35 SER A 41 -1 N VAL A 39 O VAL A 48
SHEET 5 AA1 7 LEU A 109 LYS A 116 -1 O LEU A 112 N LEU A 38
SHEET 6 AA1 7 LEU A 99 SER A 106 -1 N ASP A 100 O GLU A 115
SHEET 7 AA1 7 ASN A 89 TRP A 94 -1 N TYR A 92 O VAL A 101
SHEET 1 AA2 6 ARG A 192 PHE A 193 0
SHEET 2 AA2 6 GLY A 174 GLY A 181 -1 N GLY A 174 O PHE A 193
SHEET 3 AA2 6 ARG A 162 PHE A 168 -1 N THR A 163 O ALA A 180
SHEET 4 AA2 6 ALA A 272 HIS A 281 -1 O LEU A 276 N TYR A 166
SHEET 5 AA2 6 ALA A 261 VAL A 269 -1 N MET A 263 O CYS A 279
SHEET 6 AA2 6 LEU A 211 ILE A 214 -1 N ILE A 214 O SER A 262
SHEET 1 AA3 5 ASP A 368 GLY A 373 0
SHEET 2 AA3 5 GLY A 360 LEU A 365 -1 N ALA A 361 O VAL A 372
SHEET 3 AA3 5 SER A 430 ARG A 436 -1 O ILE A 433 N ALA A 362
SHEET 4 AA3 5 GLY A 418 SER A 425 -1 N GLY A 418 O ARG A 436
SHEET 5 AA3 5 PHE A 397 THR A 399 -1 N PHE A 397 O ALA A 421
SHEET 1 AA4 2 LYS A 441 GLY A 446 0
SHEET 2 AA4 2 ILE A 467 LEU A 472 -1 O TRP A 468 N TRP A 445
LINK SG CYS A 20 CBC V8U A 601 1555 1555 1.83
LINK OD1 ASP A 167 MG MG A 602 1555 1555 2.48
LINK O PHE A 168 MG MG A 602 1555 1555 2.28
LINK MG MG A 602 O HOH A 719 1555 1555 2.32
LINK MG MG A 602 O HOH A 735 1555 1555 2.69
LINK MG MG A 602 O HOH A 742 1555 1555 1.97
LINK MG MG A 602 O HOH A 751 1555 1555 2.13
CISPEP 1 ARG A 225 PRO A 226 0 -2.75
CRYST1 172.477 172.477 78.820 90.00 90.00 90.00 I 4 2 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005798 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005798 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012687 0.00000