HEADER HYDROLASE 01-MAR-23 8COZ TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF P. VIVAX SUB1 (TRICLINIC CRYSTAL TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.21.62; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: SUB1, PVC01_100035100, PVT01_100029100, PVW1_100050600; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SCHNEIDER 2 KEYWDS PLASMODIUM, SERINE PROTEASE, DRUG TARGET, MALARIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTINEZ,A.BOUILLON,F.BATISTA,P.M.ALZARI,J.C.BARALE,A.HAOUZ REVDAT 3 22-NOV-23 8COZ 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV REVDAT 2 09-AUG-23 8COZ 1 JRNL REVDAT 1 19-JUL-23 8COZ 0 JRNL AUTH M.MARTINEZ,F.A.BATISTA,M.MAUREL,A.BOUILLON,L.ORTEGA VARGA, JRNL AUTH 2 A.M.WEHENKEL,L.LE CHEVALIER-SONTAG,A.BLONDEL,A.HAOUZ, JRNL AUTH 3 J.F.HERNANDEZ,P.M.ALZARI,J.C.BARALE JRNL TITL 3D STRUCTURES OF THE PLASMODIUM VIVAX SUBTILISIN-LIKE DRUG JRNL TITL 2 TARGET SUB1 REVEAL CONFORMATIONAL CHANGES TO ACCOMMODATE A JRNL TITL 3 SUBSTRATE-DERIVED ALPHA-KETOAMIDE INHIBITOR. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 721 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 37428845 JRNL DOI 10.1107/S2059798323004710 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (21-NOV-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 118591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5929 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2372 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3052 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2260 REMARK 3 BIN R VALUE (WORKING SET) : 0.3025 REMARK 3 BIN FREE R VALUE : 0.3619 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.72 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 112 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 752 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42900 REMARK 3 B22 (A**2) : -0.68390 REMARK 3 B33 (A**2) : 0.25490 REMARK 3 B12 (A**2) : 0.58870 REMARK 3 B13 (A**2) : -1.47810 REMARK 3 B23 (A**2) : 0.53190 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.076 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.074 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.073 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.072 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5352 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7280 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1838 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 929 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5352 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 716 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5812 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.11 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.27 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 33.2087 -50.8279 -38.6520 REMARK 3 T TENSOR REMARK 3 T11: 0.0111 T22: -0.0335 REMARK 3 T33: -0.0242 T12: 0.0099 REMARK 3 T13: 0.0165 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.3969 L22: 0.3555 REMARK 3 L33: 0.2387 L12: 0.1738 REMARK 3 L13: -0.1012 L23: -0.1418 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.0064 S13: 0.0368 REMARK 3 S21: 0.0478 S22: -0.0092 S23: 0.0178 REMARK 3 S31: 0.0007 S32: -0.0067 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.3583 -59.7188 -6.5268 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: -0.0356 REMARK 3 T33: -0.0300 T12: 0.0043 REMARK 3 T13: 0.0150 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.7368 L22: 0.2193 REMARK 3 L33: 0.3447 L12: 0.1650 REMARK 3 L13: -0.1377 L23: -0.1665 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: 0.0153 S13: -0.0673 REMARK 3 S21: -0.0297 S22: 0.0106 S23: -0.0450 REMARK 3 S31: 0.0030 S32: -0.0176 S33: 0.0597 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8COZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292128949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118611 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.438 REMARK 200 RESOLUTION RANGE LOW (A) : 42.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M LISO4, 15% W/V PEG8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 273 REMARK 465 THR A 274 REMARK 465 LYS A 275 REMARK 465 GLY A 276 REMARK 465 TYR A 277 REMARK 465 ASP A 468 REMARK 465 LYS A 469 REMARK 465 LEU A 470 REMARK 465 SER A 471 REMARK 465 LYS A 472 REMARK 465 THR B 273 REMARK 465 THR B 274 REMARK 465 LYS B 275 REMARK 465 GLY B 276 REMARK 465 TYR B 277 REMARK 465 LYS B 469 REMARK 465 LEU B 470 REMARK 465 SER B 471 REMARK 465 LYS B 472 REMARK 465 PRO B 473 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 316 -147.26 -164.41 REMARK 500 ASN A 370 -83.89 -108.56 REMARK 500 TYR A 371 -29.52 155.93 REMARK 500 SER A 463 164.33 90.41 REMARK 500 SER A 520 127.06 173.91 REMARK 500 ASP B 316 -148.60 -166.56 REMARK 500 ASN B 370 -84.31 -108.67 REMARK 500 TYR B 371 -28.38 156.30 REMARK 500 SER B 463 164.32 89.69 REMARK 500 ASP B 508 57.74 -109.02 REMARK 500 SER B 520 126.19 174.72 REMARK 500 MET B 539 43.78 71.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1182 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1183 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B1169 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 281 OD2 REMARK 620 2 ASP A 325 OD1 157.3 REMARK 620 3 ASP A 325 OD2 149.7 52.1 REMARK 620 4 VAL A 383 O 88.4 88.4 105.0 REMARK 620 5 ASN A 386 OD1 77.9 79.4 130.0 82.5 REMARK 620 6 ILE A 388 O 88.3 89.8 83.8 167.2 84.7 REMARK 620 7 ILE A 390 O 81.8 119.7 74.0 80.6 153.9 111.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 336 OE1 REMARK 620 2 ARG A 340 O 172.0 REMARK 620 3 VAL A 343 O 93.7 94.1 REMARK 620 4 ASP A 345 OD1 84.9 93.9 83.6 REMARK 620 5 ASP A 352 OD1 92.7 89.5 88.6 171.7 REMARK 620 6 HOH A 871 O 87.0 85.4 176.3 100.1 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 336 OE2 REMARK 620 2 ASP A 344 OD1 98.7 REMARK 620 3 ASP A 346 OD1 89.2 81.1 REMARK 620 4 ASN A 348 OD1 175.0 84.9 88.0 REMARK 620 5 VAL A 350 O 94.4 81.0 162.0 89.6 REMARK 620 6 ASP A 353 OD1 84.8 162.9 115.8 92.8 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 281 OD2 REMARK 620 2 ASP B 325 OD1 155.9 REMARK 620 3 ASP B 325 OD2 150.2 52.9 REMARK 620 4 VAL B 383 O 88.7 88.3 105.0 REMARK 620 5 ASN B 386 OD1 76.9 79.0 130.4 82.2 REMARK 620 6 ILE B 388 O 87.1 90.1 84.9 166.1 84.0 REMARK 620 7 ILE B 390 O 82.5 120.6 74.1 80.8 153.4 111.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 336 OE1 REMARK 620 2 ARG B 340 O 175.8 REMARK 620 3 VAL B 343 O 89.4 93.2 REMARK 620 4 ASP B 345 OD1 83.5 93.6 80.6 REMARK 620 5 ASP B 352 OD1 92.7 90.9 86.1 166.1 REMARK 620 6 HOH B 854 O 91.1 86.6 175.9 103.6 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 336 OE2 REMARK 620 2 ASP B 344 OD1 97.0 REMARK 620 3 ASP B 346 OD1 90.6 80.8 REMARK 620 4 ASN B 348 OD1 177.3 85.0 88.0 REMARK 620 5 VAL B 350 O 94.1 79.5 160.2 88.0 REMARK 620 6 ASP B 353 OD1 86.3 160.9 118.1 92.4 81.5 REMARK 620 N 1 2 3 4 5 DBREF 8COZ A 273 617 UNP E6Y8B9 E6Y8B9_PLAVI 273 617 DBREF 8COZ B 273 617 UNP E6Y8B9 E6Y8B9_PLAVI 273 617 SEQADV 8COZ SER A 361 UNP E6Y8B9 ASN 361 ENGINEERED MUTATION SEQADV 8COZ SER A 432 UNP E6Y8B9 ASN 432 ENGINEERED MUTATION SEQADV 8COZ SER A 445 UNP E6Y8B9 ASN 445 ENGINEERED MUTATION SEQADV 8COZ SER B 361 UNP E6Y8B9 ASN 361 ENGINEERED MUTATION SEQADV 8COZ SER B 432 UNP E6Y8B9 ASN 432 ENGINEERED MUTATION SEQADV 8COZ SER B 445 UNP E6Y8B9 ASN 445 ENGINEERED MUTATION SEQRES 1 A 345 THR THR LYS GLY TYR LYS PHE ASN ASP GLU TYR ARG ASN SEQRES 2 A 345 LEU GLN TRP GLY LEU ASP LEU ALA ARG LEU ASP GLU THR SEQRES 3 A 345 GLN ASP LEU ILE ASN ALA ASN ARG VAL SER VAL THR LYS SEQRES 4 A 345 ILE CYS VAL ILE ASP SER GLY ILE ASP TYR ASN HIS PRO SEQRES 5 A 345 ASP LEU ARG ASN ASN ILE ASP VAL ASN VAL LYS GLU LEU SEQRES 6 A 345 HIS GLY ARG LYS GLY VAL ASP ASP ASP SER ASN GLY VAL SEQRES 7 A 345 VAL ASP ASP VAL TYR GLY ALA ASN PHE VAL SER ASN SER SEQRES 8 A 345 GLY ASP PRO MET ASP ASP ASN TYR HIS GLY THR HIS VAL SEQRES 9 A 345 SER GLY ILE ILE SER ALA VAL GLY ASN ASN GLY ILE GLY SEQRES 10 A 345 ILE VAL GLY VAL ASP GLY HIS SER LYS LEU VAL ILE CYS SEQRES 11 A 345 LYS ALA LEU ASP GLN HIS LYS LEU GLY ARG LEU GLY ASP SEQRES 12 A 345 MET PHE LYS CYS ILE ASP TYR CYS ILE SER ARG GLN ALA SEQRES 13 A 345 HIS MET ILE SER GLY SER PHE SER PHE ASP GLU TYR SER SEQRES 14 A 345 ASN ILE PHE SER ALA SER VAL GLU HIS LEU ARG SER LEU SEQRES 15 A 345 GLY ILE LEU PHE PHE VAL SER ALA SER ASN CYS ALA HIS SEQRES 16 A 345 ASP LYS LEU SER LYS PRO ASP ILE ALA LYS CYS ASP LEU SEQRES 17 A 345 ALA VAL ASN HIS ARG TYR PRO PRO ILE LEU SER LYS THR SEQRES 18 A 345 HIS ASN ASN VAL ILE ALA VAL ALA ASN LEU LYS ARG ASP SEQRES 19 A 345 LEU ASP GLU SER TYR SER LEU SER VAL ASN SER PHE TYR SEQRES 20 A 345 SER ASN ILE TYR CYS GLN LEU ALA ALA PRO GLY THR ASN SEQRES 21 A 345 ILE TYR SER THR THR PRO MET ASN ASN TYR ARG LYS LEU SEQRES 22 A 345 ASN GLY THR SER MET ALA SER PRO HIS VAL ALA ALA ILE SEQRES 23 A 345 ALA SER ILE VAL ARG SER ILE ASN PRO ASN LEU THR TYR SEQRES 24 A 345 LEU GLN ILE VAL GLU ILE LEU ARG ASN ALA ILE VAL LYS SEQRES 25 A 345 LEU PRO SER LEU THR GLU ARG VAL SER TRP GLY GLY TYR SEQRES 26 A 345 VAL ASP ILE LEU ARG ALA VAL ASN LEU ALA ILE ASP SER SEQRES 27 A 345 LYS ALA ALA PRO TYR ILE LYS SEQRES 1 B 345 THR THR LYS GLY TYR LYS PHE ASN ASP GLU TYR ARG ASN SEQRES 2 B 345 LEU GLN TRP GLY LEU ASP LEU ALA ARG LEU ASP GLU THR SEQRES 3 B 345 GLN ASP LEU ILE ASN ALA ASN ARG VAL SER VAL THR LYS SEQRES 4 B 345 ILE CYS VAL ILE ASP SER GLY ILE ASP TYR ASN HIS PRO SEQRES 5 B 345 ASP LEU ARG ASN ASN ILE ASP VAL ASN VAL LYS GLU LEU SEQRES 6 B 345 HIS GLY ARG LYS GLY VAL ASP ASP ASP SER ASN GLY VAL SEQRES 7 B 345 VAL ASP ASP VAL TYR GLY ALA ASN PHE VAL SER ASN SER SEQRES 8 B 345 GLY ASP PRO MET ASP ASP ASN TYR HIS GLY THR HIS VAL SEQRES 9 B 345 SER GLY ILE ILE SER ALA VAL GLY ASN ASN GLY ILE GLY SEQRES 10 B 345 ILE VAL GLY VAL ASP GLY HIS SER LYS LEU VAL ILE CYS SEQRES 11 B 345 LYS ALA LEU ASP GLN HIS LYS LEU GLY ARG LEU GLY ASP SEQRES 12 B 345 MET PHE LYS CYS ILE ASP TYR CYS ILE SER ARG GLN ALA SEQRES 13 B 345 HIS MET ILE SER GLY SER PHE SER PHE ASP GLU TYR SER SEQRES 14 B 345 ASN ILE PHE SER ALA SER VAL GLU HIS LEU ARG SER LEU SEQRES 15 B 345 GLY ILE LEU PHE PHE VAL SER ALA SER ASN CYS ALA HIS SEQRES 16 B 345 ASP LYS LEU SER LYS PRO ASP ILE ALA LYS CYS ASP LEU SEQRES 17 B 345 ALA VAL ASN HIS ARG TYR PRO PRO ILE LEU SER LYS THR SEQRES 18 B 345 HIS ASN ASN VAL ILE ALA VAL ALA ASN LEU LYS ARG ASP SEQRES 19 B 345 LEU ASP GLU SER TYR SER LEU SER VAL ASN SER PHE TYR SEQRES 20 B 345 SER ASN ILE TYR CYS GLN LEU ALA ALA PRO GLY THR ASN SEQRES 21 B 345 ILE TYR SER THR THR PRO MET ASN ASN TYR ARG LYS LEU SEQRES 22 B 345 ASN GLY THR SER MET ALA SER PRO HIS VAL ALA ALA ILE SEQRES 23 B 345 ALA SER ILE VAL ARG SER ILE ASN PRO ASN LEU THR TYR SEQRES 24 B 345 LEU GLN ILE VAL GLU ILE LEU ARG ASN ALA ILE VAL LYS SEQRES 25 B 345 LEU PRO SER LEU THR GLU ARG VAL SER TRP GLY GLY TYR SEQRES 26 B 345 VAL ASP ILE LEU ARG ALA VAL ASN LEU ALA ILE ASP SER SEQRES 27 B 345 LYS ALA ALA PRO TYR ILE LYS HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET NAG A 704 14 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 A 707 5 HET SO4 A 708 5 HET CA B 701 1 HET CA B 702 1 HET CA B 703 1 HET NAG B 704 14 HET SO4 B 705 5 HET SO4 B 706 5 HET SO4 B 707 5 HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 CA 6(CA 2+) FORMUL 6 NAG 2(C8 H15 N O6) FORMUL 7 SO4 7(O4 S 2-) FORMUL 18 HOH *752(H2 O) HELIX 1 AA1 TYR A 283 LEU A 286 5 4 HELIX 2 AA2 GLN A 287 ARG A 294 1 8 HELIX 3 AA3 LEU A 295 GLU A 297 5 3 HELIX 4 AA4 THR A 298 ARG A 306 1 9 HELIX 5 AA5 LEU A 326 ILE A 330 5 5 HELIX 6 AA6 ASN A 333 HIS A 338 1 6 HELIX 7 AA7 TYR A 371 ALA A 382 1 12 HELIX 8 AA8 ARG A 412 ARG A 426 1 15 HELIX 9 AA9 SER A 441 LEU A 454 1 14 HELIX 10 AB1 ILE A 475 ASP A 479 5 5 HELIX 11 AB2 PRO A 487 THR A 493 5 7 HELIX 12 AB3 GLY A 547 ASN A 566 1 20 HELIX 13 AB4 THR A 570 ALA A 581 1 12 HELIX 14 AB5 PRO A 586 THR A 589 5 4 HELIX 15 AB6 ASP A 599 ALA A 612 1 14 HELIX 16 AB7 TYR B 283 LEU B 286 5 4 HELIX 17 AB8 GLN B 287 ARG B 294 1 8 HELIX 18 AB9 LEU B 295 GLU B 297 5 3 HELIX 19 AC1 THR B 298 ARG B 306 1 9 HELIX 20 AC2 LEU B 326 ILE B 330 5 5 HELIX 21 AC3 ASN B 333 HIS B 338 1 6 HELIX 22 AC4 TYR B 371 ALA B 382 1 12 HELIX 23 AC5 ARG B 412 ARG B 426 1 15 HELIX 24 AC6 SER B 441 LEU B 454 1 14 HELIX 25 AC7 ILE B 475 ASP B 479 5 5 HELIX 26 AC8 PRO B 487 THR B 493 5 7 HELIX 27 AC9 GLY B 547 ASN B 566 1 20 HELIX 28 AD1 THR B 570 ALA B 581 1 12 HELIX 29 AD2 PRO B 586 THR B 589 5 4 HELIX 30 AD3 ASP B 599 ALA B 612 1 14 SHEET 1 AA1 7 GLY A 356 ASN A 358 0 SHEET 2 AA1 7 LYS A 398 LYS A 403 1 O LYS A 403 N ALA A 357 SHEET 3 AA1 7 LYS A 311 ASP A 316 1 N VAL A 314 O VAL A 400 SHEET 4 AA1 7 MET A 430 GLY A 433 1 O MET A 430 N CYS A 313 SHEET 5 AA1 7 LEU A 457 SER A 461 1 O PHE A 459 N ILE A 431 SHEET 6 AA1 7 VAL A 497 ARG A 505 1 O ILE A 498 N VAL A 460 SHEET 7 AA1 7 TYR A 511 LEU A 513 -1 O SER A 512 N LYS A 504 SHEET 1 AA2 7 GLY A 356 ASN A 358 0 SHEET 2 AA2 7 LYS A 398 LYS A 403 1 O LYS A 403 N ALA A 357 SHEET 3 AA2 7 LYS A 311 ASP A 316 1 N VAL A 314 O VAL A 400 SHEET 4 AA2 7 MET A 430 GLY A 433 1 O MET A 430 N CYS A 313 SHEET 5 AA2 7 LEU A 457 SER A 461 1 O PHE A 459 N ILE A 431 SHEET 6 AA2 7 VAL A 497 ARG A 505 1 O ILE A 498 N VAL A 460 SHEET 7 AA2 7 LEU A 526 PRO A 529 1 O ALA A 528 N LEU A 503 SHEET 1 AA3 2 ILE A 533 THR A 537 0 SHEET 2 AA3 2 ASN A 541 LEU A 545 -1 O LEU A 545 N ILE A 533 SHEET 1 AA4 2 ILE A 582 LYS A 584 0 SHEET 2 AA4 2 GLY A 596 VAL A 598 -1 O TYR A 597 N VAL A 583 SHEET 1 AA5 7 GLY B 356 ASN B 358 0 SHEET 2 AA5 7 LYS B 398 LYS B 403 1 O LYS B 403 N ALA B 357 SHEET 3 AA5 7 LYS B 311 ASP B 316 1 N VAL B 314 O VAL B 400 SHEET 4 AA5 7 MET B 430 GLY B 433 1 O MET B 430 N CYS B 313 SHEET 5 AA5 7 LEU B 457 SER B 461 1 O PHE B 459 N ILE B 431 SHEET 6 AA5 7 VAL B 497 ARG B 505 1 O ILE B 498 N VAL B 460 SHEET 7 AA5 7 TYR B 511 LEU B 513 -1 O SER B 512 N LYS B 504 SHEET 1 AA6 7 GLY B 356 ASN B 358 0 SHEET 2 AA6 7 LYS B 398 LYS B 403 1 O LYS B 403 N ALA B 357 SHEET 3 AA6 7 LYS B 311 ASP B 316 1 N VAL B 314 O VAL B 400 SHEET 4 AA6 7 MET B 430 GLY B 433 1 O MET B 430 N CYS B 313 SHEET 5 AA6 7 LEU B 457 SER B 461 1 O PHE B 459 N ILE B 431 SHEET 6 AA6 7 VAL B 497 ARG B 505 1 O ILE B 498 N VAL B 460 SHEET 7 AA6 7 LEU B 526 PRO B 529 1 O ALA B 528 N LEU B 503 SHEET 1 AA7 2 ILE B 533 THR B 537 0 SHEET 2 AA7 2 ASN B 541 LEU B 545 -1 O LEU B 545 N ILE B 533 SHEET 1 AA8 2 ILE B 582 LYS B 584 0 SHEET 2 AA8 2 GLY B 596 VAL B 598 -1 O TYR B 597 N VAL B 583 SSBOND 1 CYS A 313 CYS A 423 1555 1555 2.05 SSBOND 2 CYS A 402 CYS A 419 1555 1555 2.05 SSBOND 3 CYS A 465 CYS A 478 1555 1555 2.06 SSBOND 4 CYS B 313 CYS B 423 1555 1555 2.04 SSBOND 5 CYS B 402 CYS B 419 1555 1555 2.06 SSBOND 6 CYS B 465 CYS B 478 1555 1555 2.04 LINK ND2 ASN A 546 C1 NAG A 704 1555 1555 1.43 LINK ND2 ASN B 546 C1 NAG B 704 1555 1555 1.43 LINK OD2 ASP A 281 CA CA A 701 1555 1555 2.27 LINK OD1 ASP A 325 CA CA A 701 1555 1555 2.37 LINK OD2 ASP A 325 CA CA A 701 1555 1555 2.63 LINK OE1 GLU A 336 CA CA A 702 1555 1555 2.33 LINK OE2 GLU A 336 CA CA A 703 1555 1555 2.28 LINK O ARG A 340 CA CA A 702 1555 1555 2.34 LINK O VAL A 343 CA CA A 702 1555 1555 2.35 LINK OD1 ASP A 344 CA CA A 703 1555 1555 2.28 LINK OD1 ASP A 345 CA CA A 702 1555 1555 2.26 LINK OD1 ASP A 346 CA CA A 703 1555 1555 2.36 LINK OD1 ASN A 348 CA CA A 703 1555 1555 2.37 LINK O VAL A 350 CA CA A 703 1555 1555 2.28 LINK OD1 ASP A 352 CA CA A 702 1555 1555 2.29 LINK OD1 ASP A 353 CA CA A 703 1555 1555 2.40 LINK O VAL A 383 CA CA A 701 1555 1555 2.33 LINK OD1 ASN A 386 CA CA A 701 1555 1555 2.42 LINK O ILE A 388 CA CA A 701 1555 1555 2.37 LINK O ILE A 390 CA CA A 701 1555 1555 2.46 LINK CA CA A 702 O HOH A 871 1555 1555 2.34 LINK OD2 ASP B 281 CA CA B 703 1555 1555 2.30 LINK OD1 ASP B 325 CA CA B 703 1555 1555 2.38 LINK OD2 ASP B 325 CA CA B 703 1555 1555 2.59 LINK OE1 GLU B 336 CA CA B 701 1555 1555 2.36 LINK OE2 GLU B 336 CA CA B 702 1555 1555 2.27 LINK O ARG B 340 CA CA B 701 1555 1555 2.34 LINK O VAL B 343 CA CA B 701 1555 1555 2.41 LINK OD1 ASP B 344 CA CA B 702 1555 1555 2.29 LINK OD1 ASP B 345 CA CA B 701 1555 1555 2.32 LINK OD1 ASP B 346 CA CA B 702 1555 1555 2.32 LINK OD1 ASN B 348 CA CA B 702 1555 1555 2.39 LINK O VAL B 350 CA CA B 702 1555 1555 2.32 LINK OD1 ASP B 352 CA CA B 701 1555 1555 2.30 LINK OD1 ASP B 353 CA CA B 702 1555 1555 2.36 LINK O VAL B 383 CA CA B 703 1555 1555 2.34 LINK OD1 ASN B 386 CA CA B 703 1555 1555 2.44 LINK O ILE B 388 CA CA B 703 1555 1555 2.37 LINK O ILE B 390 CA CA B 703 1555 1555 2.42 LINK CA CA B 701 O HOH B 854 1555 1555 2.31 CISPEP 1 TYR A 486 PRO A 487 0 2.67 CISPEP 2 TYR B 486 PRO B 487 0 2.35 CRYST1 53.504 55.504 69.036 69.18 78.86 75.87 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018690 -0.004705 -0.002279 0.00000 SCALE2 0.000000 0.018579 -0.006363 0.00000 SCALE3 0.000000 0.000000 0.015605 0.00000