HEADER HYDROLASE 01-MAR-23 8CP0 TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF P. VIVAX SUB1 (TRIGONAL CRYSTAL TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.62; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: SUB1, PVC01_100035100, PVT01_100029100, PVW1_100050600; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SCHNEIDER 2 KEYWDS PLASMODIUM, SERINE PROTEASE, DRUG TARGET, MALARIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTINEZ,A.BOUILLON,F.BATISTA,P.M.ALZARI,J.C.BARALE,A.HAOUZ REVDAT 3 22-NOV-23 8CP0 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV REVDAT 2 09-AUG-23 8CP0 1 JRNL REVDAT 1 19-JUL-23 8CP0 0 JRNL AUTH M.MARTINEZ,F.A.BATISTA,M.MAUREL,A.BOUILLON,L.ORTEGA VARGA, JRNL AUTH 2 A.M.WEHENKEL,L.LE CHEVALIER-SONTAG,A.BLONDEL,A.HAOUZ, JRNL AUTH 3 J.F.HERNANDEZ,P.M.ALZARI,J.C.BARALE JRNL TITL 3D STRUCTURES OF THE PLASMODIUM VIVAX SUBTILISIN-LIKE DRUG JRNL TITL 2 TARGET SUB1 REVEAL CONFORMATIONAL CHANGES TO ACCOMMODATE A JRNL TITL 3 SUBSTRATE-DERIVED ALPHA-KETOAMIDE INHIBITOR. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 721 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 37428845 JRNL DOI 10.1107/S2059798323004710 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 8756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 415 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 422 REMARK 3 BIN R VALUE (WORKING SET) : 0.2453 REMARK 3 BIN FREE R VALUE : 0.4349 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.65 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2649 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.12980 REMARK 3 B22 (A**2) : -9.12980 REMARK 3 B33 (A**2) : 18.25960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.429 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.832 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2704 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3679 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 897 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 468 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2704 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 362 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2281 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.88 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -42.1603 21.4051 7.0369 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: -0.0753 REMARK 3 T33: -0.1665 T12: -0.0864 REMARK 3 T13: 0.0015 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.0567 L22: 0.7542 REMARK 3 L33: 1.9324 L12: 0.3941 REMARK 3 L13: -0.5973 L23: -0.5821 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0606 S13: 0.0008 REMARK 3 S21: 0.0028 S22: 0.1214 S23: 0.0136 REMARK 3 S31: -0.1456 S32: 0.0013 S33: -0.1138 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292128950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8758 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.2 M MGCL2, 25% W/V REMARK 280 PEG4000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.38533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.69267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.69267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.38533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 244 REMARK 465 SER A 245 REMARK 465 GLY A 246 REMARK 465 SER A 247 REMARK 465 PRO A 248 REMARK 465 PHE A 249 REMARK 465 ASP A 250 REMARK 465 ASP A 251 REMARK 465 ASP A 252 REMARK 465 ASP A 253 REMARK 465 ASP A 254 REMARK 465 LEU A 255 REMARK 465 LEU A 256 REMARK 465 SER A 257 REMARK 465 GLU A 258 REMARK 465 ALA A 259 REMARK 465 ALA A 260 REMARK 465 LEU A 261 REMARK 465 HIS A 262 REMARK 465 ARG A 263 REMARK 465 GLU A 264 REMARK 465 GLU A 265 REMARK 465 ALA A 266 REMARK 465 HIS A 267 REMARK 465 LEU A 268 REMARK 465 ALA A 269 REMARK 465 GLY A 270 REMARK 465 SER A 271 REMARK 465 LYS A 272 REMARK 465 THR A 273 REMARK 465 THR A 274 REMARK 465 LYS A 275 REMARK 465 GLY A 276 REMARK 465 LYS A 469 REMARK 465 LEU A 470 REMARK 465 SER A 471 REMARK 465 LYS A 472 REMARK 465 ASP A 508 REMARK 465 GLU A 509 REMARK 465 ARG A 630 REMARK 465 HIS A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 465 HIS A 634 REMARK 465 HIS A 635 REMARK 465 HIS A 636 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 GLU A 439 CG CD OE1 OE2 REMARK 470 ASN A 442 CG OD1 ND2 REMARK 470 ASP A 468 CG OD1 OD2 REMARK 470 ILE A 475 CG1 CG2 CD1 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 ASP A 506 CG OD1 OD2 REMARK 470 ARG A 543 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 LYS A 625 CG CD CE NZ REMARK 470 SER A 628 OG REMARK 470 ARG A 629 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 297 25.58 -75.87 REMARK 500 ASP A 316 -150.31 -152.76 REMARK 500 PRO A 366 37.62 -89.89 REMARK 500 ASN A 370 -155.21 -131.94 REMARK 500 ASP A 406 -166.77 -79.98 REMARK 500 SER A 463 155.23 99.92 REMARK 500 ASN A 495 3.71 -68.14 REMARK 500 SER A 520 133.57 -170.06 REMARK 500 PRO A 529 108.50 -53.91 REMARK 500 PRO A 538 163.00 -42.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 281 OD2 REMARK 620 2 ASP A 325 OD1 165.9 REMARK 620 3 ASP A 325 OD2 136.0 54.2 REMARK 620 4 VAL A 383 O 88.0 97.3 109.2 REMARK 620 5 ASN A 386 OD1 87.3 80.8 134.4 80.2 REMARK 620 6 ILE A 388 O 84.4 87.7 84.4 165.9 87.6 REMARK 620 7 ILE A 390 O 71.3 122.5 73.3 77.8 149.6 110.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 336 OE2 REMARK 620 2 ASP A 344 OD1 92.5 REMARK 620 3 ASP A 346 OD1 84.9 93.0 REMARK 620 4 ASN A 348 OD1 172.9 82.2 90.6 REMARK 620 5 VAL A 350 O 95.9 71.5 164.5 87.0 REMARK 620 6 ASP A 353 OD1 92.8 148.2 118.8 94.2 76.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 336 OE1 REMARK 620 2 ARG A 340 O 175.1 REMARK 620 3 VAL A 343 O 77.5 97.6 REMARK 620 4 ASP A 345 OD1 83.0 94.8 71.0 REMARK 620 5 ASP A 352 OD1 96.5 83.3 81.7 152.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8COZ RELATED DB: PDB DBREF 8CP0 A 244 630 UNP E6Y8B9 E6Y8B9_PLAVI 244 630 SEQADV 8CP0 SER A 361 UNP E6Y8B9 ASN 361 ENGINEERED MUTATION SEQADV 8CP0 SER A 432 UNP E6Y8B9 ASN 432 ENGINEERED MUTATION SEQADV 8CP0 SER A 445 UNP E6Y8B9 ASN 445 ENGINEERED MUTATION SEQADV 8CP0 HIS A 631 UNP E6Y8B9 EXPRESSION TAG SEQADV 8CP0 HIS A 632 UNP E6Y8B9 EXPRESSION TAG SEQADV 8CP0 HIS A 633 UNP E6Y8B9 EXPRESSION TAG SEQADV 8CP0 HIS A 634 UNP E6Y8B9 EXPRESSION TAG SEQADV 8CP0 HIS A 635 UNP E6Y8B9 EXPRESSION TAG SEQADV 8CP0 HIS A 636 UNP E6Y8B9 EXPRESSION TAG SEQRES 1 A 393 SER SER GLY SER PRO PHE ASP ASP ASP ASP ASP LEU LEU SEQRES 2 A 393 SER GLU ALA ALA LEU HIS ARG GLU GLU ALA HIS LEU ALA SEQRES 3 A 393 GLY SER LYS THR THR LYS GLY TYR LYS PHE ASN ASP GLU SEQRES 4 A 393 TYR ARG ASN LEU GLN TRP GLY LEU ASP LEU ALA ARG LEU SEQRES 5 A 393 ASP GLU THR GLN ASP LEU ILE ASN ALA ASN ARG VAL SER SEQRES 6 A 393 VAL THR LYS ILE CYS VAL ILE ASP SER GLY ILE ASP TYR SEQRES 7 A 393 ASN HIS PRO ASP LEU ARG ASN ASN ILE ASP VAL ASN VAL SEQRES 8 A 393 LYS GLU LEU HIS GLY ARG LYS GLY VAL ASP ASP ASP SER SEQRES 9 A 393 ASN GLY VAL VAL ASP ASP VAL TYR GLY ALA ASN PHE VAL SEQRES 10 A 393 SER ASN SER GLY ASP PRO MET ASP ASP ASN TYR HIS GLY SEQRES 11 A 393 THR HIS VAL SER GLY ILE ILE SER ALA VAL GLY ASN ASN SEQRES 12 A 393 GLY ILE GLY ILE VAL GLY VAL ASP GLY HIS SER LYS LEU SEQRES 13 A 393 VAL ILE CYS LYS ALA LEU ASP GLN HIS LYS LEU GLY ARG SEQRES 14 A 393 LEU GLY ASP MET PHE LYS CYS ILE ASP TYR CYS ILE SER SEQRES 15 A 393 ARG GLN ALA HIS MET ILE SER GLY SER PHE SER PHE ASP SEQRES 16 A 393 GLU TYR SER ASN ILE PHE SER ALA SER VAL GLU HIS LEU SEQRES 17 A 393 ARG SER LEU GLY ILE LEU PHE PHE VAL SER ALA SER ASN SEQRES 18 A 393 CYS ALA HIS ASP LYS LEU SER LYS PRO ASP ILE ALA LYS SEQRES 19 A 393 CYS ASP LEU ALA VAL ASN HIS ARG TYR PRO PRO ILE LEU SEQRES 20 A 393 SER LYS THR HIS ASN ASN VAL ILE ALA VAL ALA ASN LEU SEQRES 21 A 393 LYS ARG ASP LEU ASP GLU SER TYR SER LEU SER VAL ASN SEQRES 22 A 393 SER PHE TYR SER ASN ILE TYR CYS GLN LEU ALA ALA PRO SEQRES 23 A 393 GLY THR ASN ILE TYR SER THR THR PRO MET ASN ASN TYR SEQRES 24 A 393 ARG LYS LEU ASN GLY THR SER MET ALA SER PRO HIS VAL SEQRES 25 A 393 ALA ALA ILE ALA SER ILE VAL ARG SER ILE ASN PRO ASN SEQRES 26 A 393 LEU THR TYR LEU GLN ILE VAL GLU ILE LEU ARG ASN ALA SEQRES 27 A 393 ILE VAL LYS LEU PRO SER LEU THR GLU ARG VAL SER TRP SEQRES 28 A 393 GLY GLY TYR VAL ASP ILE LEU ARG ALA VAL ASN LEU ALA SEQRES 29 A 393 ILE ASP SER LYS ALA ALA PRO TYR ILE LYS SER HIS SER SEQRES 30 A 393 TRP PHE ARG TRP LYS GLN GLY SER ARG ARG HIS HIS HIS SEQRES 31 A 393 HIS HIS HIS HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) HELIX 1 AA1 ASP A 281 ASN A 285 5 5 HELIX 2 AA2 GLN A 287 ALA A 293 1 7 HELIX 3 AA3 LEU A 295 GLU A 297 5 3 HELIX 4 AA4 THR A 298 ARG A 306 1 9 HELIX 5 AA5 LEU A 326 ILE A 330 5 5 HELIX 6 AA6 ASN A 333 HIS A 338 1 6 HELIX 7 AA7 TYR A 371 ALA A 382 1 12 HELIX 8 AA8 ARG A 412 ARG A 426 1 15 HELIX 9 AA9 SER A 441 LEU A 454 1 14 HELIX 10 AB1 ILE A 475 ASP A 479 5 5 HELIX 11 AB2 PRO A 487 LYS A 492 5 6 HELIX 12 AB3 GLY A 547 MET A 550 5 4 HELIX 13 AB4 ALA A 551 ASN A 566 1 16 HELIX 14 AB5 THR A 570 ALA A 581 1 12 HELIX 15 AB6 LEU A 585 GLU A 590 1 6 HELIX 16 AB7 ASP A 599 SER A 610 1 12 HELIX 17 AB8 SER A 618 GLN A 626 1 9 SHEET 1 AA1 7 GLY A 356 ASN A 358 0 SHEET 2 AA1 7 LYS A 398 LYS A 403 1 O LYS A 403 N ALA A 357 SHEET 3 AA1 7 LYS A 311 ASP A 316 1 N VAL A 314 O VAL A 400 SHEET 4 AA1 7 MET A 430 GLY A 433 1 O MET A 430 N CYS A 313 SHEET 5 AA1 7 LEU A 457 SER A 461 1 O LEU A 457 N ILE A 431 SHEET 6 AA1 7 VAL A 497 LYS A 504 1 O ILE A 498 N PHE A 458 SHEET 7 AA1 7 SER A 512 LEU A 513 -1 O SER A 512 N LYS A 504 SHEET 1 AA2 7 GLY A 356 ASN A 358 0 SHEET 2 AA2 7 LYS A 398 LYS A 403 1 O LYS A 403 N ALA A 357 SHEET 3 AA2 7 LYS A 311 ASP A 316 1 N VAL A 314 O VAL A 400 SHEET 4 AA2 7 MET A 430 GLY A 433 1 O MET A 430 N CYS A 313 SHEET 5 AA2 7 LEU A 457 SER A 461 1 O LEU A 457 N ILE A 431 SHEET 6 AA2 7 VAL A 497 LYS A 504 1 O ILE A 498 N PHE A 458 SHEET 7 AA2 7 LEU A 526 PRO A 529 1 O ALA A 528 N LEU A 503 SHEET 1 AA3 2 ILE A 533 THR A 537 0 SHEET 2 AA3 2 ASN A 541 LEU A 545 -1 O ASN A 541 N THR A 537 SHEET 1 AA4 2 ILE A 582 LYS A 584 0 SHEET 2 AA4 2 GLY A 596 VAL A 598 -1 O TYR A 597 N VAL A 583 LINK OD2 ASP A 281 CA CA A 701 1555 1555 2.21 LINK OD1 ASP A 325 CA CA A 701 1555 1555 2.34 LINK OD2 ASP A 325 CA CA A 701 1555 1555 2.47 LINK OE2 GLU A 336 CA CA A 702 1555 1555 2.14 LINK OE1 GLU A 336 CA CA A 703 1555 1555 2.36 LINK O ARG A 340 CA CA A 703 1555 1555 2.39 LINK O VAL A 343 CA CA A 703 1555 1555 2.55 LINK OD1 ASP A 344 CA CA A 702 1555 1555 2.45 LINK OD1 ASP A 345 CA CA A 703 1555 1555 2.19 LINK OD1 ASP A 346 CA CA A 702 1555 1555 2.13 LINK OD1 ASN A 348 CA CA A 702 1555 1555 2.15 LINK O VAL A 350 CA CA A 702 1555 1555 2.45 LINK OD1 ASP A 352 CA CA A 703 1555 1555 2.47 LINK OD1 ASP A 353 CA CA A 702 1555 1555 2.34 LINK O VAL A 383 CA CA A 701 1555 1555 2.24 LINK OD1 ASN A 386 CA CA A 701 1555 1555 2.48 LINK O ILE A 388 CA CA A 701 1555 1555 2.45 LINK O ILE A 390 CA CA A 701 1555 1555 2.62 CISPEP 1 TYR A 486 PRO A 487 0 6.79 CRYST1 89.150 89.150 119.078 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011217 0.006476 0.000000 0.00000 SCALE2 0.000000 0.012952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008398 0.00000