HEADER DNA BINDING PROTEIN 06-MAR-23 8CQN TITLE CRYSTAL STRUCTURE OF BORRELIA BURGDORFERI PARALOGOUS FAMILY 12 OUTER TITLE 2 SURFACE PROTEIN BBK01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE FIRST 4 RESIDUES (GAMG) ARE REMNANTS FROM THE COMPND 6 EXPRESSION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIELLA BURGDORFERI B31; SOURCE 3 ORGANISM_TAXID: 224326; SOURCE 4 GENE: BB_K01; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS PARALOGOUS PROTEIN, PFAM12, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.BRANGULIS,L.DRUNKA,S.MATISONE,I.AKOPJANA,K.TARS REVDAT 1 13-MAR-24 8CQN 0 JRNL AUTH K.BRANGULIS,L.DRUNKA,S.MATISONE,I.AKOPJANA,K.TARS JRNL TITL CRYSTAL STRUCTURE OF BORRELIA BURGDORFERI OUTER SURFACE JRNL TITL 2 PROTEIN BBK01 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 12602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 944 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3004 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.58000 REMARK 3 B22 (A**2) : 55.68000 REMARK 3 B33 (A**2) : -53.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 13.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.281 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.546 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3027 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3006 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4047 ; 1.674 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7017 ; 1.415 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.755 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.325 ;23.963 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;22.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.528 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3274 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 546 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8CQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 9.0 6% PEG 20 000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.53600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.06650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.53600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.06650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -82 REMARK 465 ALA A -81 REMARK 465 MET A -80 REMARK 465 GLY A -79 REMARK 465 ASN A -78 REMARK 465 LYS A -77 REMARK 465 GLU A -76 REMARK 465 GLN A -75 REMARK 465 LYS A -74 REMARK 465 ASN A -73 REMARK 465 ASN A -72 REMARK 465 ASN A -71 REMARK 465 ASN A -70 REMARK 465 VAL A -69 REMARK 465 LYS A -68 REMARK 465 GLU A -67 REMARK 465 VAL A -66 REMARK 465 SER A -65 REMARK 465 ASP A -64 REMARK 465 SER A -63 REMARK 465 VAL A -62 REMARK 465 GLN A -61 REMARK 465 GLU A -60 REMARK 465 ASP A -59 REMARK 465 GLY A -58 REMARK 465 LEU A -57 REMARK 465 ASN A -56 REMARK 465 ASP A -55 REMARK 465 LEU A -54 REMARK 465 TYR A -53 REMARK 465 ASN A -52 REMARK 465 ASN A -51 REMARK 465 GLN A -50 REMARK 465 GLU A -49 REMARK 465 LYS A -48 REMARK 465 GLN A -47 REMARK 465 LYS A -46 REMARK 465 SER A -45 REMARK 465 PHE A -44 REMARK 465 THR A -43 REMARK 465 LYS A -42 REMARK 465 ASN A -41 REMARK 465 PHE A -40 REMARK 465 GLY A -39 REMARK 465 GLU A -38 REMARK 465 ARG A -37 REMARK 465 LYS A -36 REMARK 465 TYR A -35 REMARK 465 GLU A -34 REMARK 465 ASP A -33 REMARK 465 LEU A -32 REMARK 465 ILE A -31 REMARK 465 ASN A -30 REMARK 465 PRO A -29 REMARK 465 ILE A -28 REMARK 465 GLU A -27 REMARK 465 PRO A -26 REMARK 465 ILE A -25 REMARK 465 ILE A -24 REMARK 465 PRO A -23 REMARK 465 SER A -22 REMARK 465 GLU A -21 REMARK 465 SER A -20 REMARK 465 PRO A -19 REMARK 465 LYS A -18 REMARK 465 ASN A -17 REMARK 465 LYS A -16 REMARK 465 ALA A -15 REMARK 465 ASN A -14 REMARK 465 ILE A -13 REMARK 465 PRO A -12 REMARK 465 ASN A -11 REMARK 465 ILE A -10 REMARK 465 SER A -9 REMARK 465 ILE A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 THR A -5 REMARK 465 GLU A -4 REMARK 465 LYS A -3 REMARK 465 LYS A -2 REMARK 465 GLU A -1 REMARK 465 THR A 0 REMARK 465 LYS A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 190 REMARK 465 LYS A 191 REMARK 465 LYS A 192 REMARK 465 GLY B -82 REMARK 465 ALA B -81 REMARK 465 MET B -80 REMARK 465 GLY B -79 REMARK 465 ASN B -78 REMARK 465 LYS B -77 REMARK 465 GLU B -76 REMARK 465 GLN B -75 REMARK 465 LYS B -74 REMARK 465 ASN B -73 REMARK 465 ASN B -72 REMARK 465 ASN B -71 REMARK 465 ASN B -70 REMARK 465 VAL B -69 REMARK 465 LYS B -68 REMARK 465 GLU B -67 REMARK 465 VAL B -66 REMARK 465 SER B -65 REMARK 465 ASP B -64 REMARK 465 SER B -63 REMARK 465 VAL B -62 REMARK 465 GLN B -61 REMARK 465 GLU B -60 REMARK 465 ASP B -59 REMARK 465 GLY B -58 REMARK 465 LEU B -57 REMARK 465 ASN B -56 REMARK 465 ASP B -55 REMARK 465 LEU B -54 REMARK 465 TYR B -53 REMARK 465 ASN B -52 REMARK 465 ASN B -51 REMARK 465 GLN B -50 REMARK 465 GLU B -49 REMARK 465 LYS B -48 REMARK 465 GLN B -47 REMARK 465 LYS B -46 REMARK 465 SER B -45 REMARK 465 PHE B -44 REMARK 465 THR B -43 REMARK 465 LYS B -42 REMARK 465 ASN B -41 REMARK 465 PHE B -40 REMARK 465 GLY B -39 REMARK 465 GLU B -38 REMARK 465 ARG B -37 REMARK 465 LYS B -36 REMARK 465 TYR B -35 REMARK 465 GLU B -34 REMARK 465 ASP B -33 REMARK 465 LEU B -32 REMARK 465 ILE B -31 REMARK 465 ASN B -30 REMARK 465 PRO B -29 REMARK 465 ILE B -28 REMARK 465 GLU B -27 REMARK 465 PRO B -26 REMARK 465 ILE B -25 REMARK 465 ILE B -24 REMARK 465 PRO B -23 REMARK 465 SER B -22 REMARK 465 GLU B -21 REMARK 465 SER B -20 REMARK 465 PRO B -19 REMARK 465 LYS B -18 REMARK 465 ASN B -17 REMARK 465 LYS B -16 REMARK 465 ALA B -15 REMARK 465 ASN B -14 REMARK 465 ILE B -13 REMARK 465 PRO B -12 REMARK 465 ASN B -11 REMARK 465 ILE B -10 REMARK 465 SER B -9 REMARK 465 ILE B -8 REMARK 465 ALA B -7 REMARK 465 HIS B -6 REMARK 465 THR B -5 REMARK 465 GLU B -4 REMARK 465 LYS B -3 REMARK 465 LYS B -2 REMARK 465 GLU B -1 REMARK 465 THR B 0 REMARK 465 LYS B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 54 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 54 OD1 ASP A 150 4556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 29 CB - CA - C ANGL. DEV. = 13.9 DEGREES REMARK 500 ASN B 74 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 6 136.75 -37.67 REMARK 500 SER A 8 -54.82 -125.73 REMARK 500 ASN A 25 -19.73 -146.15 REMARK 500 SER A 30 90.19 -161.54 REMARK 500 ASN A 70 51.52 -153.41 REMARK 500 ILE A 166 -70.44 -58.57 REMARK 500 LYS B 28 63.14 69.47 REMARK 500 ASN B 62 -81.80 -95.91 REMARK 500 LYS B 63 6.75 -51.70 REMARK 500 LEU B 67 8.54 53.21 REMARK 500 ASN B 73 62.40 73.09 REMARK 500 ASN B 74 -48.83 -29.21 REMARK 500 ASN B 190 33.92 -76.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CQN A -78 192 UNP O50805 O50805_BORBU 27 297 DBREF 8CQN B -78 192 UNP O50805 O50805_BORBU 27 297 SEQADV 8CQN GLY A -82 UNP O50805 EXPRESSION TAG SEQADV 8CQN ALA A -81 UNP O50805 EXPRESSION TAG SEQADV 8CQN MET A -80 UNP O50805 EXPRESSION TAG SEQADV 8CQN GLY A -79 UNP O50805 EXPRESSION TAG SEQADV 8CQN GLY B -82 UNP O50805 EXPRESSION TAG SEQADV 8CQN ALA B -81 UNP O50805 EXPRESSION TAG SEQADV 8CQN MET B -80 UNP O50805 EXPRESSION TAG SEQADV 8CQN GLY B -79 UNP O50805 EXPRESSION TAG SEQRES 1 A 275 GLY ALA MET GLY ASN LYS GLU GLN LYS ASN ASN ASN ASN SEQRES 2 A 275 VAL LYS GLU VAL SER ASP SER VAL GLN GLU ASP GLY LEU SEQRES 3 A 275 ASN ASP LEU TYR ASN ASN GLN GLU LYS GLN LYS SER PHE SEQRES 4 A 275 THR LYS ASN PHE GLY GLU ARG LYS TYR GLU ASP LEU ILE SEQRES 5 A 275 ASN PRO ILE GLU PRO ILE ILE PRO SER GLU SER PRO LYS SEQRES 6 A 275 ASN LYS ALA ASN ILE PRO ASN ILE SER ILE ALA HIS THR SEQRES 7 A 275 GLU LYS LYS GLU THR LYS LYS GLU ASN LEU ILE PRO SER SEQRES 8 A 275 THR ASN GLU GLU LYS GLU ALA ASP ALA ALA ILE LYS TYR SEQRES 9 A 275 LEU GLU GLU ASN ILE LEU LYS ASN SER LYS PHE SER GLU SEQRES 10 A 275 LEU ILE ARG GLU VAL ARG VAL ILE LYS ASP GLU TYR ALA SEQRES 11 A 275 LEU ILE LYS ALA ASP LEU TYR ASP VAL ILE GLY LYS ILE SEQRES 12 A 275 ASN ASN LYS LYS THR SER LEU MET GLU ASN PRO LYS ASN SEQRES 13 A 275 ASN ARG ASP LYS ILE ASN LYS LEU THR GLN LEU LEU GLN SEQRES 14 A 275 ASN ASN LEU LYS ILE ASP SER GLU LEU GLU GLN LEU ILE SEQRES 15 A 275 ASN MET ILE ASP MET ALA GLU ASN GLU ILE SER SER ALA SEQRES 16 A 275 ALA PHE PHE PHE ASP ASN ALA GLN LYS ARG LEU LYS GLU SEQRES 17 A 275 SER ILE ILE LYS ARG LEU GLU SER LYS ASN ASN ARG SER SEQRES 18 A 275 TYR ALA LEU LYS LEU SER ARG GLN ALA LEU SER ASP ALA SEQRES 19 A 275 ARG SER ALA LEU SER ASN LEU GLU SER PHE ALA SER LYS SEQRES 20 A 275 ARG ILE GLU PRO MET VAL ARG LYS GLU GLU ILE LYS GLU SEQRES 21 A 275 LEU ILE LYS HIS ALA LYS THR VAL LEU GLU SER LEU ASN SEQRES 22 A 275 LYS LYS SEQRES 1 B 275 GLY ALA MET GLY ASN LYS GLU GLN LYS ASN ASN ASN ASN SEQRES 2 B 275 VAL LYS GLU VAL SER ASP SER VAL GLN GLU ASP GLY LEU SEQRES 3 B 275 ASN ASP LEU TYR ASN ASN GLN GLU LYS GLN LYS SER PHE SEQRES 4 B 275 THR LYS ASN PHE GLY GLU ARG LYS TYR GLU ASP LEU ILE SEQRES 5 B 275 ASN PRO ILE GLU PRO ILE ILE PRO SER GLU SER PRO LYS SEQRES 6 B 275 ASN LYS ALA ASN ILE PRO ASN ILE SER ILE ALA HIS THR SEQRES 7 B 275 GLU LYS LYS GLU THR LYS LYS GLU ASN LEU ILE PRO SER SEQRES 8 B 275 THR ASN GLU GLU LYS GLU ALA ASP ALA ALA ILE LYS TYR SEQRES 9 B 275 LEU GLU GLU ASN ILE LEU LYS ASN SER LYS PHE SER GLU SEQRES 10 B 275 LEU ILE ARG GLU VAL ARG VAL ILE LYS ASP GLU TYR ALA SEQRES 11 B 275 LEU ILE LYS ALA ASP LEU TYR ASP VAL ILE GLY LYS ILE SEQRES 12 B 275 ASN ASN LYS LYS THR SER LEU MET GLU ASN PRO LYS ASN SEQRES 13 B 275 ASN ARG ASP LYS ILE ASN LYS LEU THR GLN LEU LEU GLN SEQRES 14 B 275 ASN ASN LEU LYS ILE ASP SER GLU LEU GLU GLN LEU ILE SEQRES 15 B 275 ASN MET ILE ASP MET ALA GLU ASN GLU ILE SER SER ALA SEQRES 16 B 275 ALA PHE PHE PHE ASP ASN ALA GLN LYS ARG LEU LYS GLU SEQRES 17 B 275 SER ILE ILE LYS ARG LEU GLU SER LYS ASN ASN ARG SER SEQRES 18 B 275 TYR ALA LEU LYS LEU SER ARG GLN ALA LEU SER ASP ALA SEQRES 19 B 275 ARG SER ALA LEU SER ASN LEU GLU SER PHE ALA SER LYS SEQRES 20 B 275 ARG ILE GLU PRO MET VAL ARG LYS GLU GLU ILE LYS GLU SEQRES 21 B 275 LEU ILE LYS HIS ALA LYS THR VAL LEU GLU SER LEU ASN SEQRES 22 B 275 LYS LYS HELIX 1 AA1 THR A 9 ILE A 26 1 18 HELIX 2 AA2 LYS A 31 MET A 68 1 38 HELIX 3 AA3 ASN A 74 ARG A 165 1 92 HELIX 4 AA4 ARG A 165 ALA A 182 1 18 HELIX 5 AA5 ALA A 182 SER A 188 1 7 HELIX 6 AA6 THR B 9 ILE B 26 1 18 HELIX 7 AA7 LYS B 31 LYS B 64 1 34 HELIX 8 AA8 ARG B 75 ASN B 88 1 14 HELIX 9 AA9 LEU B 89 SER B 163 1 75 HELIX 10 AB1 ARG B 165 ASN B 190 1 26 CRYST1 99.072 52.133 95.018 90.00 90.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010094 0.000000 0.000070 0.00000 SCALE2 0.000000 0.019182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010525 0.00000