HEADER OXIDOREDUCTASE 07-MAR-23 8CQT TITLE FLAVIN MONONUCLEOTIDE-DEPENDENT NITROREDUCTASE B.THETAIOTAOMICRON TITLE 2 (BT_1316) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NADH DEHYDROGENASE/NAD(P)H NITROREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_1316; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NITROREDUCTASE, FLAVIN MONONUCLEOTIDE DEPENDENT, NADH DEHYDROGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BLAHA,L.ADAM,K.S.H.BECKHAM,G.CHOJNOWSKI,M.WILMANNS,M.ZIMMERMANN REVDAT 1 27-MAR-24 8CQT 0 JRNL AUTH J.BLAHA,L.ADAM,S.GRATZL,G.CHOJNOWSKI,C.LITZ,S.A.MORTENSEN, JRNL AUTH 2 M.ZIMMERMANN,K.S.H.BECKHAM,M.WILMANNS JRNL TITL STRUCTURAL INSIGHTS INTO THE DIVERSITY OF NITROREDUCTASE JRNL TITL 2 ENZYMES IN BACTEROIDES THETAIOTAOMICRON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.843 REMARK 3 FREE R VALUE TEST SET COUNT : 854 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1209 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.1510 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2564 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75500 REMARK 3 B22 (A**2) : 0.39600 REMARK 3 B33 (A**2) : 2.35900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2674 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2601 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3608 ; 1.879 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6053 ; 0.605 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ;10.562 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;17.307 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2939 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 497 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 500 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 46 ; 0.161 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1295 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1304 ; 3.202 ; 2.355 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1304 ; 3.202 ; 2.355 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1623 ; 4.496 ; 3.508 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1624 ; 4.495 ; 3.508 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1370 ; 5.648 ; 3.056 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1367 ; 5.651 ; 3.058 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1985 ; 8.171 ; 4.268 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1986 ; 8.169 ; 4.267 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 179 NULL REMARK 3 1 A 4 A 179 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4130 -0.9697 6.7107 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0077 REMARK 3 T33: 0.0207 T12: -0.0026 REMARK 3 T13: -0.0117 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.4485 L22: 0.5875 REMARK 3 L33: 0.1044 L12: -0.2800 REMARK 3 L13: 0.1231 L23: 0.0926 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0182 S13: 0.0667 REMARK 3 S21: -0.0118 S22: -0.0247 S23: -0.0106 REMARK 3 S31: -0.0013 S32: -0.0205 S33: 0.0291 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 15.0812 -10.3404 17.9465 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0168 REMARK 3 T33: 0.0260 T12: -0.0040 REMARK 3 T13: -0.0020 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.8725 L22: 0.5750 REMARK 3 L33: 0.3966 L12: -0.6089 REMARK 3 L13: 0.5450 L23: -0.3661 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: -0.0481 S13: 0.1299 REMARK 3 S21: 0.0483 S22: -0.0109 S23: -0.1185 REMARK 3 S31: 0.0044 S32: -0.0439 S33: 0.0862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8CQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292126014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 (BUILT 20210323) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 90.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 90.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : 0.06900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.9.02 REMARK 200 STARTING MODEL: AF-Q8A858-F1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) PEG 1000, 0.1M CITRATE REMARK 280 PHOSPHATE BUFFER, PH 4.2, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.31300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.27150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.66650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.27150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.31300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.66650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 MET A 3 REMARK 465 ALA A 89 REMARK 465 ASN A 90 REMARK 465 ILE A 91 REMARK 465 THR A 92 REMARK 465 SER A 93 REMARK 465 LEU A 94 REMARK 465 LEU A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 LYS A 98 REMARK 465 VAL A 99 REMARK 465 LYS A 100 REMARK 465 ASP A 101 REMARK 465 LYS A 102 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 ALA B 89 REMARK 465 ASN B 90 REMARK 465 ILE B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 LEU B 94 REMARK 465 LEU B 95 REMARK 465 GLY B 96 REMARK 465 GLY B 97 REMARK 465 LYS B 98 REMARK 465 VAL B 99 REMARK 465 LYS B 100 REMARK 465 ASP B 101 REMARK 465 LYS B 102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 27 CD GLU B 27 OE1 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR B 180 CA - C - O ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 169 153.87 -45.56 REMARK 500 ASN A 178 19.20 58.19 REMARK 500 ARG A 179 136.13 -172.41 REMARK 500 GLU B 87 74.04 -115.95 REMARK 500 ASN B 178 -12.38 70.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 22 0.09 SIDE CHAIN REMARK 500 ARG A 149 0.10 SIDE CHAIN REMARK 500 ARG B 12 0.08 SIDE CHAIN REMARK 500 ARG B 37 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8CQT A 3 180 UNP Q8A858 Q8A858_BACTN 1 178 DBREF 8CQT B 3 180 UNP Q8A858 Q8A858_BACTN 1 178 SEQADV 8CQT GLY A 1 UNP Q8A858 EXPRESSION TAG SEQADV 8CQT PRO A 2 UNP Q8A858 EXPRESSION TAG SEQADV 8CQT GLY B 1 UNP Q8A858 EXPRESSION TAG SEQADV 8CQT PRO B 2 UNP Q8A858 EXPRESSION TAG SEQRES 1 A 180 GLY PRO MET ASP PHE LEU GLN LEU VAL LEU SER ARG GLN SEQRES 2 A 180 SER ASP ARG ALA TYR ASP LYS GLY ARG PRO VAL GLU ALA SEQRES 3 A 180 GLU LYS LEU GLU ARG ILE LEU GLU ALA ALA ARG LEU SER SEQRES 4 A 180 PRO SER ALA CYS ASN ALA GLN PRO TRP LYS PHE VAL VAL SEQRES 5 A 180 VAL THR ASP HIS GLU LEU ALA LEU LYS VAL GLY ARG ALA SEQRES 6 A 180 ALA ALA GLY LEU GLY MET ASN LYS PHE ALA LYS ASP ALA SEQRES 7 A 180 PRO VAL HIS ILE LEU ILE VAL GLU GLU SER ALA ASN ILE SEQRES 8 A 180 THR SER LEU LEU GLY GLY LYS VAL LYS ASP LYS HIS PHE SEQRES 9 A 180 PRO LEU ILE ASP ILE GLY ILE ALA ALA ALA HIS ILE THR SEQRES 10 A 180 LEU ALA ALA GLU SER GLU GLY LEU GLY SER CYS ILE LEU SEQRES 11 A 180 GLY TRP PHE ASP GLU LYS GLU ILE LYS GLN LEU THR GLY SEQRES 12 A 180 ILE PRO ALA SER LYS ARG LEU LEU LEU ASP ILE ALA ILE SEQRES 13 A 180 GLY TYR PRO VAL LYS GLU LYS ARG LYS LYS MET ARG LYS SEQRES 14 A 180 THR LYS GLU LYS VAL ILE SER TYR ASN ARG TYR SEQRES 1 B 180 GLY PRO MET ASP PHE LEU GLN LEU VAL LEU SER ARG GLN SEQRES 2 B 180 SER ASP ARG ALA TYR ASP LYS GLY ARG PRO VAL GLU ALA SEQRES 3 B 180 GLU LYS LEU GLU ARG ILE LEU GLU ALA ALA ARG LEU SER SEQRES 4 B 180 PRO SER ALA CYS ASN ALA GLN PRO TRP LYS PHE VAL VAL SEQRES 5 B 180 VAL THR ASP HIS GLU LEU ALA LEU LYS VAL GLY ARG ALA SEQRES 6 B 180 ALA ALA GLY LEU GLY MET ASN LYS PHE ALA LYS ASP ALA SEQRES 7 B 180 PRO VAL HIS ILE LEU ILE VAL GLU GLU SER ALA ASN ILE SEQRES 8 B 180 THR SER LEU LEU GLY GLY LYS VAL LYS ASP LYS HIS PHE SEQRES 9 B 180 PRO LEU ILE ASP ILE GLY ILE ALA ALA ALA HIS ILE THR SEQRES 10 B 180 LEU ALA ALA GLU SER GLU GLY LEU GLY SER CYS ILE LEU SEQRES 11 B 180 GLY TRP PHE ASP GLU LYS GLU ILE LYS GLN LEU THR GLY SEQRES 12 B 180 ILE PRO ALA SER LYS ARG LEU LEU LEU ASP ILE ALA ILE SEQRES 13 B 180 GLY TYR PRO VAL LYS GLU LYS ARG LYS LYS MET ARG LYS SEQRES 14 B 180 THR LYS GLU LYS VAL ILE SER TYR ASN ARG TYR HET FMN A 201 50 HET CL A 202 1 HET FMN B 201 50 HET CL B 202 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CL CHLORIDE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *119(H2 O) HELIX 1 AA1 ASP A 4 ARG A 12 1 9 HELIX 2 AA2 GLU A 25 LEU A 38 1 14 HELIX 3 AA3 SER A 41 ALA A 45 5 5 HELIX 4 AA4 ASP A 55 ALA A 66 1 12 HELIX 5 AA5 ASN A 72 ALA A 78 5 7 HELIX 6 AA6 PHE A 104 GLU A 123 1 20 HELIX 7 AA7 ASP A 134 GLY A 143 1 10 HELIX 8 AA8 THR A 170 VAL A 174 1 5 HELIX 9 AA9 ASP B 4 ARG B 12 1 9 HELIX 10 AB1 GLU B 25 LEU B 38 1 14 HELIX 11 AB2 SER B 41 ALA B 45 5 5 HELIX 12 AB3 ASP B 55 ALA B 67 1 13 HELIX 13 AB4 ASN B 72 ALA B 78 5 7 HELIX 14 AB5 PHE B 104 GLU B 123 1 20 HELIX 15 AB6 ASP B 134 GLY B 143 1 10 HELIX 16 AB7 THR B 170 VAL B 174 1 5 SHEET 1 AA1 5 GLY A 126 LEU A 130 0 SHEET 2 AA1 5 LEU A 150 GLY A 157 -1 O GLY A 157 N GLY A 126 SHEET 3 AA1 5 VAL A 80 GLU A 86 -1 N ILE A 84 O LEU A 152 SHEET 4 AA1 5 TRP A 48 VAL A 53 -1 N VAL A 51 O LEU A 83 SHEET 5 AA1 5 ILE B 175 TYR B 177 1 O SER B 176 N VAL A 52 SHEET 1 AA2 5 ILE A 175 TYR A 177 0 SHEET 2 AA2 5 TRP B 48 VAL B 53 1 O VAL B 52 N SER A 176 SHEET 3 AA2 5 VAL B 80 GLU B 86 -1 O LEU B 83 N VAL B 51 SHEET 4 AA2 5 LEU B 150 GLY B 157 -1 O LEU B 152 N ILE B 84 SHEET 5 AA2 5 GLY B 126 LEU B 130 -1 N GLY B 126 O GLY B 157 CRYST1 56.626 65.333 90.543 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011044 0.00000