HEADER OXIDOREDUCTASE 07-MAR-23 8CQV TITLE FLAVIN MONONUCLEOTIDE-DEPENDENT NITROREDUCTASE B.THETAIOTAOMICRON TITLE 2 (BT_3392) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_3392; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NITROREDUCTASE, FLAVIN MONONUCLEOTIDE DEPENDENT, NADH DEHYDROGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BLAHA,L.ADAM,K.S.H.BECKHAM,G.CHOJNOWSKI,M.WILMANNS,M.ZIMMERMANN REVDAT 1 27-MAR-24 8CQV 0 JRNL AUTH J.BLAHA,L.ADAM,S.GRAZTL,G.CHOJNOWSKI,C.LITZ,S.A.MORTENSEN, JRNL AUTH 2 M.ZIMMERMANN,K.S.H.BECKHAM,M.WILMANNS JRNL TITL STRUCTURAL INSIGHTS INTO THE DIVERSITY OF NITROREDUCTASE JRNL TITL 2 ENZYMES IN BACTEROIDES THETAIOTAOMICRON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.934 REMARK 3 FREE R VALUE TEST SET COUNT : 2125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3003 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3247 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 150 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78000 REMARK 3 B22 (A**2) : 0.93400 REMARK 3 B33 (A**2) : -0.00700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3582 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3241 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4850 ; 1.793 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7596 ; 0.695 ; 1.562 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 6.388 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ;12.083 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 589 ;14.757 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3995 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 701 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 736 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 51 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1703 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.194 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.061 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1662 ; 1.798 ; 1.499 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1662 ; 1.795 ; 1.499 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2095 ; 2.442 ; 2.244 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2096 ; 2.445 ; 2.245 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1920 ; 3.419 ; 1.967 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1921 ; 3.418 ; 1.969 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2755 ; 5.006 ; 2.740 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2756 ; 5.005 ; 2.741 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 201 1 REMARK 3 1 A 4 A 201 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8699 -0.4631 17.1145 REMARK 3 T TENSOR REMARK 3 T11: 0.0120 T22: 0.0174 REMARK 3 T33: 0.0223 T12: -0.0016 REMARK 3 T13: 0.0122 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.7017 L22: 0.3776 REMARK 3 L33: 0.7527 L12: -0.0953 REMARK 3 L13: 0.1600 L23: 0.1146 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.1306 S13: -0.0769 REMARK 3 S21: -0.0203 S22: 0.0385 S23: -0.0508 REMARK 3 S31: 0.0493 S32: 0.0622 S33: -0.0209 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 2.2729 -0.0104 20.6619 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.0284 REMARK 3 T33: 0.0373 T12: -0.0089 REMARK 3 T13: 0.0135 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.5141 L22: 0.3561 REMARK 3 L33: 0.6857 L12: 0.0081 REMARK 3 L13: 0.2322 L23: -0.1097 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0385 S13: -0.1375 REMARK 3 S21: 0.0142 S22: 0.0523 S23: 0.0659 REMARK 3 S31: 0.0339 S32: -0.1044 S33: -0.0452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8CQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292126227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 (BUILT 20210323) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43098 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 74.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 74.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.04700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.9.02 REMARK 200 STARTING MODEL: AF-Q8A2B3-F1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUFFER SYSTEM (IMIDAZOL, MES) 20% V/V REMARK 280 ETHYLEN GLYCOL, 10% V/V PEG 8000, 0.12M DIETHYLENE GLYCOL, 0.12M REMARK 280 TRIETHYLENE GLYCOL, 0.12M TETRAETHYLENE GLYCOL, 0.12M REMARK 280 PENTAETHYLENE GLYCOL, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.31150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 MET B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 17 O4 PEG B 304 1.56 REMARK 500 O HOH A 474 O HOH A 477 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 4 CD GLU B 4 OE2 -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 14 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 57.58 -95.14 REMARK 500 PHE A 46 15.69 59.46 REMARK 500 SER B 91 -88.93 -122.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 73 0.10 SIDE CHAIN REMARK 500 ARG A 197 0.11 SIDE CHAIN REMARK 500 ARG B 5 0.08 SIDE CHAIN REMARK 500 ARG B 40 0.09 SIDE CHAIN REMARK 500 ARG B 197 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 91 10.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 1 O REMARK 620 2 MET A 3 O 91.3 REMARK 620 3 ASP A 143 O 79.7 170.5 REMARK 620 4 ASP A 143 OD1 153.0 114.4 74.1 REMARK 620 5 HOH A 462 O 84.0 86.2 89.9 89.2 REMARK 620 6 GLU B 120 OE1 106.5 148.1 35.7 46.9 70.1 REMARK 620 N 1 2 3 4 5 DBREF 8CQV A 3 202 UNP Q8A2B3 Q8A2B3_BACTN 1 200 DBREF 8CQV B 3 202 UNP Q8A2B3 Q8A2B3_BACTN 1 200 SEQADV 8CQV GLY A 1 UNP Q8A2B3 EXPRESSION TAG SEQADV 8CQV PRO A 2 UNP Q8A2B3 EXPRESSION TAG SEQADV 8CQV GLY B 1 UNP Q8A2B3 EXPRESSION TAG SEQADV 8CQV PRO B 2 UNP Q8A2B3 EXPRESSION TAG SEQRES 1 A 202 GLY PRO MET GLU ARG THR PHE SER GLU ALA LEU LYS ASN SEQRES 2 A 202 ARG ARG THR TYR TYR SER ILE THR ASP GLN SER PRO ILE SEQRES 3 A 202 PRO ASP GLN GLU ILE GLU CYS ILE ILE ASN LEU ALA VAL SEQRES 4 A 202 ARG HIS VAL PRO SER ALA PHE ASN SER GLN SER THR ARG SEQRES 5 A 202 VAL VAL LEU LEU LEU GLY LYS SER HIS LYS LYS LEU TRP SEQRES 6 A 202 ASN ILE VAL LYS ASP ALA LEU ARG LYS ILE VAL PRO GLY SEQRES 7 A 202 GLU ALA PHE ALA LYS THR GLU GLU LYS ILE ASP ASN SER SEQRES 8 A 202 PHE ALA CYS GLY TYR GLY THR VAL LEU PHE PHE GLU ASP SEQRES 9 A 202 GLN LYS VAL VAL LYS GLY LEU GLN GLU ALA PHE PRO SER SEQRES 10 A 202 TYR GLN GLU ASN PHE PRO GLY TRP SER LEU GLN THR SER SEQRES 11 A 202 ALA MET HIS GLN LEU ALA VAL TRP VAL MET LEU GLU ASP SEQRES 12 A 202 VAL GLY PHE GLY ALA SER LEU GLN HIS TYR ASN PRO LEU SEQRES 13 A 202 ILE ASP ASP GLU VAL ARG ARG ALA TRP ASN LEU PRO ALA SEQRES 14 A 202 HIS TRP HIS LEU ILE ALA GLU MET PRO PHE GLY VAL PRO SEQRES 15 A 202 VAL ASN LYS PRO GLY GLU LYS GLU PHE GLN PRO LEU GLU SEQRES 16 A 202 GLU ARG ILE LYS VAL PHE LYS SEQRES 1 B 202 GLY PRO MET GLU ARG THR PHE SER GLU ALA LEU LYS ASN SEQRES 2 B 202 ARG ARG THR TYR TYR SER ILE THR ASP GLN SER PRO ILE SEQRES 3 B 202 PRO ASP GLN GLU ILE GLU CYS ILE ILE ASN LEU ALA VAL SEQRES 4 B 202 ARG HIS VAL PRO SER ALA PHE ASN SER GLN SER THR ARG SEQRES 5 B 202 VAL VAL LEU LEU LEU GLY LYS SER HIS LYS LYS LEU TRP SEQRES 6 B 202 ASN ILE VAL LYS ASP ALA LEU ARG LYS ILE VAL PRO GLY SEQRES 7 B 202 GLU ALA PHE ALA LYS THR GLU GLU LYS ILE ASP ASN SER SEQRES 8 B 202 PHE ALA CYS GLY TYR GLY THR VAL LEU PHE PHE GLU ASP SEQRES 9 B 202 GLN LYS VAL VAL LYS GLY LEU GLN GLU ALA PHE PRO SER SEQRES 10 B 202 TYR GLN GLU ASN PHE PRO GLY TRP SER LEU GLN THR SER SEQRES 11 B 202 ALA MET HIS GLN LEU ALA VAL TRP VAL MET LEU GLU ASP SEQRES 12 B 202 VAL GLY PHE GLY ALA SER LEU GLN HIS TYR ASN PRO LEU SEQRES 13 B 202 ILE ASP ASP GLU VAL ARG ARG ALA TRP ASN LEU PRO ALA SEQRES 14 B 202 HIS TRP HIS LEU ILE ALA GLU MET PRO PHE GLY VAL PRO SEQRES 15 B 202 VAL ASN LYS PRO GLY GLU LYS GLU PHE GLN PRO LEU GLU SEQRES 16 B 202 GLU ARG ILE LYS VAL PHE LYS HET NA A 301 1 HET FMN A 302 50 HET EDO A 303 9 HET PGE A 304 24 HET PEG A 305 17 HET PEG A 306 17 HET PEG A 307 17 HET PEG A 308 17 HET FMN B 301 50 HET PGE B 302 24 HET EDO B 303 9 HET PEG B 304 16 HET PEG B 305 17 HET PEG B 306 17 HET PGE B 307 23 HETNAM NA SODIUM ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NA NA 1+ FORMUL 4 FMN 2(C17 H21 N4 O9 P) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 PGE 3(C6 H14 O4) FORMUL 7 PEG 7(C4 H10 O3) FORMUL 18 HOH *145(H2 O) HELIX 1 AA1 THR A 6 ARG A 14 1 9 HELIX 2 AA2 PRO A 27 VAL A 42 1 16 HELIX 3 AA3 SER A 44 SER A 48 5 5 HELIX 4 AA4 GLY A 58 LYS A 74 1 17 HELIX 5 AA5 PRO A 77 PHE A 92 1 16 HELIX 6 AA6 GLN A 105 PHE A 115 1 11 HELIX 7 AA7 PRO A 116 GLN A 119 5 4 HELIX 8 AA8 ASN A 121 GLY A 145 1 25 HELIX 9 AA9 ILE A 157 ASN A 166 1 10 HELIX 10 AB1 PRO A 193 GLU A 196 5 4 HELIX 11 AB2 THR B 6 ARG B 14 1 9 HELIX 12 AB3 PRO B 27 VAL B 42 1 16 HELIX 13 AB4 SER B 44 SER B 48 5 5 HELIX 14 AB5 GLY B 58 VAL B 76 1 19 HELIX 15 AB6 PRO B 77 SER B 91 1 15 HELIX 16 AB7 PHE B 92 GLY B 95 5 4 HELIX 17 AB8 GLN B 105 PHE B 115 1 11 HELIX 18 AB9 PRO B 116 GLN B 119 5 4 HELIX 19 AC1 ASN B 121 VAL B 144 1 24 HELIX 20 AC2 ILE B 157 TRP B 165 1 9 SHEET 1 AA1 3 ILE A 20 THR A 21 0 SHEET 2 AA1 3 TRP A 171 PRO A 182 -1 O VAL A 181 N THR A 21 SHEET 3 AA1 3 GLY A 147 ALA A 148 -1 N GLY A 147 O GLY A 180 SHEET 1 AA2 5 ILE A 20 THR A 21 0 SHEET 2 AA2 5 TRP A 171 PRO A 182 -1 O VAL A 181 N THR A 21 SHEET 3 AA2 5 GLY A 97 ASP A 104 -1 N PHE A 101 O ILE A 174 SHEET 4 AA2 5 THR A 51 LEU A 57 -1 N ARG A 52 O PHE A 102 SHEET 5 AA2 5 ILE B 198 PHE B 201 1 O LYS B 199 N LEU A 55 SHEET 1 AA3 5 ILE A 198 PHE A 201 0 SHEET 2 AA3 5 THR B 51 LEU B 57 1 O LEU B 55 N LYS A 199 SHEET 3 AA3 5 GLY B 97 ASP B 104 -1 O PHE B 102 N ARG B 52 SHEET 4 AA3 5 TRP B 171 PRO B 182 -1 O ILE B 174 N PHE B 101 SHEET 5 AA3 5 ILE B 20 THR B 21 -1 N THR B 21 O VAL B 181 SHEET 1 AA4 5 ILE A 198 PHE A 201 0 SHEET 2 AA4 5 THR B 51 LEU B 57 1 O LEU B 55 N LYS A 199 SHEET 3 AA4 5 GLY B 97 ASP B 104 -1 O PHE B 102 N ARG B 52 SHEET 4 AA4 5 TRP B 171 PRO B 182 -1 O ILE B 174 N PHE B 101 SHEET 5 AA4 5 GLY B 147 ALA B 148 -1 N GLY B 147 O GLY B 180 LINK O GLY A 1 NA NA A 301 1555 1555 2.47 LINK O MET A 3 NA NA A 301 1555 1555 2.17 LINK O ASP A 143 NA NA A 301 1555 1555 2.28 LINK OD1 ASP A 143 NA NA A 301 1555 1555 2.57 LINK NA NA A 301 O HOH A 462 1555 1555 2.62 LINK NA NA A 301 OE1 GLU B 120 1565 1555 2.35 CISPEP 1 ASN A 154 PRO A 155 0 5.34 CISPEP 2 ASN B 154 PRO B 155 0 1.28 CRYST1 64.894 40.623 75.497 90.00 100.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015410 0.000000 0.002716 0.00000 SCALE2 0.000000 0.024617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013450 0.00000