HEADER TRANSFERASE 08-MAR-23 8CRG TITLE E. COLI ADENYLATE KINASE IN COMPLEX WITH TWO ADP MOLECULES AS A RESULT TITLE 2 OF ENZYMATIC AP4A HYDROLYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK,ATP-AMP TRANSPHOSPHORYLASE,ATP:AMP PHOSPHOTRANSFERASE, COMPND 5 ADENYLATE MONOPHOSPHATE KINASE; COMPND 6 EC: 2.7.4.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: ADK, DNAW, PLSA, B0474, JW0463; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PHOSPHOTRANSFERASE, ENERGY METABOLISM, AP4A HYDROLYSIS, POTENTIAL KEYWDS 2 MOONLIGHTING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.OELKER,S.TISCHLIK,M.WOLF-WATZ,A.E.SAUER-ERIKSSON REVDAT 4 25-OCT-23 8CRG 1 REMARK DBREF SEQRES HELIX REVDAT 4 2 1 SHEET ATOM REVDAT 3 09-AUG-23 8CRG 1 JRNL REVDAT 2 19-JUL-23 8CRG 1 JRNL REVDAT 1 14-JUN-23 8CRG 0 JRNL AUTH S.TISCHLIK,M.OELKER,P.ROGNE,A.E.SAUER-ERIKSSON,M.DRESCHER, JRNL AUTH 2 M.WOLF-WATZ JRNL TITL INSIGHTS INTO ENZYMATIC CATALYSIS FROM BINDING AND JRNL TITL 2 HYDROLYSIS OF DIADENOSINE TETRAPHOSPHATE BY E. COLI JRNL TITL 3 ADENYLATE KINASE. JRNL REF BIOCHEMISTRY V. 62 2238 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37418448 JRNL DOI 10.1021/ACS.BIOCHEM.3C00189 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0.32 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 83049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2738 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2999 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8985 4.7806 4.4308 REMARK 3 T TENSOR REMARK 3 T11: 0.1791 T22: 0.1445 REMARK 3 T33: 0.1923 T12: 0.0066 REMARK 3 T13: 0.0088 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.3301 L22: 1.7108 REMARK 3 L33: 3.2011 L12: 0.2295 REMARK 3 L13: -0.5468 L23: -0.7908 REMARK 3 S TENSOR REMARK 3 S11: 0.1157 S12: -0.1595 S13: 0.2880 REMARK 3 S21: 0.1626 S22: -0.0428 S23: 0.1679 REMARK 3 S31: -0.2858 S32: -0.0583 S33: -0.0763 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3873 0.2379 -8.9844 REMARK 3 T TENSOR REMARK 3 T11: 0.3176 T22: 0.3524 REMARK 3 T33: 0.2747 T12: -0.0081 REMARK 3 T13: 0.0127 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 5.3038 L22: 5.2689 REMARK 3 L33: 5.2236 L12: 5.0593 REMARK 3 L13: -1.3221 L23: 0.2930 REMARK 3 S TENSOR REMARK 3 S11: -0.4505 S12: 0.3701 S13: -0.2743 REMARK 3 S21: -0.8512 S22: 0.0728 S23: -0.3208 REMARK 3 S31: 0.3792 S32: 0.1769 S33: 0.3837 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5049 -3.0330 2.7622 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1467 REMARK 3 T33: 0.1349 T12: -0.0062 REMARK 3 T13: 0.0225 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 6.3079 L22: 6.2846 REMARK 3 L33: 6.4423 L12: -1.0978 REMARK 3 L13: 1.1955 L23: 2.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.0731 S13: 0.1222 REMARK 3 S21: -0.1560 S22: 0.1836 S23: -0.5358 REMARK 3 S31: -0.1282 S32: 0.5387 S33: -0.2148 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6527 -3.1437 10.6945 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.1770 REMARK 3 T33: 0.1516 T12: -0.0080 REMARK 3 T13: 0.0101 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.4880 L22: 2.2248 REMARK 3 L33: 2.8702 L12: -0.6221 REMARK 3 L13: -0.0689 L23: 0.1580 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.2853 S13: 0.0441 REMARK 3 S21: 0.1000 S22: 0.1322 S23: -0.0078 REMARK 3 S31: -0.0466 S32: 0.0860 S33: -0.0620 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8474 7.6228 -8.9283 REMARK 3 T TENSOR REMARK 3 T11: 0.2404 T22: 0.2140 REMARK 3 T33: 0.3214 T12: 0.0237 REMARK 3 T13: -0.0149 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.1643 L22: 3.3199 REMARK 3 L33: 2.5079 L12: -2.1665 REMARK 3 L13: 1.3409 L23: -2.4688 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: 0.0506 S13: 0.2692 REMARK 3 S21: -0.3242 S22: -0.0045 S23: -0.0169 REMARK 3 S31: 0.0804 S32: 0.0240 S33: -0.0849 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -25.0172 -10.4407 -7.8696 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.2033 REMARK 3 T33: 0.2177 T12: -0.0037 REMARK 3 T13: -0.0296 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 5.3717 L22: 7.1969 REMARK 3 L33: 7.6193 L12: 0.6186 REMARK 3 L13: 0.8683 L23: -4.9711 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: 0.4009 S13: -0.2581 REMARK 3 S21: -0.8492 S22: -0.0556 S23: 0.0554 REMARK 3 S31: 1.1078 S32: 0.1089 S33: -0.0069 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): -31.7451 -4.8040 11.5657 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.2490 REMARK 3 T33: 0.2202 T12: -0.0239 REMARK 3 T13: 0.0449 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.2924 L22: 3.7796 REMARK 3 L33: 2.6036 L12: -1.0542 REMARK 3 L13: 0.9103 L23: -1.7884 REMARK 3 S TENSOR REMARK 3 S11: -0.1063 S12: -0.1642 S13: -0.0933 REMARK 3 S21: 0.2884 S22: 0.2376 S23: 0.4132 REMARK 3 S31: -0.0830 S32: -0.4539 S33: -0.1315 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6953 22.7392 -28.8516 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.1634 REMARK 3 T33: 0.1442 T12: 0.0372 REMARK 3 T13: -0.0396 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 8.1437 L22: 4.9648 REMARK 3 L33: 3.3286 L12: -1.1048 REMARK 3 L13: -2.4130 L23: 0.3743 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: 0.1573 S13: 0.3909 REMARK 3 S21: -0.3396 S22: -0.1084 S23: 0.1306 REMARK 3 S31: -0.4227 S32: -0.2115 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 55 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1663 22.7269 -12.2377 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1901 REMARK 3 T33: 0.2149 T12: -0.0259 REMARK 3 T13: 0.0009 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 3.2799 L22: 5.1706 REMARK 3 L33: 2.8049 L12: 1.8978 REMARK 3 L13: 1.5713 L23: 2.2168 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: 0.0234 S13: -0.6397 REMARK 3 S21: 0.2750 S22: 0.1643 S23: -0.5194 REMARK 3 S31: 0.0994 S32: 0.2650 S33: -0.2427 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 56 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0866 15.7894 -11.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.2132 REMARK 3 T33: 0.1482 T12: -0.0502 REMARK 3 T13: 0.0148 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 6.3164 L22: 6.9525 REMARK 3 L33: 3.6705 L12: 0.0587 REMARK 3 L13: 1.7439 L23: -1.0120 REMARK 3 S TENSOR REMARK 3 S11: 0.1366 S12: -0.5555 S13: -0.1004 REMARK 3 S21: 0.3807 S22: -0.0592 S23: -0.3945 REMARK 3 S31: -0.0151 S32: -0.0073 S33: -0.1381 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7861 16.8808 -17.3174 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.2046 REMARK 3 T33: 0.1593 T12: 0.0025 REMARK 3 T13: 0.0128 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 3.1102 L22: 4.4933 REMARK 3 L33: 2.2627 L12: -0.9746 REMARK 3 L13: -0.1256 L23: -0.2265 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.2966 S13: 0.1154 REMARK 3 S21: 0.0674 S22: -0.1163 S23: 0.2971 REMARK 3 S31: -0.1255 S32: -0.1957 S33: 0.0420 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 99 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3626 13.5532 -28.1548 REMARK 3 T TENSOR REMARK 3 T11: 0.2515 T22: 0.2217 REMARK 3 T33: 0.1988 T12: 0.0157 REMARK 3 T13: -0.0239 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 4.4215 L22: 2.1118 REMARK 3 L33: 1.7559 L12: 0.8752 REMARK 3 L13: -0.7056 L23: -1.3647 REMARK 3 S TENSOR REMARK 3 S11: 0.0820 S12: 0.3665 S13: 0.1681 REMARK 3 S21: -0.2464 S22: 0.0063 S23: 0.2241 REMARK 3 S31: -0.1744 S32: -0.4918 S33: 0.0439 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 134 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4857 23.2083 -30.4724 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.2114 REMARK 3 T33: 0.2135 T12: -0.0361 REMARK 3 T13: 0.0647 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.7142 L22: 4.5665 REMARK 3 L33: 2.2078 L12: 1.6757 REMARK 3 L13: -0.2567 L23: -1.0298 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.0381 S13: -0.2523 REMARK 3 S21: -0.2766 S22: 0.0171 S23: -0.4602 REMARK 3 S31: 0.0204 S32: 0.1399 S33: 0.0490 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 135 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8388 29.7337 -29.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.2432 T22: 0.2258 REMARK 3 T33: 0.2286 T12: -0.0437 REMARK 3 T13: 0.0405 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.7512 L22: 5.3041 REMARK 3 L33: 2.2385 L12: 0.9385 REMARK 3 L13: -0.9151 L23: -2.4191 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.0516 S13: -0.1824 REMARK 3 S21: -0.0889 S22: -0.1726 S23: -0.4635 REMARK 3 S31: -0.0378 S32: 0.1678 S33: 0.1342 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 161 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9276 8.7620 -24.0204 REMARK 3 T TENSOR REMARK 3 T11: 0.2754 T22: 0.3210 REMARK 3 T33: 0.9349 T12: 0.1252 REMARK 3 T13: 0.2095 T23: 0.2147 REMARK 3 L TENSOR REMARK 3 L11: 5.7415 L22: 0.8713 REMARK 3 L33: 0.1671 L12: 2.2242 REMARK 3 L13: -0.7467 L23: -0.3101 REMARK 3 S TENSOR REMARK 3 S11: -0.2607 S12: -0.2140 S13: -1.0120 REMARK 3 S21: -0.8027 S22: -0.6278 S23: -2.5743 REMARK 3 S31: 0.3418 S32: 0.5839 S33: 0.2389 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 175 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2784 5.0974 -25.8509 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.2023 REMARK 3 T33: 0.2231 T12: 0.0031 REMARK 3 T13: 0.0385 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 2.3484 L22: 4.0417 REMARK 3 L33: 4.8890 L12: -0.1115 REMARK 3 L13: 3.2614 L23: -0.7170 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: -0.0684 S13: -0.3480 REMARK 3 S21: -0.2616 S22: -0.1707 S23: 0.2754 REMARK 3 S31: 0.3714 S32: -0.2457 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 188 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7562 17.3117 -36.6795 REMARK 3 T TENSOR REMARK 3 T11: 0.3231 T22: 0.3371 REMARK 3 T33: 0.2012 T12: 0.0260 REMARK 3 T13: -0.0766 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 5.1510 L22: 6.3987 REMARK 3 L33: 3.9552 L12: 3.7783 REMARK 3 L13: -2.6759 L23: -2.2847 REMARK 3 S TENSOR REMARK 3 S11: -0.0845 S12: 0.4578 S13: 0.1760 REMARK 3 S21: -0.6026 S22: 0.0107 S23: 0.3883 REMARK 3 S31: -0.1057 S32: -0.3585 S33: 0.0533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 285900 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 37.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.86800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % (W/V) PEG 3350, 100 MM BIS-TRIS REMARK 280 PROPANE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.68000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 66.48 -161.04 REMARK 500 ASN B 138 61.63 -155.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 124 0.09 SIDE CHAIN REMARK 500 ARG A 167 0.10 SIDE CHAIN REMARK 500 ARG B 167 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 650 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 651 DISTANCE = 5.81 ANGSTROMS DBREF 8CRG A 1 214 UNP P69441 KAD_ECOLI 1 214 DBREF 8CRG B 1 214 UNP P69441 KAD_ECOLI 1 214 SEQRES 1 A 214 MET ARG ILE ILE LEU LEU GLY ALA PRO GLY ALA GLY LYS SEQRES 2 A 214 GLY THR GLN ALA GLN PHE ILE MET GLU LYS TYR GLY ILE SEQRES 3 A 214 PRO GLN ILE SER THR GLY ASP MET LEU ARG ALA ALA VAL SEQRES 4 A 214 LYS SER GLY SER GLU LEU GLY LYS GLN ALA LYS ASP ILE SEQRES 5 A 214 MET ASP ALA GLY LYS LEU VAL THR ASP GLU LEU VAL ILE SEQRES 6 A 214 ALA LEU VAL LYS GLU ARG ILE ALA GLN GLU ASP CYS ARG SEQRES 7 A 214 ASN GLY PHE LEU LEU ASP GLY PHE PRO ARG THR ILE PRO SEQRES 8 A 214 GLN ALA ASP ALA MET LYS GLU ALA GLY ILE ASN VAL ASP SEQRES 9 A 214 TYR VAL LEU GLU PHE ASP VAL PRO ASP GLU LEU ILE VAL SEQRES 10 A 214 ASP ARG ILE VAL GLY ARG ARG VAL HIS ALA PRO SER GLY SEQRES 11 A 214 ARG VAL TYR HIS VAL LYS PHE ASN PRO PRO LYS VAL GLU SEQRES 12 A 214 GLY LYS ASP ASP VAL THR GLY GLU GLU LEU THR THR ARG SEQRES 13 A 214 LYS ASP ASP GLN GLU GLU THR VAL ARG LYS ARG LEU VAL SEQRES 14 A 214 GLU TYR HIS GLN MET THR ALA PRO LEU ILE GLY TYR TYR SEQRES 15 A 214 SER LYS GLU ALA GLU ALA GLY ASN THR LYS TYR ALA LYS SEQRES 16 A 214 VAL ASP GLY THR LYS PRO VAL ALA GLU VAL ARG ALA ASP SEQRES 17 A 214 LEU GLU LYS ILE LEU GLY SEQRES 1 B 214 MET ARG ILE ILE LEU LEU GLY ALA PRO GLY ALA GLY LYS SEQRES 2 B 214 GLY THR GLN ALA GLN PHE ILE MET GLU LYS TYR GLY ILE SEQRES 3 B 214 PRO GLN ILE SER THR GLY ASP MET LEU ARG ALA ALA VAL SEQRES 4 B 214 LYS SER GLY SER GLU LEU GLY LYS GLN ALA LYS ASP ILE SEQRES 5 B 214 MET ASP ALA GLY LYS LEU VAL THR ASP GLU LEU VAL ILE SEQRES 6 B 214 ALA LEU VAL LYS GLU ARG ILE ALA GLN GLU ASP CYS ARG SEQRES 7 B 214 ASN GLY PHE LEU LEU ASP GLY PHE PRO ARG THR ILE PRO SEQRES 8 B 214 GLN ALA ASP ALA MET LYS GLU ALA GLY ILE ASN VAL ASP SEQRES 9 B 214 TYR VAL LEU GLU PHE ASP VAL PRO ASP GLU LEU ILE VAL SEQRES 10 B 214 ASP ARG ILE VAL GLY ARG ARG VAL HIS ALA PRO SER GLY SEQRES 11 B 214 ARG VAL TYR HIS VAL LYS PHE ASN PRO PRO LYS VAL GLU SEQRES 12 B 214 GLY LYS ASP ASP VAL THR GLY GLU GLU LEU THR THR ARG SEQRES 13 B 214 LYS ASP ASP GLN GLU GLU THR VAL ARG LYS ARG LEU VAL SEQRES 14 B 214 GLU TYR HIS GLN MET THR ALA PRO LEU ILE GLY TYR TYR SEQRES 15 B 214 SER LYS GLU ALA GLU ALA GLY ASN THR LYS TYR ALA LYS SEQRES 16 B 214 VAL ASP GLY THR LYS PRO VAL ALA GLU VAL ARG ALA ASP SEQRES 17 B 214 LEU GLU LYS ILE LEU GLY HET ADP A 301 38 HET ADP A 302 38 HET MPO A 303 54 HET ADP B 301 38 HET ADP B 302 39 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MPO 3[N-MORPHOLINO]PROPANE SULFONIC ACID FORMUL 3 ADP 4(C10 H15 N5 O10 P2) FORMUL 5 MPO C7 H15 N O4 S FORMUL 8 HOH *492(H2 O) HELIX 1 AA1 GLY A 12 GLY A 25 1 14 HELIX 2 AA2 THR A 31 GLY A 42 1 12 HELIX 3 AA3 SER A 43 ALA A 55 1 13 HELIX 4 AA4 THR A 60 ALA A 73 1 14 HELIX 5 AA5 GLN A 74 ARG A 78 5 5 HELIX 6 AA6 THR A 89 GLY A 100 1 12 HELIX 7 AA7 PRO A 112 VAL A 121 1 10 HELIX 8 AA8 ARG A 156 ASP A 159 5 4 HELIX 9 AA9 GLN A 160 THR A 175 1 16 HELIX 10 AB1 PRO A 177 ALA A 188 1 12 HELIX 11 AB2 PRO A 201 GLY A 214 1 14 HELIX 12 AB3 GLY B 12 GLY B 25 1 14 HELIX 13 AB4 THR B 31 GLY B 42 1 12 HELIX 14 AB5 SER B 43 ALA B 55 1 13 HELIX 15 AB6 THR B 60 ALA B 73 1 14 HELIX 16 AB7 GLN B 74 ARG B 78 5 5 HELIX 17 AB8 THR B 89 ALA B 99 1 11 HELIX 18 AB9 PRO B 112 GLY B 122 1 11 HELIX 19 AC1 ARG B 156 ASP B 159 5 4 HELIX 20 AC2 GLN B 160 THR B 175 1 16 HELIX 21 AC3 ALA B 176 ALA B 188 1 13 HELIX 22 AC4 PRO B 201 GLY B 214 1 14 SHEET 1 AA1 5 GLN A 28 SER A 30 0 SHEET 2 AA1 5 PHE A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 AA1 5 ARG A 2 LEU A 6 1 N ILE A 3 O LEU A 83 SHEET 4 AA1 5 TYR A 105 ASP A 110 1 O PHE A 109 N LEU A 6 SHEET 5 AA1 5 LYS A 192 ASP A 197 1 O VAL A 196 N GLU A 108 SHEET 1 AA2 2 ARG A 123 VAL A 125 0 SHEET 2 AA2 2 VAL A 132 HIS A 134 -1 O TYR A 133 N ARG A 124 SHEET 1 AA3 5 GLN B 28 SER B 30 0 SHEET 2 AA3 5 PHE B 81 ASP B 84 1 O LEU B 82 N ILE B 29 SHEET 3 AA3 5 ARG B 2 LEU B 6 1 N ILE B 3 O LEU B 83 SHEET 4 AA3 5 TYR B 105 ASP B 110 1 O PHE B 109 N LEU B 6 SHEET 5 AA3 5 LYS B 192 ASP B 197 1 O VAL B 196 N GLU B 108 SHEET 1 AA4 2 ARG B 123 VAL B 125 0 SHEET 2 AA4 2 VAL B 132 HIS B 134 -1 O TYR B 133 N ARG B 124 CISPEP 1 PHE A 86 PRO A 87 0 -9.80 CISPEP 2 PHE B 86 PRO B 87 0 -8.31 CRYST1 56.810 77.360 59.600 90.00 95.48 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017603 0.000000 0.001690 0.00000 SCALE2 0.000000 0.012927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016856 0.00000