HEADER DNA BINDING PROTEIN/DNA 12-MAY-22 8CSH TITLE STRUCTURE OF THE DNA BINDING DOMAIN OF PSK1 PAR PARTITION PROTEIN TITLE 2 BOUND TO CENTROMERE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*TP*GP*TP*TP*AP*GP*GP*TP*AP*CP*CP*TP*AP*AP*C)- COMPND 3 3'); COMPND 4 CHAIN: T; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PAR; COMPND 8 CHAIN: D, A; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(*TP*AP*GP*TP*TP*AP*GP*GP*TP*AP*CP*CP*TP*AP*AP*CP*A)-3'); COMPND 13 CHAIN: Y; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: UNIDENTIFIED PLASMID; SOURCE 7 ORGANISM_TAXID: 45202; SOURCE 8 GENE: PAR; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA SEGREGATION, PSK1, PAR PROTEIN, CENTROMERE DNA, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 3 14-FEB-24 8CSH 1 REMARK REVDAT 2 24-AUG-22 8CSH 1 JRNL REVDAT 1 10-AUG-22 8CSH 0 JRNL AUTH H.Y.CHAN,S.O.JENSEN,R.J.LEBARD,W.A.FIGGETT,E.LAI, JRNL AUTH 2 A.E.SIMPSON,A.J.BRZOSKA,D.S.DAVIES,A.M.CONNOLLY, JRNL AUTH 3 S.J.CORDWELL,B.A.TRAVIS,R.SALINAS,R.A.SKURRAY,N.FIRTH, JRNL AUTH 4 M.A.SCHUMACHER JRNL TITL MOLECULAR ANALYSIS OF PSK1 PAR: A NOVEL PLASMID PARTITIONING JRNL TITL 2 SYSTEM ENCODED BY STAPHYLOCOCCAL MULTIRESISTANCE PLASMIDS. JRNL REF J.MOL.BIOL. V. 434 67770 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 35907571 JRNL DOI 10.1016/J.JMB.2022.167770 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 14410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0640 - 4.8434 0.82 1164 130 0.1871 0.2084 REMARK 3 2 4.8434 - 3.8460 0.94 1296 149 0.1603 0.1909 REMARK 3 3 3.8460 - 3.3604 0.95 1323 152 0.1765 0.2764 REMARK 3 4 3.3604 - 3.0533 0.93 1280 141 0.2032 0.2575 REMARK 3 5 3.0533 - 2.8346 0.97 1353 151 0.2332 0.3009 REMARK 3 6 2.8346 - 2.6675 0.97 1339 147 0.2651 0.2947 REMARK 3 7 2.6675 - 2.5340 0.98 1346 142 0.2520 0.3341 REMARK 3 8 2.5340 - 2.4237 0.98 1350 159 0.2647 0.2784 REMARK 3 9 2.4237 - 2.3304 0.96 1320 149 0.2753 0.3260 REMARK 3 10 2.3304 - 2.2500 0.86 1189 130 0.3217 0.3400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -13.4243 23.4643 -0.3278 REMARK 3 T TENSOR REMARK 3 T11: 0.2182 T22: 0.3161 REMARK 3 T33: 0.2415 T12: -0.0027 REMARK 3 T13: -0.0296 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.9467 L22: 5.2123 REMARK 3 L33: 5.3671 L12: -0.5659 REMARK 3 L13: 0.7519 L23: -2.5036 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: -0.0662 S13: -0.0425 REMARK 3 S21: -0.0382 S22: 0.1722 S23: 0.3342 REMARK 3 S31: 0.0110 S32: -0.6554 S33: -0.1266 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14410 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 51.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56300 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 5000, 0.2 M AMMONIUM SULPHATE, REMARK 280 0.1 M TRIS PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.18850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.53450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.18850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.53450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, D, A, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU D 54 REMARK 465 ARG D 55 REMARK 465 THR D 56 REMARK 465 THR D 57 REMARK 465 GLN D 58 REMARK 465 ASN D 59 REMARK 465 LYS D 60 REMARK 465 GLU D 61 REMARK 465 ASN D 62 REMARK 465 LYS D 63 REMARK 465 LYS D 64 REMARK 465 SER D 65 REMARK 465 GLU D 66 REMARK 465 ILE D 67 REMARK 465 THR D 68 REMARK 465 TYR D 69 REMARK 465 GLU D 70 REMARK 465 ASN D 71 REMARK 465 THR D 72 REMARK 465 GLU D 73 REMARK 465 LYS D 74 REMARK 465 ASN D 75 REMARK 465 ARG D 76 REMARK 465 TYR D 77 REMARK 465 ASN D 78 REMARK 465 ASN D 79 REMARK 465 SER D 80 REMARK 465 ASP D 81 REMARK 465 GLY D 82 REMARK 465 PHE D 83 REMARK 465 GLU D 84 REMARK 465 THR D 85 REMARK 465 LEU D 86 REMARK 465 LYS D 87 REMARK 465 THR D 88 REMARK 465 LYS D 89 REMARK 465 VAL D 90 REMARK 465 ASN D 91 REMARK 465 GLU D 92 REMARK 465 LEU D 93 REMARK 465 GLU D 94 REMARK 465 LYS D 95 REMARK 465 GLN D 96 REMARK 465 VAL D 97 REMARK 465 GLU D 98 REMARK 465 ILE D 99 REMARK 465 PHE D 100 REMARK 465 GLU D 101 REMARK 465 THR D 102 REMARK 465 ARG D 103 REMARK 465 ALA D 104 REMARK 465 LYS D 105 REMARK 465 ASN D 106 REMARK 465 ASP D 107 REMARK 465 GLU D 108 REMARK 465 LYS D 109 REMARK 465 TYR D 110 REMARK 465 ILE D 111 REMARK 465 GLU D 112 REMARK 465 ASN D 113 REMARK 465 LEU D 114 REMARK 465 THR D 115 REMARK 465 LYS D 116 REMARK 465 GLN D 117 REMARK 465 LEU D 118 REMARK 465 ASP D 119 REMARK 465 GLN D 120 REMARK 465 GLN D 121 REMARK 465 ASN D 122 REMARK 465 SER D 123 REMARK 465 ASN D 124 REMARK 465 VAL D 125 REMARK 465 ASN D 126 REMARK 465 THR D 127 REMARK 465 LEU D 128 REMARK 465 ASN D 129 REMARK 465 LYS D 130 REMARK 465 LEU D 131 REMARK 465 LEU D 132 REMARK 465 GLU D 133 REMARK 465 ASN D 134 REMARK 465 GLN D 135 REMARK 465 GLN D 136 REMARK 465 ILE D 137 REMARK 465 LEU D 138 REMARK 465 ALA D 139 REMARK 465 LEU D 140 REMARK 465 GLU D 141 REMARK 465 SER D 142 REMARK 465 ASN D 143 REMARK 465 LYS D 144 REMARK 465 LYS D 145 REMARK 465 ILE D 146 REMARK 465 GLN D 147 REMARK 465 LYS D 148 REMARK 465 LEU D 149 REMARK 465 GLU D 150 REMARK 465 HIS D 151 REMARK 465 GLN D 152 REMARK 465 LEU D 153 REMARK 465 GLU D 154 REMARK 465 GLU D 155 REMARK 465 GLU D 156 REMARK 465 ARG D 157 REMARK 465 GLN D 158 REMARK 465 LEU D 159 REMARK 465 SER D 160 REMARK 465 TYR D 161 REMARK 465 SER D 162 REMARK 465 PHE D 163 REMARK 465 ASP D 164 REMARK 465 LYS D 165 REMARK 465 SER D 166 REMARK 465 THR D 167 REMARK 465 ASN D 168 REMARK 465 ASP D 169 REMARK 465 ARG D 170 REMARK 465 GLU A 54 REMARK 465 ARG A 55 REMARK 465 THR A 56 REMARK 465 THR A 57 REMARK 465 GLN A 58 REMARK 465 ASN A 59 REMARK 465 LYS A 60 REMARK 465 GLU A 61 REMARK 465 ASN A 62 REMARK 465 LYS A 63 REMARK 465 LYS A 64 REMARK 465 SER A 65 REMARK 465 GLU A 66 REMARK 465 ILE A 67 REMARK 465 THR A 68 REMARK 465 TYR A 69 REMARK 465 GLU A 70 REMARK 465 ASN A 71 REMARK 465 THR A 72 REMARK 465 GLU A 73 REMARK 465 LYS A 74 REMARK 465 ASN A 75 REMARK 465 ARG A 76 REMARK 465 TYR A 77 REMARK 465 ASN A 78 REMARK 465 ASN A 79 REMARK 465 SER A 80 REMARK 465 ASP A 81 REMARK 465 GLY A 82 REMARK 465 PHE A 83 REMARK 465 GLU A 84 REMARK 465 THR A 85 REMARK 465 LEU A 86 REMARK 465 LYS A 87 REMARK 465 THR A 88 REMARK 465 LYS A 89 REMARK 465 VAL A 90 REMARK 465 ASN A 91 REMARK 465 GLU A 92 REMARK 465 LEU A 93 REMARK 465 GLU A 94 REMARK 465 LYS A 95 REMARK 465 GLN A 96 REMARK 465 VAL A 97 REMARK 465 GLU A 98 REMARK 465 ILE A 99 REMARK 465 PHE A 100 REMARK 465 GLU A 101 REMARK 465 THR A 102 REMARK 465 ARG A 103 REMARK 465 ALA A 104 REMARK 465 LYS A 105 REMARK 465 ASN A 106 REMARK 465 ASP A 107 REMARK 465 GLU A 108 REMARK 465 LYS A 109 REMARK 465 TYR A 110 REMARK 465 ILE A 111 REMARK 465 GLU A 112 REMARK 465 ASN A 113 REMARK 465 LEU A 114 REMARK 465 THR A 115 REMARK 465 LYS A 116 REMARK 465 GLN A 117 REMARK 465 LEU A 118 REMARK 465 ASP A 119 REMARK 465 GLN A 120 REMARK 465 GLN A 121 REMARK 465 ASN A 122 REMARK 465 SER A 123 REMARK 465 ASN A 124 REMARK 465 VAL A 125 REMARK 465 ASN A 126 REMARK 465 THR A 127 REMARK 465 LEU A 128 REMARK 465 ASN A 129 REMARK 465 LYS A 130 REMARK 465 LEU A 131 REMARK 465 LEU A 132 REMARK 465 GLU A 133 REMARK 465 ASN A 134 REMARK 465 GLN A 135 REMARK 465 GLN A 136 REMARK 465 ILE A 137 REMARK 465 LEU A 138 REMARK 465 ALA A 139 REMARK 465 LEU A 140 REMARK 465 GLU A 141 REMARK 465 SER A 142 REMARK 465 ASN A 143 REMARK 465 LYS A 144 REMARK 465 LYS A 145 REMARK 465 ILE A 146 REMARK 465 GLN A 147 REMARK 465 LYS A 148 REMARK 465 LEU A 149 REMARK 465 GLU A 150 REMARK 465 HIS A 151 REMARK 465 GLN A 152 REMARK 465 LEU A 153 REMARK 465 GLU A 154 REMARK 465 GLU A 155 REMARK 465 GLU A 156 REMARK 465 ARG A 157 REMARK 465 GLN A 158 REMARK 465 LEU A 159 REMARK 465 SER A 160 REMARK 465 TYR A 161 REMARK 465 SER A 162 REMARK 465 PHE A 163 REMARK 465 ASP A 164 REMARK 465 LYS A 165 REMARK 465 SER A 166 REMARK 465 THR A 167 REMARK 465 ASN A 168 REMARK 465 ASP A 169 REMARK 465 ARG A 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA Y 23 OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 10 OH TYR A 43 2.10 REMARK 500 O HOH Y 120 O HOH Y 122 2.13 REMARK 500 NZ LYS D 23 O HOH D 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS D 2 OE2 GLU A 10 4445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 9 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT T 10 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC Y 17 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN D 33 -10.69 73.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CSH T 8 22 PDB 8CSH 8CSH 8 22 DBREF 8CSH D 1 170 UNP Q9L8I7 Q9L8I7_STAAU 1 170 DBREF 8CSH A 1 170 UNP Q9L8I7 Q9L8I7_STAAU 1 170 DBREF 8CSH Y 7 23 PDB 8CSH 8CSH 7 23 SEQRES 1 T 15 DT DG DT DT DA DG DG DT DA DC DC DT DA SEQRES 2 T 15 DA DC SEQRES 1 D 170 MET LYS THR ILE LYS MET VAL ALA ASP GLU LEU ASN VAL SEQRES 2 D 170 THR LYS GLN THR VAL VAL ASN ASN ALA LYS ASN LEU ASN SEQRES 3 D 170 ILE SER PHE GLU LYS GLU ASN GLY VAL ASN TYR ILE ASP SEQRES 4 D 170 ASP ASN ASP TYR LEU LYS ILE VAL GLU LYS ILE THR LYS SEQRES 5 D 170 LYS GLU ARG THR THR GLN ASN LYS GLU ASN LYS LYS SER SEQRES 6 D 170 GLU ILE THR TYR GLU ASN THR GLU LYS ASN ARG TYR ASN SEQRES 7 D 170 ASN SER ASP GLY PHE GLU THR LEU LYS THR LYS VAL ASN SEQRES 8 D 170 GLU LEU GLU LYS GLN VAL GLU ILE PHE GLU THR ARG ALA SEQRES 9 D 170 LYS ASN ASP GLU LYS TYR ILE GLU ASN LEU THR LYS GLN SEQRES 10 D 170 LEU ASP GLN GLN ASN SER ASN VAL ASN THR LEU ASN LYS SEQRES 11 D 170 LEU LEU GLU ASN GLN GLN ILE LEU ALA LEU GLU SER ASN SEQRES 12 D 170 LYS LYS ILE GLN LYS LEU GLU HIS GLN LEU GLU GLU GLU SEQRES 13 D 170 ARG GLN LEU SER TYR SER PHE ASP LYS SER THR ASN ASP SEQRES 14 D 170 ARG SEQRES 1 A 170 MET LYS THR ILE LYS MET VAL ALA ASP GLU LEU ASN VAL SEQRES 2 A 170 THR LYS GLN THR VAL VAL ASN ASN ALA LYS ASN LEU ASN SEQRES 3 A 170 ILE SER PHE GLU LYS GLU ASN GLY VAL ASN TYR ILE ASP SEQRES 4 A 170 ASP ASN ASP TYR LEU LYS ILE VAL GLU LYS ILE THR LYS SEQRES 5 A 170 LYS GLU ARG THR THR GLN ASN LYS GLU ASN LYS LYS SER SEQRES 6 A 170 GLU ILE THR TYR GLU ASN THR GLU LYS ASN ARG TYR ASN SEQRES 7 A 170 ASN SER ASP GLY PHE GLU THR LEU LYS THR LYS VAL ASN SEQRES 8 A 170 GLU LEU GLU LYS GLN VAL GLU ILE PHE GLU THR ARG ALA SEQRES 9 A 170 LYS ASN ASP GLU LYS TYR ILE GLU ASN LEU THR LYS GLN SEQRES 10 A 170 LEU ASP GLN GLN ASN SER ASN VAL ASN THR LEU ASN LYS SEQRES 11 A 170 LEU LEU GLU ASN GLN GLN ILE LEU ALA LEU GLU SER ASN SEQRES 12 A 170 LYS LYS ILE GLN LYS LEU GLU HIS GLN LEU GLU GLU GLU SEQRES 13 A 170 ARG GLN LEU SER TYR SER PHE ASP LYS SER THR ASN ASP SEQRES 14 A 170 ARG SEQRES 1 Y 17 DT DA DG DT DT DA DG DG DT DA DC DC DT SEQRES 2 Y 17 DA DA DC DA FORMUL 5 HOH *59(H2 O) HELIX 1 AA1 ILE D 4 ASN D 12 1 9 HELIX 2 AA2 THR D 14 LEU D 25 1 12 HELIX 3 AA3 ASP D 39 LYS D 53 1 15 HELIX 4 AA4 ILE A 4 ASN A 12 1 9 HELIX 5 AA5 THR A 14 LEU A 25 1 12 HELIX 6 AA6 ASP A 39 LYS A 53 1 15 SHEET 1 AA1 3 LYS D 2 THR D 3 0 SHEET 2 AA1 3 VAL D 35 ILE D 38 -1 O ILE D 38 N LYS D 2 SHEET 3 AA1 3 GLU D 30 GLU D 32 -1 N GLU D 32 O VAL D 35 SHEET 1 AA2 3 LYS A 2 THR A 3 0 SHEET 2 AA2 3 VAL A 35 ILE A 38 -1 O ILE A 38 N LYS A 2 SHEET 3 AA2 3 GLU A 30 GLU A 32 -1 N GLU A 30 O TYR A 37 CRYST1 70.377 91.069 59.184 90.00 119.85 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014209 0.000000 0.008153 0.00000 SCALE2 0.000000 0.010981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019481 0.00000