HEADER TRANSCRIPTION 18-MAY-22 8CV4 TITLE PEPTIDE 4.2C IN COMPLEX WITH BRD4.2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRD4 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BD2 (UNP RESIDUES 347-464); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE 4.2F; COMPND 8 CHAIN: C, D, E; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS CYCLIC PEPTIDE INHIBITOR BROMODOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.FRANCK,J.P.MACKAY REVDAT 4 06-DEC-23 8CV4 1 JRNL REVDAT 3 15-NOV-23 8CV4 1 REMARK REVDAT 2 25-OCT-23 8CV4 1 REMARK REVDAT 1 24-MAY-23 8CV4 0 JRNL AUTH C.FRANCK,K.PATEL,L.J.WALPORT,M.CHRISTIE,A.NORMAN, JRNL AUTH 2 T.PASSIOURA,H.SUGA,R.J.PAYNE,J.P.MACKAY JRNL TITL DISCOVERY AND CHARACTERIZATION OF CYCLIC PEPTIDES SELECTIVE JRNL TITL 2 FOR THE C-TERMINAL BROMODOMAINS OF BET FAMILY PROTEINS. JRNL REF STRUCTURE V. 31 912 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 37269828 JRNL DOI 10.1016/J.STR.2023.05.009 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5600 - 3.8600 1.00 2617 146 0.1749 0.1949 REMARK 3 2 3.8600 - 3.0600 1.00 2519 134 0.2025 0.2712 REMARK 3 3 3.0600 - 2.6700 1.00 2470 144 0.2358 0.2582 REMARK 3 4 2.6700 - 2.4300 1.00 2469 127 0.2233 0.2752 REMARK 3 5 2.4300 - 2.2600 1.00 2492 109 0.2201 0.2713 REMARK 3 6 2.2600 - 2.1200 1.00 2408 148 0.2262 0.2936 REMARK 3 7 2.1200 - 2.0200 1.00 2485 113 0.2334 0.2968 REMARK 3 8 2.0200 - 1.9300 0.97 2365 135 0.2618 0.3572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.245 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.628 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2331 REMARK 3 ANGLE : 1.003 3130 REMARK 3 CHIRALITY : 0.051 308 REMARK 3 PLANARITY : 0.009 394 REMARK 3 DIHEDRAL : 14.747 329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 348 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7214 7.0324 5.9295 REMARK 3 T TENSOR REMARK 3 T11: 0.2943 T22: 0.1996 REMARK 3 T33: 0.2346 T12: -0.0102 REMARK 3 T13: 0.0486 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.8455 L22: 2.4535 REMARK 3 L33: 5.9461 L12: 1.2926 REMARK 3 L13: 1.0690 L23: 3.6374 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.2141 S13: -0.4100 REMARK 3 S21: -0.0270 S22: 0.0078 S23: -0.1965 REMARK 3 S31: 0.6184 S32: -0.2523 S33: 0.0444 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7281 21.6865 15.1666 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.2071 REMARK 3 T33: 0.1912 T12: -0.0044 REMARK 3 T13: -0.0113 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.9514 L22: 1.2669 REMARK 3 L33: 3.8639 L12: 0.3911 REMARK 3 L13: -0.0307 L23: -0.6203 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.2084 S13: 0.1373 REMARK 3 S21: 0.0097 S22: -0.0395 S23: -0.2250 REMARK 3 S31: -0.1471 S32: 0.2117 S33: 0.1621 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8152 14.3650 23.1754 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.2831 REMARK 3 T33: 0.2758 T12: 0.0549 REMARK 3 T13: 0.0147 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.6028 L22: 2.2038 REMARK 3 L33: 3.4653 L12: -1.8644 REMARK 3 L13: 1.9116 L23: -2.2235 REMARK 3 S TENSOR REMARK 3 S11: 0.3378 S12: -0.1129 S13: 0.0368 REMARK 3 S21: -0.1725 S22: -0.3517 S23: -0.2246 REMARK 3 S31: -0.0329 S32: 0.8755 S33: 0.1773 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7285 9.3959 26.8938 REMARK 3 T TENSOR REMARK 3 T11: 0.2077 T22: 0.2476 REMARK 3 T33: 0.2679 T12: 0.0560 REMARK 3 T13: -0.0112 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 1.1640 L22: 1.4370 REMARK 3 L33: 4.3151 L12: 0.4557 REMARK 3 L13: -0.2325 L23: 0.8185 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.1555 S13: -0.1847 REMARK 3 S21: 0.1000 S22: -0.0449 S23: -0.1421 REMARK 3 S31: 0.3999 S32: 0.2990 S33: -0.0151 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 414 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9529 -1.7383 12.9141 REMARK 3 T TENSOR REMARK 3 T11: 0.4631 T22: 0.1971 REMARK 3 T33: 0.5724 T12: -0.0097 REMARK 3 T13: 0.0416 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 5.0574 L22: 4.1400 REMARK 3 L33: 4.3536 L12: -1.7870 REMARK 3 L13: 3.3139 L23: 1.5700 REMARK 3 S TENSOR REMARK 3 S11: 0.2076 S12: -0.3960 S13: -1.2870 REMARK 3 S21: -0.0774 S22: 0.0770 S23: -1.0186 REMARK 3 S31: 0.7426 S32: 0.0462 S33: -0.2395 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 415 THROUGH 432 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3137 10.4805 22.0395 REMARK 3 T TENSOR REMARK 3 T11: 0.2167 T22: 0.2516 REMARK 3 T33: 0.2008 T12: -0.0036 REMARK 3 T13: 0.0320 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.6302 L22: 3.5443 REMARK 3 L33: 3.6853 L12: -0.0318 REMARK 3 L13: 0.8597 L23: 2.8396 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: -0.0605 S13: -0.1742 REMARK 3 S21: -0.1539 S22: -0.1329 S23: -0.1380 REMARK 3 S31: 0.0465 S32: -0.2912 S33: 0.0957 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 433 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2701 23.7251 31.7453 REMARK 3 T TENSOR REMARK 3 T11: 0.3251 T22: 0.2615 REMARK 3 T33: 0.2424 T12: 0.0376 REMARK 3 T13: -0.0014 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 2.0951 L22: 2.5886 REMARK 3 L33: 4.6341 L12: -1.1821 REMARK 3 L13: 1.2981 L23: -3.4450 REMARK 3 S TENSOR REMARK 3 S11: -0.3762 S12: -0.4867 S13: 0.4838 REMARK 3 S21: 1.1694 S22: 0.2529 S23: -0.3400 REMARK 3 S31: -0.5102 S32: -0.2833 S33: 0.1538 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 438 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9159 19.4384 16.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.1344 REMARK 3 T33: 0.2151 T12: 0.0110 REMARK 3 T13: 0.0273 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.2254 L22: 2.3455 REMARK 3 L33: 5.5761 L12: 1.2491 REMARK 3 L13: 2.5784 L23: 1.5721 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: -0.1223 S13: 0.1597 REMARK 3 S21: 0.0985 S22: -0.0703 S23: 0.2801 REMARK 3 S31: 0.0098 S32: -0.3176 S33: 0.0556 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 463 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1510 5.7606 0.5520 REMARK 3 T TENSOR REMARK 3 T11: 0.5405 T22: 0.6408 REMARK 3 T33: 0.7038 T12: -0.2393 REMARK 3 T13: -0.0296 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 3.9339 L22: 6.0940 REMARK 3 L33: 5.3921 L12: 1.9644 REMARK 3 L13: 1.8791 L23: -2.2789 REMARK 3 S TENSOR REMARK 3 S11: -0.1745 S12: 0.7639 S13: -1.9820 REMARK 3 S21: 0.2479 S22: 0.3808 S23: -0.2687 REMARK 3 S31: 1.1840 S32: -0.7197 S33: -0.1977 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 349 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2033 13.6067 26.0446 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.2046 REMARK 3 T33: 0.1584 T12: -0.0462 REMARK 3 T13: 0.0114 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.4220 L22: 2.1915 REMARK 3 L33: 3.7093 L12: -0.6341 REMARK 3 L13: 1.0975 L23: -0.6034 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: -0.2720 S13: -0.0155 REMARK 3 S21: 0.2224 S22: -0.0785 S23: -0.0026 REMARK 3 S31: 0.0352 S32: -0.2773 S33: 0.0826 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 382 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9617 11.8760 15.9451 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1386 REMARK 3 T33: 0.1591 T12: 0.0220 REMARK 3 T13: -0.0064 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.1314 L22: 1.4503 REMARK 3 L33: 3.6592 L12: 0.2506 REMARK 3 L13: 0.5647 L23: -0.3154 REMARK 3 S TENSOR REMARK 3 S11: 0.0808 S12: 0.0832 S13: -0.0626 REMARK 3 S21: -0.0532 S22: -0.0448 S23: -0.0183 REMARK 3 S31: 0.2227 S32: 0.0716 S33: -0.0372 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 463 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8561 5.6567 37.5026 REMARK 3 T TENSOR REMARK 3 T11: 0.4265 T22: 0.4868 REMARK 3 T33: 0.5708 T12: 0.0990 REMARK 3 T13: -0.0082 T23: 0.1078 REMARK 3 L TENSOR REMARK 3 L11: 9.3634 L22: 3.1768 REMARK 3 L33: 6.0081 L12: 2.7215 REMARK 3 L13: -1.4742 L23: 3.3018 REMARK 3 S TENSOR REMARK 3 S11: -0.7129 S12: -0.6135 S13: -1.8290 REMARK 3 S21: 0.4350 S22: 0.9883 S23: -0.3462 REMARK 3 S31: 0.7065 S32: 0.4933 S33: -0.2116 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4324 24.4109 14.1839 REMARK 3 T TENSOR REMARK 3 T11: 0.2237 T22: 0.2184 REMARK 3 T33: 0.2650 T12: 0.0248 REMARK 3 T13: -0.0082 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 4.1869 L22: 2.4179 REMARK 3 L33: 6.3273 L12: -0.7703 REMARK 3 L13: -2.4844 L23: 0.5526 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: 0.0570 S13: 0.4303 REMARK 3 S21: -0.0512 S22: 0.2044 S23: -0.0554 REMARK 3 S31: -0.1952 S32: -0.2313 S33: -0.2376 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 0 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2819 24.6620 24.2513 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.2082 REMARK 3 T33: 0.2078 T12: -0.0127 REMARK 3 T13: -0.0197 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.7658 L22: 3.5341 REMARK 3 L33: 6.0815 L12: 0.3599 REMARK 3 L13: -1.2885 L23: -0.5923 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.0517 S13: 0.1670 REMARK 3 S21: 0.3417 S22: 0.0729 S23: -0.3880 REMARK 3 S31: -0.1858 S32: 0.3263 S33: -0.0821 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 0 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2889 35.9024 20.2774 REMARK 3 T TENSOR REMARK 3 T11: 0.4528 T22: 0.3665 REMARK 3 T33: 0.5920 T12: -0.0006 REMARK 3 T13: 0.0682 T23: 0.1597 REMARK 3 L TENSOR REMARK 3 L11: 1.2323 L22: 4.4386 REMARK 3 L33: 6.8164 L12: -0.5058 REMARK 3 L13: -0.0744 L23: -1.6108 REMARK 3 S TENSOR REMARK 3 S11: 0.4397 S12: 0.5859 S13: 1.3466 REMARK 3 S21: -0.4966 S22: -0.4017 S23: -0.6130 REMARK 3 S31: -1.1242 S32: 0.4652 S33: -0.1994 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000264262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953736 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20968 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 43.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5UVV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCTPA, PH 4.0, 25% W/V PEG1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.78750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.19750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.92750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.19750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.78750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.92750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 343 REMARK 465 PRO A 344 REMARK 465 LEU A 345 REMARK 465 GLY A 346 REMARK 465 SER A 347 REMARK 465 PRO A 464 REMARK 465 GLY B 343 REMARK 465 PRO B 344 REMARK 465 LEU B 345 REMARK 465 GLY B 346 REMARK 465 SER B 347 REMARK 465 SER B 348 REMARK 465 PRO B 464 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 349 N REMARK 480 LYS A 355 CG CD CE NZ REMARK 480 LYS A 367 CD CE NZ REMARK 480 LYS A 378 CD CE NZ REMARK 480 GLU A 383 CG CD OE1 OE2 REMARK 480 LYS A 404 CE NZ REMARK 480 ARG A 410 CD NE CZ NH1 NH2 REMARK 480 ASP A 436 OD1 OD2 REMARK 480 LYS A 445 CE NZ REMARK 480 LYS A 456 NZ REMARK 480 LYS B 367 CG CD CE NZ REMARK 480 GLU B 383 CD OE1 OE2 REMARK 480 ARG B 413 CG CD NE CZ NH1 NH2 REMARK 480 ASP B 436 CG OD1 OD2 REMARK 480 LYS B 445 NZ REMARK 480 ALY C 6 OH CH CH3 NZ CE CD REMARK 480 ALY E 2 OH CH CH3 REMARK 480 ARG E 5 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS E 10 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 5 -128.03 44.58 REMARK 500 ARG D 5 -123.25 44.01 REMARK 500 ARG E 5 68.77 39.97 REMARK 500 ALY E 6 -37.90 83.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CV4 A 347 464 UNP Q5BJ26 Q5BJ26_HUMAN 347 464 DBREF 8CV4 B 347 464 UNP Q5BJ26 Q5BJ26_HUMAN 347 464 DBREF 8CV4 C 1 12 PDB 8CV4 8CV4 1 12 DBREF 8CV4 D 1 12 PDB 8CV4 8CV4 1 12 DBREF 8CV4 E 1 12 PDB 8CV4 8CV4 1 12 SEQADV 8CV4 GLY A 343 UNP Q5BJ26 EXPRESSION TAG SEQADV 8CV4 PRO A 344 UNP Q5BJ26 EXPRESSION TAG SEQADV 8CV4 LEU A 345 UNP Q5BJ26 EXPRESSION TAG SEQADV 8CV4 GLY A 346 UNP Q5BJ26 EXPRESSION TAG SEQADV 8CV4 GLY B 343 UNP Q5BJ26 EXPRESSION TAG SEQADV 8CV4 PRO B 344 UNP Q5BJ26 EXPRESSION TAG SEQADV 8CV4 LEU B 345 UNP Q5BJ26 EXPRESSION TAG SEQADV 8CV4 GLY B 346 UNP Q5BJ26 EXPRESSION TAG SEQRES 1 A 122 GLY PRO LEU GLY SER SER LYS VAL SER GLU GLN LEU LYS SEQRES 2 A 122 CYS CYS SER GLY ILE LEU LYS GLU MET PHE ALA LYS LYS SEQRES 3 A 122 HIS ALA ALA TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP SEQRES 4 A 122 VAL GLU ALA LEU GLY LEU HIS ASP TYR CYS ASP ILE ILE SEQRES 5 A 122 LYS HIS PRO MET ASP MET SER THR ILE LYS SER LYS LEU SEQRES 6 A 122 GLU ALA ARG GLU TYR ARG ASP ALA GLN GLU PHE GLY ALA SEQRES 7 A 122 ASP VAL ARG LEU MET PHE SER ASN CYS TYR LYS TYR ASN SEQRES 8 A 122 PRO PRO ASP HIS GLU VAL VAL ALA MET ALA ARG LYS LEU SEQRES 9 A 122 GLN ASP VAL PHE GLU MET ARG PHE ALA LYS MET PRO ASP SEQRES 10 A 122 GLU PRO GLU GLU PRO SEQRES 1 B 122 GLY PRO LEU GLY SER SER LYS VAL SER GLU GLN LEU LYS SEQRES 2 B 122 CYS CYS SER GLY ILE LEU LYS GLU MET PHE ALA LYS LYS SEQRES 3 B 122 HIS ALA ALA TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP SEQRES 4 B 122 VAL GLU ALA LEU GLY LEU HIS ASP TYR CYS ASP ILE ILE SEQRES 5 B 122 LYS HIS PRO MET ASP MET SER THR ILE LYS SER LYS LEU SEQRES 6 B 122 GLU ALA ARG GLU TYR ARG ASP ALA GLN GLU PHE GLY ALA SEQRES 7 B 122 ASP VAL ARG LEU MET PHE SER ASN CYS TYR LYS TYR ASN SEQRES 8 B 122 PRO PRO ASP HIS GLU VAL VAL ALA MET ALA ARG LYS LEU SEQRES 9 B 122 GLN ASP VAL PHE GLU MET ARG PHE ALA LYS MET PRO ASP SEQRES 10 B 122 GLU PRO GLU GLU PRO SEQRES 1 C 12 TRP ALY TYR TRP ARG ALY TYR VAL LEU LYS ILE CYS SEQRES 1 D 12 TRP ALY TYR TRP ARG ALY TYR VAL LEU LYS ILE CYS SEQRES 1 E 12 TRP ALY TYR TRP ARG ALY TYR VAL LEU LYS ILE CYS HET ALY C 2 12 HET ALY C 6 12 HET ALY D 2 12 HET ALY D 6 12 HET ALY E 2 12 HET ALY E 6 12 HET ACE C 101 3 HET NH2 C 102 1 HET ACE D 101 3 HET NH2 D 102 1 HET ACE E 101 3 HET NH2 E 102 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 3 ALY 6(C8 H16 N2 O3) FORMUL 6 ACE 3(C2 H4 O) FORMUL 7 NH2 3(H2 N) FORMUL 12 HOH *118(H2 O) HELIX 1 AA1 SER A 348 PHE A 365 1 18 HELIX 2 AA2 ALA A 366 LYS A 368 5 3 HELIX 3 AA3 HIS A 369 TRP A 374 1 6 HELIX 4 AA4 PRO A 375 TYR A 377 5 3 HELIX 5 AA5 ASP A 381 GLY A 386 1 6 HELIX 6 AA6 ASP A 389 ILE A 394 1 6 HELIX 7 AA7 ASP A 399 ALA A 409 1 11 HELIX 8 AA8 ASP A 414 ASN A 433 1 20 HELIX 9 AA9 HIS A 437 LYS A 456 1 20 HELIX 10 AB1 VAL B 350 PHE B 365 1 16 HELIX 11 AB2 ALA B 366 LYS B 368 5 3 HELIX 12 AB3 HIS B 369 TRP B 374 1 6 HELIX 13 AB4 PRO B 375 TYR B 377 5 3 HELIX 14 AB5 ASP B 381 GLY B 386 1 6 HELIX 15 AB6 ASP B 389 ILE B 394 1 6 HELIX 16 AB7 ASP B 399 ALA B 409 1 11 HELIX 17 AB8 ASP B 414 ASN B 433 1 20 HELIX 18 AB9 HIS B 437 LYS B 456 1 20 SHEET 1 AA1 2 ALY C 2 TRP C 4 0 SHEET 2 AA1 2 TYR C 7 LEU C 9 -1 O LEU C 9 N ALY C 2 SHEET 1 AA2 2 ALY D 2 TRP D 4 0 SHEET 2 AA2 2 TYR D 7 LEU D 9 -1 O LEU D 9 N ALY D 2 SHEET 1 AA3 2 ALY E 2 TRP E 4 0 SHEET 2 AA3 2 TYR E 7 LEU E 9 -1 O LEU E 9 N ALY E 2 LINK C TRP C 1 N ALY C 2 1555 1555 1.33 LINK N TRP C 1 C ACE C 101 1555 1555 1.33 LINK C ALY C 2 N TYR C 3 1555 1555 1.33 LINK C ARG C 5 N ALY C 6 1555 1555 1.33 LINK C ALY C 6 N TYR C 7 1555 1555 1.32 LINK SG CYS C 12 CH3 ACE C 101 1555 1555 1.77 LINK C CYS C 12 N NH2 C 102 1555 1555 1.43 LINK C TRP D 1 N ALY D 2 1555 1555 1.33 LINK N TRP D 1 C ACE D 101 1555 1555 1.34 LINK C ALY D 2 N TYR D 3 1555 1555 1.34 LINK C ARG D 5 N ALY D 6 1555 1555 1.32 LINK C ALY D 6 N TYR D 7 1555 1555 1.33 LINK SG CYS D 12 CH3 ACE D 101 1555 1555 1.77 LINK C CYS D 12 N NH2 D 102 1555 1555 1.43 LINK C TRP E 1 N ALY E 2 1555 1555 1.33 LINK N TRP E 1 C ACE E 101 1555 1555 1.33 LINK C ALY E 2 N TYR E 3 1555 1555 1.33 LINK C ARG E 5 N ALY E 6 1555 1555 1.34 LINK C ALY E 6 N TYR E 7 1555 1555 1.33 LINK SG CYS E 12 CH3 ACE E 101 1555 1555 1.77 LINK C CYS E 12 N NH2 E 102 1555 1555 1.43 CRYST1 53.575 65.855 76.395 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013090 0.00000