HEADER BIOSYNTHETIC PROTEIN 19-MAY-22 8CWX TITLE NMR STRUCTURE OF A STAPLED LANTHIPEPTIDE NATURAL PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LANTHIPEPTIDE NATURAL PRODUCT MSMOAC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES MOROOKAENSE; SOURCE 3 ORGANISM_TAXID: 1970; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS A-HELIX, BIOSYNTHESIS, STAPLED PEPTIDE, NATURAL PRODUCT, BIOSYNTHETIC KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Z.PEI,L.ZHU,S.K.NAIR REVDAT 1 12-OCT-22 8CWX 0 JRNL AUTH Z.F.PEI,L.ZHU,R.SARKSIAN,W.A.VAN DER DONK,S.K.NAIR JRNL TITL CLASS V LANTHIPEPTIDE CYCLASE DIRECTS THE BIOSYNTHESIS OF A JRNL TITL 2 STAPLED PEPTIDE NATURAL PRODUCT. JRNL REF J.AM.CHEM.SOC. V. 144 17549 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 36107785 JRNL DOI 10.1021/JACS.2C06808 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265373. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM MSMOAC, 70% H2O/30% ACN REMARK 210 -D3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PROCHECK / PROCHECK-NMR, REMARK 210 NMRPIPE, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -34.89 85.02 REMARK 500 1 ALA A 3 -147.84 26.48 REMARK 500 1 ALA A 5 -103.90 31.26 REMARK 500 1 ALA A 8 -30.15 92.75 REMARK 500 1 DAL A 13 -55.06 -78.48 REMARK 500 1 PRO A 16 98.94 -46.89 REMARK 500 1 LEU A 17 -34.28 83.86 REMARK 500 1 DAL A 24 -31.39 -75.85 REMARK 500 2 ALA A 2 29.97 85.14 REMARK 500 2 ALA A 3 -146.81 26.13 REMARK 500 2 ASP A 4 -52.82 67.45 REMARK 500 2 ALA A 5 -158.18 31.75 REMARK 500 2 ALA A 8 -27.12 92.24 REMARK 500 2 DAL A 13 -56.95 -78.28 REMARK 500 2 PRO A 16 95.52 -53.68 REMARK 500 2 LEU A 17 -21.19 82.69 REMARK 500 2 DAL A 24 -30.86 -77.91 REMARK 500 3 ALA A 2 -66.02 84.92 REMARK 500 3 ALA A 3 -105.66 26.35 REMARK 500 3 ASP A 4 -58.36 68.03 REMARK 500 3 ALA A 5 -118.48 30.73 REMARK 500 3 ALA A 8 -29.26 92.79 REMARK 500 3 DAL A 13 -56.44 -77.88 REMARK 500 3 PRO A 16 97.31 -50.74 REMARK 500 3 LEU A 17 -21.80 82.33 REMARK 500 4 ALA A 2 -147.18 85.08 REMARK 500 4 ALA A 3 -111.54 26.26 REMARK 500 4 ALA A 5 172.19 88.36 REMARK 500 4 ALA A 8 -29.05 92.63 REMARK 500 4 DAL A 13 -58.15 -78.29 REMARK 500 4 PRO A 16 97.08 -43.80 REMARK 500 4 LEU A 17 -30.85 81.86 REMARK 500 4 DBB A 20 -34.23 -39.90 REMARK 500 4 CYS A 23 -79.70 -77.35 REMARK 500 4 DAL A 24 -46.38 -36.51 REMARK 500 5 ALA A 2 -22.61 85.03 REMARK 500 5 ALA A 3 44.56 26.48 REMARK 500 5 ALA A 5 -108.95 31.43 REMARK 500 5 ALA A 8 -28.25 92.39 REMARK 500 5 DAL A 13 -57.58 -77.94 REMARK 500 5 PRO A 16 96.46 -54.48 REMARK 500 5 LEU A 17 -21.08 80.04 REMARK 500 5 DAL A 24 -32.93 -73.73 REMARK 500 6 ALA A 2 138.08 85.13 REMARK 500 6 ALA A 3 -103.53 26.24 REMARK 500 6 ALA A 5 -142.17 88.24 REMARK 500 6 TRP A 6 -168.53 -161.76 REMARK 500 6 ALA A 8 -27.80 92.21 REMARK 500 6 DAL A 13 -59.01 -78.22 REMARK 500 6 PRO A 16 97.65 -52.45 REMARK 500 REMARK 500 THIS ENTRY HAS 130 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31024 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF A STAPLED LANTHIPEPTIDE NATURAL PRODUCT DBREF 8CWX A 1 28 PDB 8CWX 8CWX 1 28 SEQRES 1 A 28 PHE ALA ALA ASP ALA TRP ALA ALA GLN ASP MET ALA DAL SEQRES 2 A 28 GLY ASN PRO LEU DBU DBU DBB PHE CYS CYS DAL VAL GLN SEQRES 3 A 28 CYS GLY HET DAL A 13 9 HET DBU A 18 11 HET DBU A 19 11 HET DBB A 20 12 HET DAL A 24 9 HETNAM DAL D-ALANINE HETNAM DBU (2Z)-2-AMINOBUT-2-ENOIC ACID HETNAM DBB D-ALPHA-AMINOBUTYRIC ACID HETSYN DBU Z-DEHYDROBUTYRINE FORMUL 1 DAL 2(C3 H7 N O2) FORMUL 1 DBU 2(C4 H7 N O2) FORMUL 1 DBB C4 H9 N O2 HELIX 1 AA1 LEU A 17 CYS A 27 1 11 LINK C ALA A 12 N DAL A 13 1555 1555 1.32 LINK C DAL A 13 N GLY A 14 1555 1555 1.32 LINK CB DAL A 13 SG CYS A 22 1555 1555 1.81 LINK C LEU A 17 N DBU A 18 1555 1555 1.32 LINK C DBU A 18 N DBU A 19 1555 1555 1.33 LINK C DBU A 19 N DBB A 20 1555 1555 1.32 LINK C DBB A 20 N PHE A 21 1555 1555 1.33 LINK CB DBB A 20 SG CYS A 23 1555 1555 1.81 LINK C CYS A 23 N DAL A 24 1555 1555 1.33 LINK C DAL A 24 N VAL A 25 1555 1555 1.33 LINK CB DAL A 24 SG CYS A 27 1555 1555 1.81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1