HEADER OXIDOREDUCTASE 20-MAY-22 8CXD TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH PHENYLMETHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, MICROFRAG SCREENING, FBDD, KEYWDS 2 FRAGMENT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.L.WHITEHOUSE,O.V.ILYICHOVA,A.J.TAYLOR REVDAT 3 25-OCT-23 8CXD 1 REMARK REVDAT 2 22-FEB-23 8CXD 1 JRNL REVDAT 1 07-DEC-22 8CXD 0 JRNL AUTH R.L.WHITEHOUSE,W.S.ALWAN,O.V.ILYICHOVA,A.J.TAYLOR, JRNL AUTH 2 I.R.CHANDRASHEKARAN,B.MOHANTY,B.C.DOAK,M.J.SCANLON JRNL TITL FRAGMENT SCREENING LIBRARIES FOR THE IDENTIFICATION OF JRNL TITL 2 PROTEIN HOT SPOTS AND THEIR MINIMAL BINDING PHARMACOPHORES. JRNL REF RSC MED CHEM V. 14 135 2023 JRNL REFN ESSN 2632-8682 JRNL PMID 36760747 JRNL DOI 10.1039/D2MD00253A REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.900 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1600 - 3.2700 1.00 6735 133 0.1583 0.1710 REMARK 3 2 3.2700 - 2.6000 1.00 6676 121 0.1846 0.2004 REMARK 3 3 2.6000 - 2.2700 1.00 6605 137 0.1773 0.2268 REMARK 3 4 2.2700 - 2.0600 1.00 6622 133 0.1757 0.2157 REMARK 3 5 2.0600 - 1.9100 1.00 6609 125 0.1894 0.2378 REMARK 3 6 1.9100 - 1.8000 1.00 6609 125 0.2349 0.2699 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.237 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.717 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3046 REMARK 3 ANGLE : 0.778 4135 REMARK 3 CHIRALITY : 0.053 450 REMARK 3 PLANARITY : 0.005 586 REMARK 3 DIHEDRAL : 4.574 457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0941 -2.4408 -11.7450 REMARK 3 T TENSOR REMARK 3 T11: 0.3399 T22: 0.3243 REMARK 3 T33: 0.1802 T12: -0.0219 REMARK 3 T13: 0.0232 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 3.8946 L22: 9.2287 REMARK 3 L33: 2.9843 L12: 2.4814 REMARK 3 L13: -0.2200 L23: 0.6868 REMARK 3 S TENSOR REMARK 3 S11: -0.1031 S12: 0.0883 S13: -0.0302 REMARK 3 S21: -0.9854 S22: 0.1484 S23: -0.2799 REMARK 3 S31: -0.2765 S32: 0.5826 S33: -0.0529 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8729 -0.0568 7.8962 REMARK 3 T TENSOR REMARK 3 T11: 0.2497 T22: 0.2372 REMARK 3 T33: 0.2044 T12: -0.0533 REMARK 3 T13: -0.0239 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 6.5548 L22: 1.4693 REMARK 3 L33: 4.6262 L12: 1.5897 REMARK 3 L13: -4.2046 L23: -0.9758 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: 0.1413 S13: -0.0941 REMARK 3 S21: -0.0202 S22: 0.0448 S23: 0.1221 REMARK 3 S31: 0.1699 S32: -0.2397 S33: 0.0383 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4780 -4.7590 4.2843 REMARK 3 T TENSOR REMARK 3 T11: 0.2414 T22: 0.3101 REMARK 3 T33: 0.2449 T12: 0.0125 REMARK 3 T13: -0.0326 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.1587 L22: 5.4687 REMARK 3 L33: 1.9266 L12: 2.4097 REMARK 3 L13: 1.0054 L23: 1.6318 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.0762 S13: -0.2149 REMARK 3 S21: 0.0562 S22: 0.1680 S23: -0.4122 REMARK 3 S31: 0.2385 S32: 0.2498 S33: -0.2016 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7061 5.0420 16.8064 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.1491 REMARK 3 T33: 0.1418 T12: -0.0268 REMARK 3 T13: -0.0155 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.2749 L22: 1.4450 REMARK 3 L33: 3.3647 L12: 0.3168 REMARK 3 L13: -0.2377 L23: -0.4503 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: 0.0185 S13: 0.0033 REMARK 3 S21: -0.0168 S22: 0.0416 S23: -0.0318 REMARK 3 S31: -0.0246 S32: 0.0760 S33: -0.0256 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0252 -5.6027 -4.9905 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.2616 REMARK 3 T33: 0.1754 T12: -0.0209 REMARK 3 T13: -0.0153 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.7490 L22: 5.4283 REMARK 3 L33: 2.4967 L12: 0.8487 REMARK 3 L13: 0.4247 L23: 0.7562 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: 0.1556 S13: -0.0539 REMARK 3 S21: -0.1539 S22: 0.0987 S23: 0.0908 REMARK 3 S31: 0.0879 S32: 0.1261 S33: -0.0415 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2493 5.8111 22.7865 REMARK 3 T TENSOR REMARK 3 T11: 0.2137 T22: 0.2206 REMARK 3 T33: 0.2323 T12: -0.0250 REMARK 3 T13: -0.0150 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.2473 L22: 2.3570 REMARK 3 L33: 2.1080 L12: 0.2161 REMARK 3 L13: -0.6695 L23: 1.3229 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.1102 S13: 0.0487 REMARK 3 S21: -0.0940 S22: -0.0238 S23: 0.2421 REMARK 3 S31: -0.1325 S32: -0.1902 S33: 0.0357 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5665 -12.0577 14.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.2277 REMARK 3 T33: 0.1582 T12: -0.0356 REMARK 3 T13: -0.0096 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.5662 L22: 3.6044 REMARK 3 L33: 1.5315 L12: -0.0184 REMARK 3 L13: 0.3317 L23: 0.7188 REMARK 3 S TENSOR REMARK 3 S11: -0.0862 S12: 0.1265 S13: 0.0929 REMARK 3 S21: -0.1374 S22: 0.0467 S23: -0.1178 REMARK 3 S31: -0.0237 S32: 0.0539 S33: 0.0331 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9580 7.1559 20.7807 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.1972 REMARK 3 T33: 0.2305 T12: 0.0089 REMARK 3 T13: 0.0046 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.1199 L22: 3.6999 REMARK 3 L33: 3.6393 L12: 1.0721 REMARK 3 L13: 1.1132 L23: 2.5508 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: 0.0356 S13: 0.2834 REMARK 3 S21: -0.2528 S22: -0.0362 S23: 0.2455 REMARK 3 S31: -0.3654 S32: -0.1273 S33: 0.1214 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 10 or REMARK 3 (resid 11 and (name N or name CA or name REMARK 3 C or name O or name CB or name OG1)) or REMARK 3 resid 12 through 15 or (resid 16 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG2)) or resid 17 through REMARK 3 46 or resid 48 through 57 or resid 59 REMARK 3 through 69 or (resid 70 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or resid 71 through 113 or REMARK 3 resid 115 through 116 or (resid 118 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG )) or resid 119 REMARK 3 through 132 or resid 134 through 147 or REMARK 3 (resid 148 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 149 through 157 or (resid 158 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG )) or resid 159 REMARK 3 through 166 or resid 168 through 176 or REMARK 3 resid 178 through 188 or resid 601 REMARK 3 through 602)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 6 or REMARK 3 (resid 7 and (name N or name CA or name C REMARK 3 or name O or name CB or name CG )) or REMARK 3 resid 8 through 46 or resid 48 through 57 REMARK 3 or resid 59 through 86 or (resid 87 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD or name CE ) REMARK 3 ) or resid 88 through 113 or resid 115 REMARK 3 through 116 or (resid 118 through 120 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG )) or resid 121 REMARK 3 through 132 or resid 134 through 163 or REMARK 3 (resid 164 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 165 REMARK 3 through 166 or resid 168 through 176 or REMARK 3 resid 178 through 188 or resid 401 REMARK 3 through 502)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 47.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 1.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.86250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.28850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.86250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.28850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 47 CE NZ REMARK 470 LYS A 48 CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 87 NZ REMARK 470 LYS A 118 CE NZ REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 ARG A 148 CZ NH1 NH2 REMARK 470 LYS A 158 CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 THR B 11 CG2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 VAL B 16 CG1 REMARK 470 LYS B 47 CD CE NZ REMARK 470 LYS B 48 CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 58 CE NZ REMARK 470 LYS B 70 CD CE NZ REMARK 470 LYS B 118 CD CE NZ REMARK 470 ARG B 148 CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CD CE NZ REMARK 470 GLN B 164 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 30 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 CYS B 30 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -87.71 -100.72 REMARK 500 PRO A 51 -176.60 -64.43 REMARK 500 LYS B 7 -85.57 -98.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 82.2 REMARK 620 3 GLU B 4 OE2 176.6 95.7 REMARK 620 4 ASP B 44 OD1 106.9 27.1 70.5 REMARK 620 5 ASP B 44 OD2 108.4 27.1 69.2 4.2 REMARK 620 6 HOH B 619 O 94.3 88.5 88.3 97.4 93.3 REMARK 620 N 1 2 3 4 5 DBREF 8CXD A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 8CXD B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET CU A 601 1 HET 010 A 602 8 HET 010 A 603 8 HET CU B 401 1 HET 010 B 402 8 HET 010 B 403 16 HET 010 B 404 16 HETNAM CU COPPER (II) ION HETNAM 010 PHENYLMETHANOL FORMUL 3 CU 2(CU 2+) FORMUL 4 010 5(C7 H8 O) FORMUL 10 HOH *245(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N VAL B 22 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.10 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.13 LINK NE2AGLN A 177 CU CU A 601 1555 1555 2.51 LINK N ALA B 1 CU CU B 401 1555 1555 2.16 LINK O ALA B 1 CU CU B 401 1555 1555 2.09 LINK OE2 GLU B 4 CU CU B 401 1555 1555 2.04 LINK OD1 ASP B 44 CU CU B 401 1555 4546 2.19 LINK OD2 ASP B 44 CU CU B 401 1555 4546 2.47 LINK CU CU B 401 O HOH B 619 1555 1555 2.57 CISPEP 1 VAL A 150 PRO A 151 0 -2.79 CISPEP 2 VAL B 150 PRO B 151 0 -2.40 CRYST1 117.725 62.577 74.722 90.00 126.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008494 0.000000 0.006250 0.00000 SCALE2 0.000000 0.015980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016616 0.00000 MTRIX1 1 -0.970678 0.045843 0.235971 34.59869 1 MTRIX2 1 -0.233494 0.053518 -0.970884 12.28537 1 MTRIX3 1 -0.057137 -0.997514 -0.041245 20.58530 1