HEADER HYDROLASE 25-MAY-22 8D0A TITLE CRYSTAL STRUCTURE OF HUMAN USP30 IN COMPLEX WITH A COVALENT INHIBITOR TITLE 2 829 AND A FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 30,UBIQUITIN THIOESTERASE 30, COMPND 5 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 30,UB-SPECIFIC PROTEASE 30; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MOUSE ANTI-HUUSP30 FAB HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: MOUSE ANTI-HUUSP30 FAB LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS DEUBIQUITINASE, COVALENT INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.SONG,J.BUTLER,C.LI,K.ZHANG,D.ZHANG,Y.HAO REVDAT 2 25-OCT-23 8D0A 1 REMARK REVDAT 1 01-FEB-23 8D0A 0 JRNL AUTH X.SONG,J.BUTLER,Y.HAO JRNL TITL TBD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 14822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1100 - 5.4400 0.99 2876 162 0.2421 0.2848 REMARK 3 2 5.4400 - 4.3200 0.99 2830 147 0.2143 0.2616 REMARK 3 3 4.3200 - 3.7800 0.99 2806 134 0.2457 0.2883 REMARK 3 4 3.7800 - 3.4300 0.98 2809 127 0.2657 0.3271 REMARK 3 5 3.4300 - 3.1900 0.99 2796 139 0.2981 0.3650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8D0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14848 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.190 REMARK 200 RESOLUTION RANGE LOW (A) : 42.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHK, 4M43 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 22% PEG 4000, 4% REMARK 280 2,2,2-TRIFLUOROETHANOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.82350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 63 REMARK 465 LYS A 64 REMARK 465 GLY A 65 REMARK 465 ILE A 290 REMARK 465 GLU A 291 REMARK 465 ALA A 292 REMARK 465 LYS A 293 REMARK 465 GLY A 294 REMARK 465 THR A 295 REMARK 465 LEU A 296 REMARK 465 ASN A 297 REMARK 465 GLY A 298 REMARK 465 GLU A 299 REMARK 465 LYS A 300 REMARK 465 VAL A 301 REMARK 465 GLU A 302 REMARK 465 HIS A 303 REMARK 465 GLN A 304 REMARK 465 GLN A 508 REMARK 465 GLY A 509 REMARK 465 PRO A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 465 GLU H 1 REMARK 465 THR H 120 REMARK 465 GLY H 137 REMARK 465 SER H 138 REMARK 465 PHE H 150 REMARK 465 PRO H 151 REMARK 465 GLU H 152 REMARK 465 THR H 157 REMARK 465 TRP H 158 REMARK 465 ASN H 159 REMARK 465 SER H 160 REMARK 465 GLY H 161 REMARK 465 SER H 162 REMARK 465 LEU H 163 REMARK 465 THR H 186 REMARK 465 VAL H 187 REMARK 465 THR H 188 REMARK 465 SER H 189 REMARK 465 SER H 190 REMARK 465 THR H 191 REMARK 465 TRP H 192 REMARK 465 PRO H 193 REMARK 465 SER H 194 REMARK 465 GLN H 195 REMARK 465 SER H 196 REMARK 465 ALA H 202 REMARK 465 HIS H 203 REMARK 465 PRO H 204 REMARK 465 ALA H 205 REMARK 465 VAL H 210 REMARK 465 ASP H 211 REMARK 465 LYS H 212 REMARK 465 LYS H 213 REMARK 465 ILE H 214 REMARK 465 GLY H 215 REMARK 465 GLY H 216 REMARK 465 HIS H 217 REMARK 465 HIS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 TRP L 148 REMARK 465 LYS L 149 REMARK 465 ILE L 150 REMARK 465 ASP L 151 REMARK 465 GLY L 152 REMARK 465 SER L 153 REMARK 465 GLU L 154 REMARK 465 ARG L 155 REMARK 465 SER L 168 REMARK 465 LYS L 169 REMARK 465 THR L 193 REMARK 465 CYS L 194 REMARK 465 SER L 208 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 447 CG OD1 OD2 REMARK 470 MET A 448 CG SD CE REMARK 470 ASP H 31 CG OD1 OD2 REMARK 470 LYS H 119 CG CD CE NZ REMARK 470 TYR H 149 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU H 156 CG CD1 CD2 REMARK 470 TYR H 179 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS L 107 CG CD CE NZ REMARK 470 PHE L 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR L 140 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS L 198 CG ND1 CD2 CE1 NE2 REMARK 470 ARG L 211 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 175 NH1 ARG A 464 1655 2.13 REMARK 500 NH1 ARG A 177 O SER A 332 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 77 C PHE A 78 N 0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 106 -25.24 72.32 REMARK 500 THR A 259 -79.82 -118.63 REMARK 500 GLU A 277 -161.83 -101.18 REMARK 500 THR A 288 1.61 -68.26 REMARK 500 MET A 448 -112.55 37.30 REMARK 500 SER A 462 43.32 -71.16 REMARK 500 ARG A 464 14.69 58.75 REMARK 500 PRO A 466 3.15 -66.50 REMARK 500 ASP A 478 -110.16 54.42 REMARK 500 ALA H 16 -158.27 -95.03 REMARK 500 SER H 25 32.25 -98.05 REMARK 500 PHE H 27 -133.77 -76.25 REMARK 500 ASP H 31 41.29 -83.87 REMARK 500 ASP H 52 73.58 -115.29 REMARK 500 ASN H 55 -138.43 -129.89 REMARK 500 ASP H 90 38.37 -85.07 REMARK 500 THR H 112 79.62 -109.39 REMARK 500 THR H 198 94.38 -162.22 REMARK 500 ASN L 32 59.72 -103.03 REMARK 500 SER L 50 -162.11 -79.96 REMARK 500 THR L 69 -30.51 -139.26 REMARK 500 TYR L 91 24.07 -142.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 CYS A 237 SG 98.2 REMARK 620 3 CYS A 284 SG 106.4 97.4 REMARK 620 4 CYS A 287 SG 128.7 103.7 115.8 REMARK 620 N 1 2 3 DBREF 8D0A A 64 178 UNP Q70CQ3 UBP30_HUMAN 64 178 DBREF 8D0A A 217 357 UNP Q70CQ3 UBP30_HUMAN 217 357 DBREF 8D0A A 432 502 UNP Q70CQ3 UBP30_HUMAN 432 502 DBREF 8D0A H 1 222 PDB 8D0A 8D0A 1 222 DBREF 8D0A L 1 214 PDB 8D0A 8D0A 1 214 SEQADV 8D0A MET A 63 UNP Q70CQ3 INITIATING METHIONINE SEQADV 8D0A GLY A 179 UNP Q70CQ3 LINKER SEQADV 8D0A SER A 180 UNP Q70CQ3 LINKER SEQADV 8D0A GLY A 181 UNP Q70CQ3 LINKER SEQADV 8D0A SER A 182 UNP Q70CQ3 LINKER SEQADV 8D0A ASP A 348 UNP Q70CQ3 PHE 348 ENGINEERED MUTATION SEQADV 8D0A SER A 350 UNP Q70CQ3 MET 350 ENGINEERED MUTATION SEQADV 8D0A GLU A 353 UNP Q70CQ3 ILE 353 ENGINEERED MUTATION SEQADV 8D0A SER A 358 UNP Q70CQ3 LINKER SEQADV 8D0A ASN A 359 UNP Q70CQ3 LINKER SEQADV 8D0A ALA A 360 UNP Q70CQ3 LINKER SEQADV 8D0A LEU A 503 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A GLU A 504 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A VAL A 505 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A LEU A 506 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A PHE A 507 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A GLN A 508 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A GLY A 509 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A PRO A 510 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A HIS A 511 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A HIS A 512 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A HIS A 513 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A HIS A 514 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A HIS A 515 UNP Q70CQ3 EXPRESSION TAG SEQADV 8D0A HIS A 516 UNP Q70CQ3 EXPRESSION TAG SEQRES 1 A 349 MET LYS GLY LEU VAL PRO GLY LEU VAL ASN LEU GLY ASN SEQRES 2 A 349 THR CYS PHE MET ASN SER LEU LEU GLN GLY LEU SER ALA SEQRES 3 A 349 CYS PRO ALA PHE ILE ARG TRP LEU GLU GLU PHE THR SER SEQRES 4 A 349 GLN TYR SER ARG ASP GLN LYS GLU PRO PRO SER HIS GLN SEQRES 5 A 349 TYR LEU SER LEU THR LEU LEU HIS LEU LEU LYS ALA LEU SEQRES 6 A 349 SER CYS GLN GLU VAL THR ASP ASP GLU VAL LEU ASP ALA SEQRES 7 A 349 SER CYS LEU LEU ASP VAL LEU ARG MET TYR ARG TRP GLN SEQRES 8 A 349 ILE SER SER PHE GLU GLU GLN ASP ALA HIS GLU LEU PHE SEQRES 9 A 349 HIS VAL ILE THR SER SER LEU GLU ASP GLU ARG ASP GLY SEQRES 10 A 349 SER GLY SER HIS TRP LYS SER GLN HIS PRO PHE HIS GLY SEQRES 11 A 349 ARG LEU THR SER ASN MET VAL CYS LYS HIS CYS GLU HIS SEQRES 12 A 349 GLN SER PRO VAL ARG PHE ASP THR PHE ASP SER LEU SER SEQRES 13 A 349 LEU SER ILE PRO ALA ALA THR TRP GLY HIS PRO LEU THR SEQRES 14 A 349 LEU ASP HIS CYS LEU HIS HIS PHE ILE SER SER GLU SER SEQRES 15 A 349 VAL ARG ASP VAL VAL CYS ASP ASN CYS THR LYS ILE GLU SEQRES 16 A 349 ALA LYS GLY THR LEU ASN GLY GLU LYS VAL GLU HIS GLN SEQRES 17 A 349 ARG THR THR PHE VAL LYS GLN LEU LYS LEU GLY LYS LEU SEQRES 18 A 349 PRO GLN CYS LEU CYS ILE HIS LEU GLN ARG LEU SER TRP SEQRES 19 A 349 SER SER HIS GLY THR PRO LEU LYS ARG HIS GLU HIS VAL SEQRES 20 A 349 GLN PHE ASN GLU ASP LEU SER MET ASP GLU TYR LYS TYR SEQRES 21 A 349 HIS SER ASN ALA SER THR TYR LEU PHE ARG LEU MET ALA SEQRES 22 A 349 VAL VAL VAL HIS HIS GLY ASP MET HIS SER GLY HIS PHE SEQRES 23 A 349 VAL THR TYR ARG ARG SER PRO PRO SER ALA ARG ASN PRO SEQRES 24 A 349 LEU SER THR SER ASN GLN TRP LEU TRP VAL SER ASP ASP SEQRES 25 A 349 THR VAL ARG LYS ALA SER LEU GLN GLU VAL LEU SER SER SEQRES 26 A 349 SER ALA TYR LEU LEU PHE TYR GLU ARG VAL LEU GLU VAL SEQRES 27 A 349 LEU PHE GLN GLY PRO HIS HIS HIS HIS HIS HIS SEQRES 1 H 222 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 H 222 PRO GLY ALA SER VAL LYS LEU SER CYS THR GLY SER GLY SEQRES 3 H 222 PHE ASN ILE LYS ASP THR TYR MET HIS TRP VAL LYS GLN SEQRES 4 H 222 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 222 PRO ALA ASN GLY ASN THR LYS TYR ASP PRO LYS PHE GLN SEQRES 6 H 222 GLY LYS ALA THR MET THR ALA ASP THR SER SER ASN THR SEQRES 7 H 222 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 222 ALA VAL TYR TYR CYS ALA ARG PRO ASP GLY TYR TYR GLY SEQRES 9 H 222 ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER SEQRES 10 H 222 ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 222 VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU GLY SEQRES 12 H 222 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU SEQRES 13 H 222 THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR SEQRES 14 H 222 PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SEQRES 15 H 222 SER SER VAL THR VAL THR SER SER THR TRP PRO SER GLN SEQRES 16 H 222 SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 222 LYS VAL ASP LYS LYS ILE GLY GLY HIS HIS HIS HIS HIS SEQRES 18 H 222 HIS SEQRES 1 L 214 ASP ILE VAL MET THR GLN SER GLN LYS PHE MET SER THR SEQRES 2 L 214 SER VAL GLY ASP ARG VAL SER VAL THR CYS LYS ALA SER SEQRES 3 L 214 GLN ASN VAL GLY THR ASN VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN SER PRO LYS ALA LEU ILE TYR SER ALA SER SEQRES 5 L 214 TYR ARG TYR SER GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER ASN VAL SEQRES 7 L 214 GLN SER GLU ASP LEU ALA GLU TYR PHE CYS GLN GLN TYR SEQRES 8 L 214 ASN SER PHE PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 L 214 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS HET PKH A 601 28 HET ZN A 602 1 HETNAM PKH ~{N}-[(1~{R},2~{R},4~{S},7~{E})-7-[AZANYL(SULFANYL) HETNAM 2 PKH METHYLIDENE]-7$L^{4}-AZABICYCLO[2.2.1]HEPTAN-2-YL]-2- HETNAM 3 PKH CHLORANYL-4-(6-CYCLOPROPYLPYRAZIN-2-YL)BENZAMIDE HETNAM ZN ZINC ION FORMUL 4 PKH C21 H23 CL N5 O S 1+ FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *19(H2 O) HELIX 1 AA1 THR A 76 SER A 87 1 12 HELIX 2 AA2 CYS A 89 GLN A 102 1 14 HELIX 3 AA3 GLN A 114 CYS A 129 1 16 HELIX 4 AA4 ALA A 140 MET A 149 1 10 HELIX 5 AA5 SER A 156 GLN A 160 5 5 HELIX 6 AA6 ASP A 161 ASP A 178 1 18 HELIX 7 AA7 LEU A 266 ILE A 274 1 9 HELIX 8 AA8 ASP A 447 GLY A 451 5 5 HELIX 9 AA9 SER A 485 SER A 492 1 8 HELIX 10 AB1 THR H 87 THR H 91 5 5 HELIX 11 AB2 SER L 121 SER L 127 1 7 HELIX 12 AB3 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 2 GLY A 69 LEU A 70 0 SHEET 2 AA1 2 VAL A 137 LEU A 138 1 O LEU A 138 N GLY A 69 SHEET 1 AA2 3 HIS A 239 GLN A 240 0 SHEET 2 AA2 3 GLY A 226 CYS A 234 -1 N CYS A 234 O HIS A 239 SHEET 3 AA2 3 ARG A 244 PHE A 248 -1 O ARG A 244 N SER A 230 SHEET 1 AA3 4 HIS A 239 GLN A 240 0 SHEET 2 AA3 4 GLY A 226 CYS A 234 -1 N CYS A 234 O HIS A 239 SHEET 3 AA3 4 PHE A 308 LYS A 316 -1 O LYS A 313 N THR A 229 SHEET 4 AA3 4 SER A 278 VAL A 279 -1 N VAL A 279 O PHE A 308 SHEET 1 AA4 5 LEU A 251 LEU A 253 0 SHEET 2 AA4 5 CYS A 320 LEU A 325 1 O HIS A 324 N LEU A 253 SHEET 3 AA4 5 ALA A 494 VAL A 502 -1 O TYR A 499 N LEU A 321 SHEET 4 AA4 5 LEU A 435 HIS A 445 -1 N ARG A 437 O GLU A 500 SHEET 5 AA4 5 ASP A 348 SER A 350 -1 N LEU A 349 O PHE A 436 SHEET 1 AA5 7 LEU A 251 LEU A 253 0 SHEET 2 AA5 7 CYS A 320 LEU A 325 1 O HIS A 324 N LEU A 253 SHEET 3 AA5 7 ALA A 494 VAL A 502 -1 O TYR A 499 N LEU A 321 SHEET 4 AA5 7 LEU A 435 HIS A 445 -1 N ARG A 437 O GLU A 500 SHEET 5 AA5 7 HIS A 452 ARG A 458 -1 O TYR A 456 N VAL A 441 SHEET 6 AA5 7 TRP A 473 SER A 477 -1 O LEU A 474 N ARG A 457 SHEET 7 AA5 7 THR A 480 ALA A 484 -1 O ARG A 482 N TRP A 475 SHEET 1 AA6 2 LEU A 264 THR A 265 0 SHEET 2 AA6 2 VAL A 343 GLN A 344 1 O GLN A 344 N LEU A 264 SHEET 1 AA7 2 LEU A 328 TRP A 330 0 SHEET 2 AA7 2 PRO A 336 LYS A 338 -1 O LEU A 337 N SER A 329 SHEET 1 AA8 4 LEU H 4 GLN H 6 0 SHEET 2 AA8 4 SER H 17 GLY H 24 -1 O THR H 23 N GLN H 5 SHEET 3 AA8 4 ALA H 79 SER H 84 -1 O LEU H 81 N LEU H 20 SHEET 4 AA8 4 ALA H 68 ALA H 72 -1 N THR H 69 O GLN H 82 SHEET 1 AA9 6 LEU H 11 VAL H 12 0 SHEET 2 AA9 6 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA9 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 111 SHEET 4 AA9 6 MET H 34 ARG H 40 -1 N GLN H 39 O VAL H 93 SHEET 5 AA9 6 GLY H 44 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA9 6 LYS H 59 TYR H 60 -1 O LYS H 59 N ARG H 50 SHEET 1 AB1 4 LEU H 11 VAL H 12 0 SHEET 2 AB1 4 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AB1 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 111 SHEET 4 AB1 4 TYR H 106 TRP H 107 -1 O TYR H 106 N ARG H 98 SHEET 1 AB2 4 VAL H 125 LEU H 128 0 SHEET 2 AB2 4 LEU H 142 TYR H 149 -1 O LEU H 145 N TYR H 126 SHEET 3 AB2 4 LEU H 178 VAL H 185 -1 O VAL H 185 N LEU H 142 SHEET 4 AB2 4 HIS H 168 THR H 169 -1 N HIS H 168 O SER H 184 SHEET 1 AB3 4 VAL H 125 LEU H 128 0 SHEET 2 AB3 4 LEU H 142 TYR H 149 -1 O LEU H 145 N TYR H 126 SHEET 3 AB3 4 LEU H 178 VAL H 185 -1 O VAL H 185 N LEU H 142 SHEET 4 AB3 4 VAL H 173 GLN H 175 -1 N GLN H 175 O LEU H 178 SHEET 1 AB4 4 MET L 4 GLN L 6 0 SHEET 2 AB4 4 ARG L 18 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AB4 4 ASP L 70 SER L 76 -1 O LEU L 73 N VAL L 21 SHEET 4 AB4 4 PHE L 62 SER L 67 -1 N THR L 63 O THR L 74 SHEET 1 AB5 5 PHE L 10 THR L 13 0 SHEET 2 AB5 5 THR L 102 LEU L 106 1 O GLU L 105 N THR L 13 SHEET 3 AB5 5 GLU L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB5 5 VAL L 33 GLN L 38 -1 N GLN L 38 O GLU L 85 SHEET 5 AB5 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 AB6 4 THR L 114 PHE L 118 0 SHEET 2 AB6 4 GLY L 129 ASN L 137 -1 O ASN L 137 N THR L 114 SHEET 3 AB6 4 SER L 174 THR L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB6 4 LEU L 160 TRP L 163 -1 N SER L 162 O SER L 176 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 2 CYS H 144 CYS H 199 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 LINK SG CYS A 77 C12 PKH A 601 1555 1555 1.58 LINK SG CYS A 234 ZN ZN A 602 1555 1555 2.38 LINK SG CYS A 237 ZN ZN A 602 1555 1555 2.50 LINK SG CYS A 284 ZN ZN A 602 1555 1555 2.39 LINK SG CYS A 287 ZN ZN A 602 1555 1555 2.69 CISPEP 1 PHE L 94 PRO L 95 0 -0.84 CRYST1 42.229 71.647 148.456 90.00 94.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023680 0.000000 0.001785 0.00000 SCALE2 0.000000 0.013957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006755 0.00000