data_8D0F # _entry.id 8D0F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8D0F pdb_00008d0f 10.2210/pdb8d0f/pdb WWPDB D_1000265339 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Same protein, different ligand' 8D0H unspecified PDB 'Same protein, Apo' 8D0J unspecified PDB 'Same protein, different ligand' 8D0E unspecified PDB 'Same protein, different ligand' 8D0D unspecified PDB 'Same protein, different ligand' 8D0C unspecified PDB 'Same protein, different ligand' 8D0G unspecified PDB 'Same protein, different ligand' 8D0I unspecified PDB 'Different protein, same citation' 8D0M unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8D0F _pdbx_database_status.recvd_initial_deposition_date 2022-05-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bratkowski, M.A.' 1 0000-0003-3911-0533 'Mathur, P.' 2 0000-0002-3129-4465 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Neuron _citation.journal_id_ASTM NERNET _citation.journal_id_CSD 2038 _citation.journal_id_ISSN 0896-6273 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 110 _citation.language ? _citation.page_first 3711 _citation.page_last ? _citation.title 'Uncompetitive, adduct-forming SARM1 inhibitors are neuroprotective in preclinical models of nerve injury and disease.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.neuron.2022.08.017 _citation.pdbx_database_id_PubMed 36087583 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bratkowski, M.' 1 ? primary 'Burdett, T.C.' 2 ? primary 'Danao, J.' 3 ? primary 'Wang, X.' 4 ? primary 'Mathur, P.' 5 ? primary 'Gu, W.' 6 ? primary 'Beckstead, J.A.' 7 ? primary 'Talreja, S.' 8 ? primary 'Yang, Y.S.' 9 ? primary 'Danko, G.' 10 ? primary 'Park, J.H.' 11 ? primary 'Walton, M.' 12 ? primary 'Brown, S.P.' 13 ? primary 'Tegley, C.M.' 14 ? primary 'Joseph, P.R.B.' 15 ? primary 'Reynolds, C.H.' 16 ? primary 'Sambashivan, S.' 17 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8D0F _cell.details ? _cell.formula_units_Z ? _cell.length_a 32.940 _cell.length_a_esd ? _cell.length_b 86.363 _cell.length_b_esd ? _cell.length_c 115.757 _cell.length_c_esd ? _cell.volume 329305.192 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8D0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NAD(+) hydrolase SARM1' 16205.574 2 3.2.2.6,3.2.2.- ? 'TIR domain' ? 2 non-polymer syn ;[[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]methyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; 789.525 2 ? ? ? ? 3 water nat water 18.015 166 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;NADase SARM1,hSARM1,NADP(+) hydrolase SARM1,Sterile alpha and Armadillo repeat protein,Sterile alpha and TIR motif-containing protein 1,Sterile alpha motif domain-containing protein 2,MyD88-5,SAM domain-containing protein 2,Tir-1 homolog,HsTIR ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SGDTPDVFISYRRNSGSQLASLLKVHLQLHGFSVFIDVEKLEAGKFEDKLIQSVMGARNFVLVLSPGALDKCMQDHDCKD WVHKEIVTALSCGKNIVPIIDGFEWPEPQVLPEDMQAVLTFNGIKWSHEYQEATIEKIIRFLQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SGDTPDVFISYRRNSGSQLASLLKVHLQLHGFSVFIDVEKLEAGKFEDKLIQSVMGARNFVLVLSPGALDKCMQDHDCKD WVHKEIVTALSCGKNIVPIIDGFEWPEPQVLPEDMQAVLTFNGIKWSHEYQEATIEKIIRFLQ ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 ASP n 1 4 THR n 1 5 PRO n 1 6 ASP n 1 7 VAL n 1 8 PHE n 1 9 ILE n 1 10 SER n 1 11 TYR n 1 12 ARG n 1 13 ARG n 1 14 ASN n 1 15 SER n 1 16 GLY n 1 17 SER n 1 18 GLN n 1 19 LEU n 1 20 ALA n 1 21 SER n 1 22 LEU n 1 23 LEU n 1 24 LYS n 1 25 VAL n 1 26 HIS n 1 27 LEU n 1 28 GLN n 1 29 LEU n 1 30 HIS n 1 31 GLY n 1 32 PHE n 1 33 SER n 1 34 VAL n 1 35 PHE n 1 36 ILE n 1 37 ASP n 1 38 VAL n 1 39 GLU n 1 40 LYS n 1 41 LEU n 1 42 GLU n 1 43 ALA n 1 44 GLY n 1 45 LYS n 1 46 PHE n 1 47 GLU n 1 48 ASP n 1 49 LYS n 1 50 LEU n 1 51 ILE n 1 52 GLN n 1 53 SER n 1 54 VAL n 1 55 MET n 1 56 GLY n 1 57 ALA n 1 58 ARG n 1 59 ASN n 1 60 PHE n 1 61 VAL n 1 62 LEU n 1 63 VAL n 1 64 LEU n 1 65 SER n 1 66 PRO n 1 67 GLY n 1 68 ALA n 1 69 LEU n 1 70 ASP n 1 71 LYS n 1 72 CYS n 1 73 MET n 1 74 GLN n 1 75 ASP n 1 76 HIS n 1 77 ASP n 1 78 CYS n 1 79 LYS n 1 80 ASP n 1 81 TRP n 1 82 VAL n 1 83 HIS n 1 84 LYS n 1 85 GLU n 1 86 ILE n 1 87 VAL n 1 88 THR n 1 89 ALA n 1 90 LEU n 1 91 SER n 1 92 CYS n 1 93 GLY n 1 94 LYS n 1 95 ASN n 1 96 ILE n 1 97 VAL n 1 98 PRO n 1 99 ILE n 1 100 ILE n 1 101 ASP n 1 102 GLY n 1 103 PHE n 1 104 GLU n 1 105 TRP n 1 106 PRO n 1 107 GLU n 1 108 PRO n 1 109 GLN n 1 110 VAL n 1 111 LEU n 1 112 PRO n 1 113 GLU n 1 114 ASP n 1 115 MET n 1 116 GLN n 1 117 ALA n 1 118 VAL n 1 119 LEU n 1 120 THR n 1 121 PHE n 1 122 ASN n 1 123 GLY n 1 124 ILE n 1 125 LYS n 1 126 TRP n 1 127 SER n 1 128 HIS n 1 129 GLU n 1 130 TYR n 1 131 GLN n 1 132 GLU n 1 133 ALA n 1 134 THR n 1 135 ILE n 1 136 GLU n 1 137 LYS n 1 138 ILE n 1 139 ILE n 1 140 ARG n 1 141 PHE n 1 142 LEU n 1 143 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 143 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SARM1, KIAA0524, SAMD2, SARM' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SARM1_HUMAN _struct_ref.pdbx_db_accession Q6SZW1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SGDTPDVFISYRRNSGSQLASLLKVHLQLHGFSVFIDVEKLEAGKFEDKLIQSVMGARNFVLVLSPGALDKCMQDHDCKD WVHKEIVTALSCGKNIVPIIDGFEWPEPQVLPEDMQAVLTFNGIKWSHEYQEATIEKIIRFLQ ; _struct_ref.pdbx_align_begin 558 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8D0F A 1 ? 143 ? Q6SZW1 558 ? 700 ? 558 700 2 1 8D0F B 1 ? 143 ? Q6SZW1 558 ? 700 ? 558 700 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 Q0U non-polymer . ;[[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]methyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; ? 'C25 H34 F3 N8 O14 P2 1' 789.525 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8D0F _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-05-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97741 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97741 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 19.95 _reflns.entry_id 8D0F _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.74 _reflns.d_resolution_low 48.08 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 34455 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13 _reflns.pdbx_Rmerge_I_obs 0.135 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.147 _reflns.pdbx_Rpim_I_all 0.040 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 1.74 _reflns_shell.d_res_low 1.77 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 13 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3371 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.364 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.482 _reflns_shell.pdbx_Rpim_I_all 0.415 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.776 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 25.11 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8D0F _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.74 _refine.ls_d_res_low 48.08 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 34455 _refine.ls_number_reflns_R_free 2000 _refine.ls_number_reflns_R_work 32455 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.86 _refine.ls_percent_reflns_R_free 5.80 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2150 _refine.ls_R_factor_R_free 0.2531 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2126 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 8D0J _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.4293 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2164 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.74 _refine_hist.d_res_low 48.08 _refine_hist.number_atoms_solvent 166 _refine_hist.number_atoms_total 2508 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2238 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 104 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0061 ? 2409 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9274 ? 3279 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0566 ? 361 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0054 ? 404 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 16.9572 ? 306 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.74 1.78 . . 140 2272 99.71 . . . 0.3392 . 0.2979 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.78 1.83 . . 139 2241 95.89 . . . 0.3415 . 0.2691 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.83 1.89 . . 139 2262 100.00 . . . 0.2992 . 0.2663 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.89 1.95 . . 138 2254 96.76 . . . 0.2932 . 0.2428 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.95 2.02 . . 143 2308 99.92 . . . 0.2808 . 0.2368 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.02 2.10 . . 139 2255 97.59 . . . 0.2735 . 0.2174 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.10 2.19 . . 142 2308 98.35 . . . 0.2671 . 0.2162 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.19 2.31 . . 142 2300 99.59 . . . 0.2294 . 0.2144 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.31 2.45 . . 140 2286 98.74 . . . 0.2914 . 0.2176 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.45 2.64 . . 144 2326 99.08 . . . 0.3223 . 0.2281 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.64 2.91 . . 145 2341 99.48 . . . 0.2706 . 0.2212 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.91 3.33 . . 145 2370 99.33 . . . 0.2446 . 0.2133 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.33 4.19 . . 148 2401 99.77 . . . 0.2169 . 0.1843 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.19 48.08 . . 156 2531 99.74 . . . 0.2034 . 0.1884 . . . . . . . . . . . # _struct.entry_id 8D0F _struct.title 'Human SARM1 TIR domain bound to NB-2-ADPR' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8D0F _struct_keywords.text 'NAD, hydrolase, axon degeneration, neuroscience, HYDROLASE-INHIBITOR complex' _struct_keywords.pdbx_keywords HYDROLASE/INHIBITOR # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 12 ? HIS A 30 ? ARG A 569 HIS A 587 1 ? 19 HELX_P HELX_P2 AA2 ILE A 36 ? LEU A 41 ? ILE A 593 LEU A 598 1 ? 6 HELX_P HELX_P3 AA3 LYS A 45 ? ALA A 57 ? LYS A 602 ALA A 614 1 ? 13 HELX_P HELX_P4 AA4 LEU A 69 ? MET A 73 ? LEU A 626 MET A 630 5 ? 5 HELX_P HELX_P5 AA5 ASP A 80 ? CYS A 92 ? ASP A 637 CYS A 649 1 ? 13 HELX_P HELX_P6 AA6 GLU A 107 ? LEU A 111 ? GLU A 664 LEU A 668 5 ? 5 HELX_P HELX_P7 AA7 PRO A 112 ? PHE A 121 ? PRO A 669 PHE A 678 5 ? 10 HELX_P HELX_P8 AA8 TYR A 130 ? LEU A 142 ? TYR A 687 LEU A 699 1 ? 13 HELX_P HELX_P9 AA9 ARG B 12 ? HIS B 30 ? ARG B 569 HIS B 587 1 ? 19 HELX_P HELX_P10 AB1 ILE B 36 ? LEU B 41 ? ILE B 593 LEU B 598 1 ? 6 HELX_P HELX_P11 AB2 LYS B 45 ? ALA B 57 ? LYS B 602 ALA B 614 1 ? 13 HELX_P HELX_P12 AB3 LEU B 69 ? MET B 73 ? LEU B 626 MET B 630 5 ? 5 HELX_P HELX_P13 AB4 ASP B 80 ? CYS B 92 ? ASP B 637 CYS B 649 1 ? 13 HELX_P HELX_P14 AB5 GLU B 107 ? LEU B 111 ? GLU B 664 LEU B 668 5 ? 5 HELX_P HELX_P15 AB6 MET B 115 ? PHE B 121 ? MET B 672 PHE B 678 5 ? 7 HELX_P HELX_P16 AB7 TYR B 130 ? LEU B 142 ? TYR B 687 LEU B 699 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 34 ? PHE A 35 ? VAL A 591 PHE A 592 AA1 2 VAL A 7 ? SER A 10 ? VAL A 564 SER A 567 AA1 3 ASN A 59 ? LEU A 64 ? ASN A 616 LEU A 621 AA1 4 ASN A 95 ? ILE A 100 ? ASN A 652 ILE A 657 AA1 5 ILE A 124 ? LYS A 125 ? ILE A 681 LYS A 682 AA2 1 VAL B 34 ? PHE B 35 ? VAL B 591 PHE B 592 AA2 2 VAL B 7 ? SER B 10 ? VAL B 564 SER B 567 AA2 3 ASN B 59 ? LEU B 64 ? ASN B 616 LEU B 621 AA2 4 ASN B 95 ? ILE B 100 ? ASN B 652 ILE B 657 AA2 5 ILE B 124 ? LYS B 125 ? ILE B 681 LYS B 682 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE A 35 ? O PHE A 592 N VAL A 7 ? N VAL A 564 AA1 2 3 N SER A 10 ? N SER A 567 O VAL A 63 ? O VAL A 620 AA1 3 4 N LEU A 62 ? N LEU A 619 O ILE A 99 ? O ILE A 656 AA1 4 5 N ILE A 100 ? N ILE A 657 O ILE A 124 ? O ILE A 681 AA2 1 2 O PHE B 35 ? O PHE B 592 N VAL B 7 ? N VAL B 564 AA2 2 3 N SER B 10 ? N SER B 567 O VAL B 63 ? O VAL B 620 AA2 3 4 N LEU B 62 ? N LEU B 619 O ILE B 99 ? O ILE B 656 AA2 4 5 N ILE B 100 ? N ILE B 657 O ILE B 124 ? O ILE B 681 # _atom_sites.entry_id 8D0F _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.030358 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011579 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008639 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? F ? ? 4.90428 4.07044 ? ? 12.99538 1.63651 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 558 ? ? ? A . n A 1 2 GLY 2 559 ? ? ? A . n A 1 3 ASP 3 560 ? ? ? A . n A 1 4 THR 4 561 561 THR THR A . n A 1 5 PRO 5 562 562 PRO PRO A . n A 1 6 ASP 6 563 563 ASP ASP A . n A 1 7 VAL 7 564 564 VAL VAL A . n A 1 8 PHE 8 565 565 PHE PHE A . n A 1 9 ILE 9 566 566 ILE ILE A . n A 1 10 SER 10 567 567 SER SER A . n A 1 11 TYR 11 568 568 TYR TYR A . n A 1 12 ARG 12 569 569 ARG ARG A . n A 1 13 ARG 13 570 570 ARG ARG A . n A 1 14 ASN 14 571 571 ASN ASN A . n A 1 15 SER 15 572 572 SER SER A . n A 1 16 GLY 16 573 573 GLY GLY A . n A 1 17 SER 17 574 574 SER SER A . n A 1 18 GLN 18 575 575 GLN GLN A . n A 1 19 LEU 19 576 576 LEU LEU A . n A 1 20 ALA 20 577 577 ALA ALA A . n A 1 21 SER 21 578 578 SER SER A . n A 1 22 LEU 22 579 579 LEU LEU A . n A 1 23 LEU 23 580 580 LEU LEU A . n A 1 24 LYS 24 581 581 LYS LYS A . n A 1 25 VAL 25 582 582 VAL VAL A . n A 1 26 HIS 26 583 583 HIS HIS A . n A 1 27 LEU 27 584 584 LEU LEU A . n A 1 28 GLN 28 585 585 GLN GLN A . n A 1 29 LEU 29 586 586 LEU LEU A . n A 1 30 HIS 30 587 587 HIS HIS A . n A 1 31 GLY 31 588 588 GLY GLY A . n A 1 32 PHE 32 589 589 PHE PHE A . n A 1 33 SER 33 590 590 SER SER A . n A 1 34 VAL 34 591 591 VAL VAL A . n A 1 35 PHE 35 592 592 PHE PHE A . n A 1 36 ILE 36 593 593 ILE ILE A . n A 1 37 ASP 37 594 594 ASP ASP A . n A 1 38 VAL 38 595 595 VAL VAL A . n A 1 39 GLU 39 596 596 GLU GLU A . n A 1 40 LYS 40 597 597 LYS LYS A . n A 1 41 LEU 41 598 598 LEU LEU A . n A 1 42 GLU 42 599 599 GLU GLU A . n A 1 43 ALA 43 600 600 ALA ALA A . n A 1 44 GLY 44 601 601 GLY GLY A . n A 1 45 LYS 45 602 602 LYS LYS A . n A 1 46 PHE 46 603 603 PHE PHE A . n A 1 47 GLU 47 604 604 GLU GLU A . n A 1 48 ASP 48 605 605 ASP ASP A . n A 1 49 LYS 49 606 606 LYS LYS A . n A 1 50 LEU 50 607 607 LEU LEU A . n A 1 51 ILE 51 608 608 ILE ILE A . n A 1 52 GLN 52 609 609 GLN GLN A . n A 1 53 SER 53 610 610 SER SER A . n A 1 54 VAL 54 611 611 VAL VAL A . n A 1 55 MET 55 612 612 MET MET A . n A 1 56 GLY 56 613 613 GLY GLY A . n A 1 57 ALA 57 614 614 ALA ALA A . n A 1 58 ARG 58 615 615 ARG ARG A . n A 1 59 ASN 59 616 616 ASN ASN A . n A 1 60 PHE 60 617 617 PHE PHE A . n A 1 61 VAL 61 618 618 VAL VAL A . n A 1 62 LEU 62 619 619 LEU LEU A . n A 1 63 VAL 63 620 620 VAL VAL A . n A 1 64 LEU 64 621 621 LEU LEU A . n A 1 65 SER 65 622 622 SER SER A . n A 1 66 PRO 66 623 623 PRO PRO A . n A 1 67 GLY 67 624 624 GLY GLY A . n A 1 68 ALA 68 625 625 ALA ALA A . n A 1 69 LEU 69 626 626 LEU LEU A . n A 1 70 ASP 70 627 627 ASP ASP A . n A 1 71 LYS 71 628 628 LYS LYS A . n A 1 72 CYS 72 629 629 CYS CYS A . n A 1 73 MET 73 630 630 MET MET A . n A 1 74 GLN 74 631 631 GLN GLN A . n A 1 75 ASP 75 632 632 ASP ASP A . n A 1 76 HIS 76 633 633 HIS HIS A . n A 1 77 ASP 77 634 634 ASP ASP A . n A 1 78 CYS 78 635 635 CYS CYS A . n A 1 79 LYS 79 636 636 LYS LYS A . n A 1 80 ASP 80 637 637 ASP ASP A . n A 1 81 TRP 81 638 638 TRP TRP A . n A 1 82 VAL 82 639 639 VAL VAL A . n A 1 83 HIS 83 640 640 HIS HIS A . n A 1 84 LYS 84 641 641 LYS LYS A . n A 1 85 GLU 85 642 642 GLU GLU A . n A 1 86 ILE 86 643 643 ILE ILE A . n A 1 87 VAL 87 644 644 VAL VAL A . n A 1 88 THR 88 645 645 THR THR A . n A 1 89 ALA 89 646 646 ALA ALA A . n A 1 90 LEU 90 647 647 LEU LEU A . n A 1 91 SER 91 648 648 SER SER A . n A 1 92 CYS 92 649 649 CYS CYS A . n A 1 93 GLY 93 650 650 GLY GLY A . n A 1 94 LYS 94 651 651 LYS LYS A . n A 1 95 ASN 95 652 652 ASN ASN A . n A 1 96 ILE 96 653 653 ILE ILE A . n A 1 97 VAL 97 654 654 VAL VAL A . n A 1 98 PRO 98 655 655 PRO PRO A . n A 1 99 ILE 99 656 656 ILE ILE A . n A 1 100 ILE 100 657 657 ILE ILE A . n A 1 101 ASP 101 658 658 ASP ASP A . n A 1 102 GLY 102 659 659 GLY GLY A . n A 1 103 PHE 103 660 660 PHE PHE A . n A 1 104 GLU 104 661 661 GLU GLU A . n A 1 105 TRP 105 662 662 TRP TRP A . n A 1 106 PRO 106 663 663 PRO PRO A . n A 1 107 GLU 107 664 664 GLU GLU A . n A 1 108 PRO 108 665 665 PRO PRO A . n A 1 109 GLN 109 666 666 GLN GLN A . n A 1 110 VAL 110 667 667 VAL VAL A . n A 1 111 LEU 111 668 668 LEU LEU A . n A 1 112 PRO 112 669 669 PRO PRO A . n A 1 113 GLU 113 670 670 GLU GLU A . n A 1 114 ASP 114 671 671 ASP ASP A . n A 1 115 MET 115 672 672 MET MET A . n A 1 116 GLN 116 673 673 GLN GLN A . n A 1 117 ALA 117 674 674 ALA ALA A . n A 1 118 VAL 118 675 675 VAL VAL A . n A 1 119 LEU 119 676 676 LEU LEU A . n A 1 120 THR 120 677 677 THR THR A . n A 1 121 PHE 121 678 678 PHE PHE A . n A 1 122 ASN 122 679 679 ASN ASN A . n A 1 123 GLY 123 680 680 GLY GLY A . n A 1 124 ILE 124 681 681 ILE ILE A . n A 1 125 LYS 125 682 682 LYS LYS A . n A 1 126 TRP 126 683 683 TRP TRP A . n A 1 127 SER 127 684 684 SER SER A . n A 1 128 HIS 128 685 685 HIS HIS A . n A 1 129 GLU 129 686 686 GLU GLU A . n A 1 130 TYR 130 687 687 TYR TYR A . n A 1 131 GLN 131 688 688 GLN GLN A . n A 1 132 GLU 132 689 689 GLU GLU A . n A 1 133 ALA 133 690 690 ALA ALA A . n A 1 134 THR 134 691 691 THR THR A . n A 1 135 ILE 135 692 692 ILE ILE A . n A 1 136 GLU 136 693 693 GLU GLU A . n A 1 137 LYS 137 694 694 LYS LYS A . n A 1 138 ILE 138 695 695 ILE ILE A . n A 1 139 ILE 139 696 696 ILE ILE A . n A 1 140 ARG 140 697 697 ARG ARG A . n A 1 141 PHE 141 698 698 PHE PHE A . n A 1 142 LEU 142 699 699 LEU LEU A . n A 1 143 GLN 143 700 700 GLN GLN A . n B 1 1 SER 1 558 ? ? ? B . n B 1 2 GLY 2 559 ? ? ? B . n B 1 3 ASP 3 560 ? ? ? B . n B 1 4 THR 4 561 561 THR THR B . n B 1 5 PRO 5 562 562 PRO PRO B . n B 1 6 ASP 6 563 563 ASP ASP B . n B 1 7 VAL 7 564 564 VAL VAL B . n B 1 8 PHE 8 565 565 PHE PHE B . n B 1 9 ILE 9 566 566 ILE ILE B . n B 1 10 SER 10 567 567 SER SER B . n B 1 11 TYR 11 568 568 TYR TYR B . n B 1 12 ARG 12 569 569 ARG ARG B . n B 1 13 ARG 13 570 570 ARG ARG B . n B 1 14 ASN 14 571 571 ASN ASN B . n B 1 15 SER 15 572 572 SER SER B . n B 1 16 GLY 16 573 573 GLY GLY B . n B 1 17 SER 17 574 574 SER SER B . n B 1 18 GLN 18 575 575 GLN GLN B . n B 1 19 LEU 19 576 576 LEU LEU B . n B 1 20 ALA 20 577 577 ALA ALA B . n B 1 21 SER 21 578 578 SER SER B . n B 1 22 LEU 22 579 579 LEU LEU B . n B 1 23 LEU 23 580 580 LEU LEU B . n B 1 24 LYS 24 581 581 LYS LYS B . n B 1 25 VAL 25 582 582 VAL VAL B . n B 1 26 HIS 26 583 583 HIS HIS B . n B 1 27 LEU 27 584 584 LEU LEU B . n B 1 28 GLN 28 585 585 GLN GLN B . n B 1 29 LEU 29 586 586 LEU LEU B . n B 1 30 HIS 30 587 587 HIS HIS B . n B 1 31 GLY 31 588 588 GLY GLY B . n B 1 32 PHE 32 589 589 PHE PHE B . n B 1 33 SER 33 590 590 SER SER B . n B 1 34 VAL 34 591 591 VAL VAL B . n B 1 35 PHE 35 592 592 PHE PHE B . n B 1 36 ILE 36 593 593 ILE ILE B . n B 1 37 ASP 37 594 594 ASP ASP B . n B 1 38 VAL 38 595 595 VAL VAL B . n B 1 39 GLU 39 596 596 GLU GLU B . n B 1 40 LYS 40 597 597 LYS LYS B . n B 1 41 LEU 41 598 598 LEU LEU B . n B 1 42 GLU 42 599 599 GLU GLU B . n B 1 43 ALA 43 600 600 ALA ALA B . n B 1 44 GLY 44 601 601 GLY GLY B . n B 1 45 LYS 45 602 602 LYS LYS B . n B 1 46 PHE 46 603 603 PHE PHE B . n B 1 47 GLU 47 604 604 GLU GLU B . n B 1 48 ASP 48 605 605 ASP ASP B . n B 1 49 LYS 49 606 606 LYS LYS B . n B 1 50 LEU 50 607 607 LEU LEU B . n B 1 51 ILE 51 608 608 ILE ILE B . n B 1 52 GLN 52 609 609 GLN GLN B . n B 1 53 SER 53 610 610 SER SER B . n B 1 54 VAL 54 611 611 VAL VAL B . n B 1 55 MET 55 612 612 MET MET B . n B 1 56 GLY 56 613 613 GLY GLY B . n B 1 57 ALA 57 614 614 ALA ALA B . n B 1 58 ARG 58 615 615 ARG ARG B . n B 1 59 ASN 59 616 616 ASN ASN B . n B 1 60 PHE 60 617 617 PHE PHE B . n B 1 61 VAL 61 618 618 VAL VAL B . n B 1 62 LEU 62 619 619 LEU LEU B . n B 1 63 VAL 63 620 620 VAL VAL B . n B 1 64 LEU 64 621 621 LEU LEU B . n B 1 65 SER 65 622 622 SER SER B . n B 1 66 PRO 66 623 623 PRO PRO B . n B 1 67 GLY 67 624 624 GLY GLY B . n B 1 68 ALA 68 625 625 ALA ALA B . n B 1 69 LEU 69 626 626 LEU LEU B . n B 1 70 ASP 70 627 627 ASP ASP B . n B 1 71 LYS 71 628 628 LYS LYS B . n B 1 72 CYS 72 629 629 CYS CYS B . n B 1 73 MET 73 630 630 MET MET B . n B 1 74 GLN 74 631 631 GLN GLN B . n B 1 75 ASP 75 632 632 ASP ASP B . n B 1 76 HIS 76 633 633 HIS HIS B . n B 1 77 ASP 77 634 634 ASP ASP B . n B 1 78 CYS 78 635 635 CYS CYS B . n B 1 79 LYS 79 636 636 LYS LYS B . n B 1 80 ASP 80 637 637 ASP ASP B . n B 1 81 TRP 81 638 638 TRP TRP B . n B 1 82 VAL 82 639 639 VAL VAL B . n B 1 83 HIS 83 640 640 HIS HIS B . n B 1 84 LYS 84 641 641 LYS LYS B . n B 1 85 GLU 85 642 642 GLU GLU B . n B 1 86 ILE 86 643 643 ILE ILE B . n B 1 87 VAL 87 644 644 VAL VAL B . n B 1 88 THR 88 645 645 THR THR B . n B 1 89 ALA 89 646 646 ALA ALA B . n B 1 90 LEU 90 647 647 LEU LEU B . n B 1 91 SER 91 648 648 SER SER B . n B 1 92 CYS 92 649 649 CYS CYS B . n B 1 93 GLY 93 650 650 GLY GLY B . n B 1 94 LYS 94 651 651 LYS LYS B . n B 1 95 ASN 95 652 652 ASN ASN B . n B 1 96 ILE 96 653 653 ILE ILE B . n B 1 97 VAL 97 654 654 VAL VAL B . n B 1 98 PRO 98 655 655 PRO PRO B . n B 1 99 ILE 99 656 656 ILE ILE B . n B 1 100 ILE 100 657 657 ILE ILE B . n B 1 101 ASP 101 658 658 ASP ASP B . n B 1 102 GLY 102 659 659 GLY GLY B . n B 1 103 PHE 103 660 660 PHE PHE B . n B 1 104 GLU 104 661 661 GLU GLU B . n B 1 105 TRP 105 662 662 TRP TRP B . n B 1 106 PRO 106 663 663 PRO PRO B . n B 1 107 GLU 107 664 664 GLU GLU B . n B 1 108 PRO 108 665 665 PRO PRO B . n B 1 109 GLN 109 666 666 GLN GLN B . n B 1 110 VAL 110 667 667 VAL VAL B . n B 1 111 LEU 111 668 668 LEU LEU B . n B 1 112 PRO 112 669 669 PRO PRO B . n B 1 113 GLU 113 670 670 GLU GLU B . n B 1 114 ASP 114 671 671 ASP ASP B . n B 1 115 MET 115 672 672 MET MET B . n B 1 116 GLN 116 673 673 GLN GLN B . n B 1 117 ALA 117 674 674 ALA ALA B . n B 1 118 VAL 118 675 675 VAL VAL B . n B 1 119 LEU 119 676 676 LEU LEU B . n B 1 120 THR 120 677 677 THR THR B . n B 1 121 PHE 121 678 678 PHE PHE B . n B 1 122 ASN 122 679 679 ASN ASN B . n B 1 123 GLY 123 680 680 GLY GLY B . n B 1 124 ILE 124 681 681 ILE ILE B . n B 1 125 LYS 125 682 682 LYS LYS B . n B 1 126 TRP 126 683 683 TRP TRP B . n B 1 127 SER 127 684 684 SER SER B . n B 1 128 HIS 128 685 685 HIS HIS B . n B 1 129 GLU 129 686 686 GLU GLU B . n B 1 130 TYR 130 687 687 TYR TYR B . n B 1 131 GLN 131 688 688 GLN GLN B . n B 1 132 GLU 132 689 689 GLU GLU B . n B 1 133 ALA 133 690 690 ALA ALA B . n B 1 134 THR 134 691 691 THR THR B . n B 1 135 ILE 135 692 692 ILE ILE B . n B 1 136 GLU 136 693 693 GLU GLU B . n B 1 137 LYS 137 694 694 LYS LYS B . n B 1 138 ILE 138 695 695 ILE ILE B . n B 1 139 ILE 139 696 696 ILE ILE B . n B 1 140 ARG 140 697 697 ARG ARG B . n B 1 141 PHE 141 698 698 PHE PHE B . n B 1 142 LEU 142 699 699 LEU LEU B . n B 1 143 GLN 143 700 700 GLN GLN B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email ssambashivan@nurabio.com _pdbx_contact_author.name_first Shilpa _pdbx_contact_author.name_last Sambashivan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3138-9747 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Q0U 1 801 1 Q0U 16A A . D 2 Q0U 1 801 2 Q0U 16A B . E 3 HOH 1 901 25 HOH HOH A . E 3 HOH 2 902 113 HOH HOH A . E 3 HOH 3 903 111 HOH HOH A . E 3 HOH 4 904 98 HOH HOH A . E 3 HOH 5 905 52 HOH HOH A . E 3 HOH 6 906 142 HOH HOH A . E 3 HOH 7 907 93 HOH HOH A . E 3 HOH 8 908 30 HOH HOH A . E 3 HOH 9 909 182 HOH HOH A . E 3 HOH 10 910 14 HOH HOH A . E 3 HOH 11 911 186 HOH HOH A . E 3 HOH 12 912 32 HOH HOH A . E 3 HOH 13 913 27 HOH HOH A . E 3 HOH 14 914 33 HOH HOH A . E 3 HOH 15 915 122 HOH HOH A . E 3 HOH 16 916 106 HOH HOH A . E 3 HOH 17 917 12 HOH HOH A . E 3 HOH 18 918 55 HOH HOH A . E 3 HOH 19 919 90 HOH HOH A . E 3 HOH 20 920 65 HOH HOH A . E 3 HOH 21 921 94 HOH HOH A . E 3 HOH 22 922 82 HOH HOH A . E 3 HOH 23 923 48 HOH HOH A . E 3 HOH 24 924 116 HOH HOH A . E 3 HOH 25 925 68 HOH HOH A . E 3 HOH 26 926 41 HOH HOH A . E 3 HOH 27 927 13 HOH HOH A . E 3 HOH 28 928 166 HOH HOH A . E 3 HOH 29 929 28 HOH HOH A . E 3 HOH 30 930 91 HOH HOH A . E 3 HOH 31 931 67 HOH HOH A . E 3 HOH 32 932 156 HOH HOH A . E 3 HOH 33 933 126 HOH HOH A . E 3 HOH 34 934 47 HOH HOH A . E 3 HOH 35 935 193 HOH HOH A . E 3 HOH 36 936 6 HOH HOH A . E 3 HOH 37 937 19 HOH HOH A . E 3 HOH 38 938 75 HOH HOH A . E 3 HOH 39 939 180 HOH HOH A . E 3 HOH 40 940 112 HOH HOH A . E 3 HOH 41 941 172 HOH HOH A . E 3 HOH 42 942 50 HOH HOH A . E 3 HOH 43 943 26 HOH HOH A . E 3 HOH 44 944 15 HOH HOH A . E 3 HOH 45 945 11 HOH HOH A . E 3 HOH 46 946 89 HOH HOH A . E 3 HOH 47 947 69 HOH HOH A . E 3 HOH 48 948 76 HOH HOH A . E 3 HOH 49 949 36 HOH HOH A . E 3 HOH 50 950 165 HOH HOH A . E 3 HOH 51 951 18 HOH HOH A . E 3 HOH 52 952 10 HOH HOH A . E 3 HOH 53 953 103 HOH HOH A . E 3 HOH 54 954 131 HOH HOH A . E 3 HOH 55 955 143 HOH HOH A . E 3 HOH 56 956 17 HOH HOH A . E 3 HOH 57 957 54 HOH HOH A . E 3 HOH 58 958 107 HOH HOH A . E 3 HOH 59 959 24 HOH HOH A . E 3 HOH 60 960 164 HOH HOH A . E 3 HOH 61 961 181 HOH HOH A . E 3 HOH 62 962 84 HOH HOH A . E 3 HOH 63 963 141 HOH HOH A . E 3 HOH 64 964 70 HOH HOH A . E 3 HOH 65 965 168 HOH HOH A . E 3 HOH 66 966 134 HOH HOH A . E 3 HOH 67 967 145 HOH HOH A . E 3 HOH 68 968 29 HOH HOH A . E 3 HOH 69 969 119 HOH HOH A . E 3 HOH 70 970 140 HOH HOH A . E 3 HOH 71 971 175 HOH HOH A . E 3 HOH 72 972 158 HOH HOH A . E 3 HOH 73 973 189 HOH HOH A . E 3 HOH 74 974 154 HOH HOH A . E 3 HOH 75 975 192 HOH HOH A . E 3 HOH 76 976 150 HOH HOH A . E 3 HOH 77 977 144 HOH HOH A . E 3 HOH 78 978 127 HOH HOH A . E 3 HOH 79 979 148 HOH HOH A . E 3 HOH 80 980 102 HOH HOH A . E 3 HOH 81 981 167 HOH HOH A . E 3 HOH 82 982 162 HOH HOH A . E 3 HOH 83 983 169 HOH HOH A . E 3 HOH 84 984 87 HOH HOH A . E 3 HOH 85 985 101 HOH HOH A . E 3 HOH 86 986 125 HOH HOH A . E 3 HOH 87 987 104 HOH HOH A . E 3 HOH 88 988 188 HOH HOH A . E 3 HOH 89 989 151 HOH HOH A . F 3 HOH 1 901 161 HOH HOH B . F 3 HOH 2 902 38 HOH HOH B . F 3 HOH 3 903 191 HOH HOH B . F 3 HOH 4 904 83 HOH HOH B . F 3 HOH 5 905 95 HOH HOH B . F 3 HOH 6 906 74 HOH HOH B . F 3 HOH 7 907 92 HOH HOH B . F 3 HOH 8 908 96 HOH HOH B . F 3 HOH 9 909 44 HOH HOH B . F 3 HOH 10 910 43 HOH HOH B . F 3 HOH 11 911 109 HOH HOH B . F 3 HOH 12 912 23 HOH HOH B . F 3 HOH 13 913 120 HOH HOH B . F 3 HOH 14 914 4 HOH HOH B . F 3 HOH 15 915 77 HOH HOH B . F 3 HOH 16 916 46 HOH HOH B . F 3 HOH 17 917 170 HOH HOH B . F 3 HOH 18 918 2 HOH HOH B . F 3 HOH 19 919 56 HOH HOH B . F 3 HOH 20 920 51 HOH HOH B . F 3 HOH 21 921 72 HOH HOH B . F 3 HOH 22 922 21 HOH HOH B . F 3 HOH 23 923 60 HOH HOH B . F 3 HOH 24 924 157 HOH HOH B . F 3 HOH 25 925 159 HOH HOH B . F 3 HOH 26 926 49 HOH HOH B . F 3 HOH 27 927 135 HOH HOH B . F 3 HOH 28 928 81 HOH HOH B . F 3 HOH 29 929 7 HOH HOH B . F 3 HOH 30 930 34 HOH HOH B . F 3 HOH 31 931 110 HOH HOH B . F 3 HOH 32 932 3 HOH HOH B . F 3 HOH 33 933 40 HOH HOH B . F 3 HOH 34 934 63 HOH HOH B . F 3 HOH 35 935 20 HOH HOH B . F 3 HOH 36 936 86 HOH HOH B . F 3 HOH 37 937 42 HOH HOH B . F 3 HOH 38 938 1 HOH HOH B . F 3 HOH 39 939 99 HOH HOH B . F 3 HOH 40 940 129 HOH HOH B . F 3 HOH 41 941 88 HOH HOH B . F 3 HOH 42 942 8 HOH HOH B . F 3 HOH 43 943 133 HOH HOH B . F 3 HOH 44 944 39 HOH HOH B . F 3 HOH 45 945 179 HOH HOH B . F 3 HOH 46 946 16 HOH HOH B . F 3 HOH 47 947 118 HOH HOH B . F 3 HOH 48 948 58 HOH HOH B . F 3 HOH 49 949 152 HOH HOH B . F 3 HOH 50 950 183 HOH HOH B . F 3 HOH 51 951 22 HOH HOH B . F 3 HOH 52 952 160 HOH HOH B . F 3 HOH 53 953 176 HOH HOH B . F 3 HOH 54 954 5 HOH HOH B . F 3 HOH 55 955 80 HOH HOH B . F 3 HOH 56 956 173 HOH HOH B . F 3 HOH 57 957 139 HOH HOH B . F 3 HOH 58 958 171 HOH HOH B . F 3 HOH 59 959 137 HOH HOH B . F 3 HOH 60 960 31 HOH HOH B . F 3 HOH 61 961 64 HOH HOH B . F 3 HOH 62 962 130 HOH HOH B . F 3 HOH 63 963 9 HOH HOH B . F 3 HOH 64 964 132 HOH HOH B . F 3 HOH 65 965 66 HOH HOH B . F 3 HOH 66 966 45 HOH HOH B . F 3 HOH 67 967 73 HOH HOH B . F 3 HOH 68 968 35 HOH HOH B . F 3 HOH 69 969 78 HOH HOH B . F 3 HOH 70 970 114 HOH HOH B . F 3 HOH 71 971 136 HOH HOH B . F 3 HOH 72 972 163 HOH HOH B . F 3 HOH 73 973 187 HOH HOH B . F 3 HOH 74 974 100 HOH HOH B . F 3 HOH 75 975 117 HOH HOH B . F 3 HOH 76 976 146 HOH HOH B . F 3 HOH 77 977 124 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1460 ? 1 MORE -8 ? 1 'SSA (A^2)' 13390 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 973 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-21 2 'Structure model' 1 1 2022-11-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y+1/2,-z+1/2 4 -x,-y+1/2,z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 8D0F _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 599 ? ? -113.51 -142.73 2 1 SER B 572 ? ? -145.82 -14.54 3 1 GLU B 599 ? ? -110.47 -137.40 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 561 ? OG1 ? A THR 4 OG1 2 1 Y 1 A THR 561 ? CG2 ? A THR 4 CG2 3 1 Y 1 B THR 561 ? OG1 ? B THR 4 OG1 4 1 Y 1 B THR 561 ? CG2 ? B THR 4 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 558 ? A SER 1 2 1 Y 1 A GLY 559 ? A GLY 2 3 1 Y 1 A ASP 560 ? A ASP 3 4 1 Y 1 B SER 558 ? B SER 1 5 1 Y 1 B GLY 559 ? B GLY 2 6 1 Y 1 B ASP 560 ? B ASP 3 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]methyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; Q0U 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 2 21 21' _space_group.name_Hall 'P 2 2ab (z,x,y)' _space_group.IT_number 18 _space_group.crystal_system orthorhombic _space_group.id 1 #